Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.3e-176 622.1 303 100.0
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 1.0e-67 261.2 204 59.8
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 2.3e-67 260.0 204 59.8
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 5.1e-67 258.8 204 58.8
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 2.5e-66 256.5 204 59.3
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 3.3e-66 256.1 215 57.7
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 3.3e-66 256.1 205 59.0
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 9.5e-66 254.6 204 58.3
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 9.5e-66 254.6 215 54.0
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 1.2e-65 254.2 205 58.0
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 2.8e-65 253.1 204 56.9
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 3.6e-65 252.7 213 57.7
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 3.6e-65 252.7 204 57.8
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 6.2e-65 251.9 205 59.0
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 8.1e-65 251.5 204 58.8
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 1.1e-64 251.1 204 56.9
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 1.1e-64 251.1 204 58.8
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 1.1e-64 251.1 204 57.8
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 1.4e-64 250.8 205 57.6
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 2.4e-64 250.0 205 57.6
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 4.0e-64 249.2 204 57.4
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 5.2e-64 248.8 204 58.3
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 5.2e-64 248.8 200 58.5
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 5.2e-64 248.8 212 55.2
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 6.8e-64 248.4 204 57.4
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 6.8e-64 248.4 209 55.5
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 1.2e-63 247.7 210 55.7
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 1.2e-63 247.7 204 56.9
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.2e-63 247.7 204 57.4
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.2e-63 247.7 204 57.4
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 1.2e-63 247.7 205 57.1
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 2.6e-63 246.5 204 55.4
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 2.6e-63 246.5 206 56.3
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 3.4e-63 246.1 212 56.1
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 3.4e-63 246.1 204 56.9
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 4.4e-63 245.7 206 56.3
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 4.4e-63 245.7 204 54.9
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 5.8e-63 245.4 204 56.9
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 5.8e-63 245.4 204 56.9
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 9.9e-63 244.6 204 56.4
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 9.9e-63 244.6 204 54.9
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 1.3e-62 244.2 204 55.9
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.3e-62 244.2 205 55.6
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 2.2e-62 243.4 205 54.1
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 2.9e-62 243.0 204 56.9
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 2.9e-62 243.0 204 53.9
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 2.9e-62 243.0 209 56.5
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 3.8e-62 242.7 204 56.4
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 4.9e-62 242.3 204 55.4
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 4.9e-62 242.3 205 55.1
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 4.9e-62 242.3 204 55.4
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 4.9e-62 242.3 209 55.5
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 6.4e-62 241.9 205 54.6
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 8.4e-62 241.5 205 55.1
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 1.9e-61 240.4 204 56.9
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 2.4e-61 240.0 205 57.6
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 2.4e-61 240.0 205 54.1
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 4.1e-61 239.2 209 55.0
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 1.2e-60 237.7 209 55.5
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.2e-60 237.7 203 54.2
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.1e-60 236.9 209 53.1
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.1e-60 236.9 206 54.9
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.1e-60 236.9 203 54.7
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.7e-60 236.5 212 52.8
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 2.7e-60 236.5 212 52.8
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 3.5e-60 236.1 206 54.4
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 3.5e-60 236.1 205 54.6
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 7.8e-60 235.0 208 52.4
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 1.0e-59 234.6 204 55.9
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 1.3e-59 234.2 221 52.0
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.3e-59 234.2 212 51.9
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.7e-59 233.8 209 51.7
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 5.1e-59 232.3 199 54.8
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 5.1e-59 232.3 209 53.6
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 6.6e-59 231.9 203 52.7
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 8.7e-59 231.5 204 54.4
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 1.1e-58 231.1 203 52.7
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 1.1e-58 231.1 203 52.7
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.1e-58 231.1 209 54.1
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.1e-58 231.1 204 52.5
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 1.5e-58 230.7 203 52.2
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.5e-58 230.7 205 55.6
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 2.5e-58 229.9 205 55.6
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 2.5e-58 229.9 204 52.5
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 3.3e-58 229.6 203 52.2
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 3.3e-58 229.6 203 52.2
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 4.3e-58 229.2 184 57.1
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 7.3e-58 228.4 209 52.2
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 2.1e-57 226.9 204 52.0
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 2.1e-57 226.9 231 49.4
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 2.8e-57 226.5 203 54.7
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 3.6e-57 226.1 204 50.5
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 3.6e-57 226.1 208 51.0
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 6.2e-57 225.3 201 53.7
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 8.1e-57 224.9 206 51.9
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 1.1e-56 224.6 205 52.2
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 1.1e-56 224.6 205 52.2
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 1.4e-56 224.2 205 52.2
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 1.4e-56 224.2 205 52.2
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 1.4e-56 224.2 205 52.2
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 1.8e-56 223.8 203 51.7
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 3.1e-56 223.0 205 53.2
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.0e-56 222.6 234 49.1
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.0e-56 222.6 234 49.1
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 5.2e-56 222.2 190 58.9
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 5.2e-56 222.2 139 74.1
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 9.0e-56 221.5 199 53.3
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 9.0e-56 221.5 212 50.0
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 9.0e-56 221.5 234 49.1
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.5e-55 220.7 204 51.5
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.5e-55 220.7 235 48.1
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 2.0e-55 220.3 212 50.0
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 9.9e-55 218.0 204 53.4
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.3e-54 217.6 209 50.7
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.7e-54 217.2 204 51.0
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 2.9e-54 216.5 204 50.5
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 1.4e-53 214.2 204 51.0
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 5.4e-53 212.2 204 49.5
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 1.2e-52 211.1 185 54.6
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.1e-52 210.3 177 57.1
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 4.6e-52 209.1 180 55.6
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 7.8e-52 208.4 208 48.1
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 7.8e-52 208.4 206 47.6
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 1.3e-51 207.6 182 56.0
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 2.3e-51 206.8 263 42.6
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.4e-48 197.6 217 46.1
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.4e-48 197.6 217 46.1
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.4e-48 196.8 183 49.2
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 4.0e-48 196.1 206 48.5
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.9e-45 187.2 211 45.0
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 1.9e-45 187.2 153 54.9
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 4.6e-44 182.6 186 45.7
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 1.0e-43 181.4 181 50.3
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 1.5e-42 177.6 144 57.6
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 1.6e-41 174.1 158 50.0
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 2.1e-41 173.7 218 40.4
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 1.1e-40 171.4 214 41.6
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.4e-40 170.2 209 42.6
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 5.3e-40 169.1 139 54.0
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 2.1e-36 157.1 163 47.2
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 2.7e-36 156.8 168 47.6
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 3.5e-36 156.4 216 40.3
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.6e-36 156.0 209 40.7
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 1.5e-34 151.0 148 50.0
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 1.3e-33 147.9 204 40.7
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 4.5e-31 139.4 120 53.3
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.3e-30 137.9 204 39.7
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 1.8e-27 127.5 111 54.1
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.7e-25 119.8 123 48.8
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 1.1e-24 118.2 111 50.5
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 3.4e-23 113.2 79 64.6
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 1.3e-22 111.3 80 62.5
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 9.4e-13 78.6 66 53.0
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.6e-12 77.8 65 61.5
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.3e-11 73.9 141 34.0
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.3e-11 73.9 141 34.0
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 3.9e-11 73.2 69 47.8
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.8e-09 67.0 71 47.9
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 6.3e-09 65.9 74 39.2
Ca_13916_v3 Cicer arietinum L. HOM05D001742 ORTHO05D001689 2.9e-06 57.0 224 25.4
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 5.0e-06 56.2 46 52.2


User provided reference genes

Program Settings