Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_11817 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 6.3e-146 520.8 268 100.0
SEGI_22880 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 1.3e-127 459.9 326 78.5
TAR374G0385 Trochodendron aralioides HOM05D003495 ORTHO05D004159 2.1e-77 293.1 317 57.7
Mapoly0124s0011 Marchantia polymorpha HOM05D003495 ORTHO05D004159 2.6e-75 286.2 340 53.8
Oeu062191.1 Olea europaea HOM05D003495 ORTHO05D004159 2.6e-75 286.2 315 55.9
AagrBONN_evm.TU.Sc2ySwM_228.311 Anthoceros agrestis HOM05D003495 ORTHO05D004159 3.4e-75 285.8 326 54.3
Oeu032840.1 Olea europaea HOM05D003495 ORTHO05D004159 1.3e-74 283.9 315 54.3
TAR622G0597 Trochodendron aralioides HOM05D003495 ORTHO05D004159 1.3e-74 283.9 316 55.7
Actinidia18095 Actinidia chinensis HOM05D003495 ORTHO05D004159 2.9e-74 282.7 315 54.9
GSVIVG01036514001 Vitis vinifera HOM05D003495 ORTHO05D004159 2.9e-74 282.7 312 55.4
CAN.G497.44 Capsicum annuum HOM05D003495 ORTHO05D004159 1.1e-73 280.8 313 54.6
Hma1.2p1_0588F.1_g184640 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 1.4e-73 280.4 315 55.2
CANSAT64G2734 Cannabis sativa HOM05D003495 ORTHO05D004159 1.9e-73 280.0 308 56.5
CSS0005441 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 3.2e-73 279.3 303 55.8
Gohir.A03G138900 Gossypium hirsutum HOM05D003495 ORTHO05D004159 4.2e-73 278.9 315 54.9
Nitab4.5_0002171g0110 Nicotiana tabacum HOM05D003495 ORTHO05D004159 4.2e-73 278.9 316 53.8
COL.COLO4_24186 Corchorus olitorius HOM05D003495 ORTHO05D004159 5.5e-73 278.5 315 54.6
Dinv34893 Davidia involucrata HOM05D003495 ORTHO05D004159 5.5e-73 278.5 314 54.8
vmacro05603 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 5.5e-73 278.5 317 54.3
CiPaw.03G081100 Carya illinoinensis HOM05D003495 ORTHO05D004159 7.1e-73 278.1 315 54.9
Gohir.D02G161820 Gossypium hirsutum HOM05D003495 ORTHO05D004159 9.3e-73 277.7 315 54.6
Gorai.005G181800 Gossypium raimondii HOM05D003495 ORTHO05D004159 9.3e-73 277.7 315 54.6
Nitab4.5_0002978g0060 Nicotiana tabacum HOM05D003495 ORTHO05D004159 9.3e-73 277.7 316 53.8
Peaxi162Scf00020g02133 Petunia axillaris HOM05D003495 ORTHO05D004159 9.3e-73 277.7 316 53.8
Sopen02g034150 Solanum pennellii HOM05D003495 ORTHO05D004159 1.2e-72 277.3 314 54.8
Thecc.02G251800 Theobroma cacao HOM05D003495 ORTHO05D004159 1.2e-72 277.3 317 55.2
CSS0018508 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 2.1e-72 276.6 314 54.1
DCAR_011000 Daucus carota HOM05D003495 ORTHO05D004159 2.7e-72 276.2 315 54.3
QL02p063585 Quercus lobata HOM05D003495 ORTHO05D004159 3.5e-72 275.8 314 55.7
TWI60G0296 Tripterygium wilfordii HOM05D003495 ORTHO05D004159 4.6e-72 275.4 316 53.2
Cc07_g04650 Coffea canephora HOM05D003495 ORTHO05D004159 7.9e-72 274.6 317 54.6
Lj2g0019402 Lotus japonicus HOM05D003495 ORTHO05D004159 7.9e-72 274.6 314 52.9
Aqoxy5G03432 Aquilegia oxysepala HOM05D003495 ORTHO05D004159 1.0e-71 274.2 310 54.2
Manes.01G104801 Manihot esculenta HOM05D003495 ORTHO05D004159 1.3e-71 273.9 310 54.5
Medtr6g016215 Medicago truncatula HOM05D003495 ORTHO05D004159 1.3e-71 273.9 317 53.0
ClCG11G005050 Citrullus lanatus HOM05D003495 ORTHO05D004159 1.8e-71 273.5 312 53.8
HanXRQChr15g0464911 Helianthus annuus HOM05D003495 ORTHO05D004159 1.8e-71 273.5 316 54.1
Peaxi162Scf00479g01011 Petunia axillaris HOM05D003495 ORTHO05D004159 2.3e-71 273.1 317 53.9
arahy.Tifrunner.gnm1.ann1.AQF1TQ Arachis hypogaea HOM05D003495 ORTHO05D004159 3.0e-71 272.7 320 53.1
Cfa007716 Carpinus fangiana HOM05D003495 ORTHO05D004159 3.0e-71 272.7 313 54.6
Lalb_Chr02g0158651 Lupinus albus HOM05D003495 ORTHO05D004159 3.9e-71 272.3 317 52.4
CSS0004216 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 5.1e-71 271.9 317 53.6
Ciclev10010888m.g Citrus clementina HOM05D003495 ORTHO05D004159 5.1e-71 271.9 317 52.7
Nitab4.5_0001397g0040 Nicotiana tabacum HOM05D003495 ORTHO05D004159 5.1e-71 271.9 317 53.3
Cpa.g.sc14.256 Carica papaya HOM05D003495 ORTHO05D004159 6.7e-71 271.6 311 54.3
Nitab4.5_0000154g0090 Nicotiana tabacum HOM05D003495 ORTHO05D004159 6.7e-71 271.6 317 53.3
ECA232G2419 Erigeron canadensis HOM05D003495 ORTHO05D004159 8.7e-71 271.2 312 54.8
Glyma.19G037200 Glycine max HOM05D003495 ORTHO05D004159 8.7e-71 271.2 316 52.2
Sopen03g010670 Solanum pennellii HOM05D003495 ORTHO05D004159 8.7e-71 271.2 318 53.8
Haze_14358 Corylus avellana HOM05D003495 ORTHO05D004159 1.5e-70 270.4 313 54.6
Duzib248G1077 Durio zibethinus HOM05D003495 ORTHO05D004159 1.5e-70 270.4 315 53.3
Lj4C126G12 Lonicera japonica HOM05D003495 ORTHO05D004159 1.5e-70 270.4 318 54.1
ATR0618G126 Amborella trichopoda HOM05D003495 ORTHO05D004159 2.5e-70 269.6 305 55.7
Glyma.11G061700 Glycine max HOM05D003495 ORTHO05D004159 2.5e-70 269.6 316 52.2
Os02g0830900 Oryza sativa ssp. japonica HOM05D003495 ORTHO05D004159 2.5e-70 269.6 320 53.1
PGR004G1253 Punica granatum HOM05D003495 ORTHO05D004159 5.6e-70 268.5 308 53.9
Phvul.004G045000 Phaseolus vulgaris HOM05D003495 ORTHO05D004159 7.4e-70 268.1 317 51.7
Psat1g064160 Pisum sativum HOM05D003495 ORTHO05D004159 7.4e-70 268.1 317 53.0
MD09G1077600 Malus domestica HOM05D003495 ORTHO05D004159 9.6e-70 267.7 312 53.8
Solyc03g046450.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 9.6e-70 267.7 318 53.5
Atru.chr8.588 Acer truncatum HOM05D003495 ORTHO05D004159 1.3e-69 267.3 317 52.7
VMungo0464G1145 Vigna mungo HOM05D003495 ORTHO05D004159 1.3e-69 267.3 316 52.2
CAN.G563.4 Capsicum annuum HOM05D003495 ORTHO05D004159 1.6e-69 266.9 317 52.7
CsaV3_5G038800 Cucumis sativus L. HOM05D003495 ORTHO05D004159 1.6e-69 266.9 311 53.4
Potri.017G106100 Populus trichocarpa HOM05D003495 ORTHO05D004159 2.1e-69 266.5 315 53.7
Prupe.3G246500 Prunus persica HOM05D003495 ORTHO05D004159 2.1e-69 266.5 310 53.9
MELO3C022060.2 Cucumis melo HOM05D003495 ORTHO05D004159 2.8e-69 266.2 311 53.1
HanXRQChr15g0489851 Helianthus annuus HOM05D003495 ORTHO05D004159 6.2e-69 265.0 314 52.9
RcHm_v2.0_Chr2g0164371 Rosa chinensis HOM05D003495 ORTHO05D004159 6.2e-69 265.0 311 53.4
Migut.K00878 Erythranthe guttata HOM05D003495 ORTHO05D004159 1.4e-68 263.8 315 54.3
SMO351G0561 Selaginella moellendorffii HOM05D003495 ORTHO05D004159 1.4e-68 263.8 320 51.6
Duzib268G1709 Durio zibethinus HOM05D003495 ORTHO05D004159 3.1e-68 262.7 315 52.4
Hund25028 Selenicereus undatus HOM05D003495 ORTHO05D004159 3.1e-68 262.7 312 52.2
HPP92_025565 Vanilla planifolia HOM05D003495 ORTHO05D004159 3.1e-68 262.7 309 52.4
Zm00001eb190620 Zea mays HOM05D003495 ORTHO05D004159 3.1e-68 262.7 318 50.9
Sc04g0005950 Simmondsia chinensis HOM05D003495 ORTHO05D004159 4.0e-68 262.3 313 52.4
Ah.02g128180 Amaranthus hybridus HOM05D003495 ORTHO05D004159 5.3e-68 261.9 309 53.1
FAN09G4792 Fragaria x ananassa HOM05D003495 ORTHO05D004159 5.3e-68 261.9 308 53.6
EL10Ac6g14290 Beta vulgaris HOM05D003495 ORTHO05D004159 9.0e-68 261.2 311 52.4
MSTRG.3380 Avicennia marina HOM05D003495 ORTHO05D004159 1.2e-67 260.8 315 51.7
FvH4_6g46050 Fragaria vesca HOM05D003495 ORTHO05D004159 1.2e-67 260.8 308 53.6
FAN14G1484 Fragaria x ananassa HOM05D003495 ORTHO05D004159 1.2e-67 260.8 308 53.6
FAN14G3604 Fragaria x ananassa HOM05D003495 ORTHO05D004159 1.2e-67 260.8 308 53.6
Sed0015478 Sechium edule HOM05D003495 ORTHO05D004159 1.2e-67 260.8 310 52.9
unitig_748.g7269 Utricularia gibba HOM05D003495 ORTHO05D004159 1.2e-67 260.8 314 51.6
Lsat_1_v5_gn_4_173921 Lactuca sativa HOM05D003495 ORTHO05D004159 1.5e-67 260.4 305 54.4
Eucgr.I02084 Eucalyptus grandis HOM05D003495 ORTHO05D004159 2.0e-67 260.0 311 53.4
FAN02G1990 Fragaria x ananassa HOM05D003495 ORTHO05D004159 2.6e-67 259.6 308 53.2
AUR62002798 Chenopodium quinoa HOM05D003495 ORTHO05D004159 3.4e-67 259.2 315 52.4
AUR62014105 Chenopodium quinoa HOM05D003495 ORTHO05D004159 5.8e-67 258.5 315 52.1
RcHm_v2.0_Chr2g0117951 Rosa chinensis HOM05D003495 ORTHO05D004159 1.3e-66 257.3 306 52.9
Sed0005421 Sechium edule HOM05D003495 ORTHO05D004159 1.3e-66 257.3 309 52.4
MD17G1067900 Malus domestica HOM05D003495 ORTHO05D004159 2.2e-66 256.5 312 51.9
PSO063G5616 Papaver somniferum HOM05D003495 ORTHO05D004159 2.9e-66 256.1 313 51.4
Sp6g28440 Schrenkiella parvula HOM05D003495 ORTHO05D004159 2.9e-66 256.1 322 52.2
Aa31LG11G13890 Aethionema arabicum HOM05D003495 ORTHO05D004159 4.9e-66 255.4 320 51.2
FAN05G3267 Fragaria x ananassa HOM05D003495 ORTHO05D004159 4.9e-66 255.4 308 52.6
PSO063G7059 Papaver somniferum HOM05D003495 ORTHO05D004159 8.4e-66 254.6 337 49.9
CARHR197650 Cardamine hirsuta HOM05D003495 ORTHO05D004159 1.4e-65 253.8 322 50.9
AT5G15680 Arabidopsis thaliana HOM05D003495 ORTHO05D004159 1.9e-65 253.4 322 50.9
Thhalv10012410m.g Eutrema salsugineum HOM05D003495 ORTHO05D004159 3.2e-65 252.7 319 51.1
BcaNung02199 Brassica carinata HOM05D003495 ORTHO05D004159 4.2e-65 252.3 319 51.1
Gohir.D01G134500 Gossypium hirsutum HOM05D003495 ORTHO05D004159 7.1e-65 251.5 312 50.3
Gorai.002G166500 Gossypium raimondii HOM05D003495 ORTHO05D004159 7.1e-65 251.5 312 50.3
BcaC03g18444 Brassica carinata HOM05D003495 ORTHO05D004159 9.3e-65 251.1 319 51.1
C02p07920 Brassica napus HOM05D003495 ORTHO05D004159 1.2e-64 250.8 319 51.1
BolC2t06715H Brassica oleracea HOM05D003495 ORTHO05D004159 1.2e-64 250.8 319 51.1
A02p03170 Brassica napus HOM05D003495 ORTHO05D004159 1.6e-64 250.4 319 51.1
BraA02t05287Z Brassica rapa HOM05D003495 ORTHO05D004159 1.6e-64 250.4 319 51.1
Gohir.A01G142600 Gossypium hirsutum HOM05D003495 ORTHO05D004159 1.6e-64 250.4 312 50.3
AL6G26520 Arabidopsis lyrata HOM05D003495 ORTHO05D004159 2.1e-64 250.0 322 50.3
Carub.0006s1383 Capsella rubella HOM05D003495 ORTHO05D004159 2.1e-64 250.0 320 50.3
A03p07290 Brassica napus HOM05D003495 ORTHO05D004159 3.5e-64 249.2 313 50.5
BraA03t10052Z Brassica rapa HOM05D003495 ORTHO05D004159 4.6e-64 248.8 311 49.8
THA.LOC104802983 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 1.0e-63 247.7 323 50.8
C03p08360 Brassica napus HOM05D003495 ORTHO05D004159 1.3e-63 247.3 312 49.7
BolC3t13343H Brassica oleracea HOM05D003495 ORTHO05D004159 1.3e-63 247.3 312 49.7
THA.LOC104820987 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 1.3e-63 247.3 314 51.0
Pp3c12_3160 Physcomitrium patens HOM05D003495 ORTHO05D004159 6.7e-63 245.0 324 49.1
Pp3c3_1860 Physcomitrium patens HOM05D003495 ORTHO05D004159 8.7e-63 244.6 345 47.0
Pp3c13_5370 Physcomitrium patens HOM05D003495 ORTHO05D004159 1.1e-62 244.2 341 46.9
CDE04G3053 Ceratophyllum demersum HOM05D003495 ORTHO05D004159 5.7e-62 241.9 322 48.1
BcaB01g05032 Brassica carinata HOM05D003495 ORTHO05D004159 9.7e-62 241.1 308 49.4
Dinv33880 Davidia involucrata HOM05D003495 ORTHO05D004159 5.3e-60 235.3 269 54.6
TPR.G15949 Trifolium pratense HOM05D003495 ORTHO05D004159 2.6e-59 233.0 260 54.2
Hund20735 Selenicereus undatus HOM05D003495 ORTHO05D004159 7.7e-59 231.5 313 47.6
SHI33626 Sapria himalayana HOM05D003495 ORTHO05D004159 1.6e-56 223.8 310 47.1
ECA238G4655 Erigeron canadensis HOM05D003495 ORTHO05D004159 1.4e-49 200.7 311 43.7
Ca_20757_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 7.9e-48 194.9 199 59.8
HanXRQChr14g0447961 Helianthus annuus HOM05D003495 ORTHO05D004159 1.4e-47 194.1 318 40.9
Lsat_1_v5_gn_2_85980 Lactuca sativa HOM05D003495 ORTHO05D004159 2.9e-42 176.4 306 42.2
CBR_g31516 Chara braunii HOM05D003495 ORTHO05D004159 2.6e-35 153.3 331 34.7
Solyc02g089390.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 2.6e-35 153.3 152 60.5
Psat6g133600 Pisum sativum HOM05D003495 ORTHO05D004159 2.0e-27 127.1 141 61.7
CAN.G497.68 Capsicum annuum HOM05D003495 ORTHO05D015025 1.3e-21 107.8 144 50.7
CAN.G497.66 Capsicum annuum HOM05D003495 ORTHO05D004159 9.1e-20 101.7 190 42.1
CAN.G497.63 Capsicum annuum HOM05D003495 ORTHO05D004159 4.5e-19 99.4 247 34.8


User provided reference genes

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