Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_11399 Sequoiadendron giganteum HOM05D000198 ORTHO05D003365 5.7e-49 197.2 96 100.0
SEGI_04570 Sequoiadendron giganteum HOM05D005797 ORTHO05D006479 1.1e-12 76.6 40 92.5
MSTRG.11428 Avicennia marina HOM05D000198 ORTHO05D003365 3.1e-10 68.6 39 71.8
CDE06G2133 Ceratophyllum demersum HOM05D000198 ORTHO05D003365 6.8e-10 67.4 39 66.7
Ah.11g046210 Amaranthus hybridus HOM05D000198 ORTHO05D003365 8.9e-10 67.0 39 69.2
HanXRQChr09g0271671 Helianthus annuus HOM05D000198 ORTHO05D003365 8.9e-10 67.0 39 69.2
Sc12g0005650 Simmondsia chinensis HOM05D000198 ORTHO05D003365 8.9e-10 67.0 37 73.0
AUR62031047 Chenopodium quinoa HOM05D000198 ORTHO05D003365 1.5e-09 66.2 39 69.2
vmacro19355 Vaccinium macrocarpon HOM05D000198 ORTHO05D003365 1.5e-09 66.2 39 69.2
CAN.G853.16 Capsicum annuum HOM05D000198 ORTHO05D003365 2.0e-09 65.9 37 70.3
ClCG06G016680 Citrullus lanatus HOM05D000198 ORTHO05D003365 2.0e-09 65.9 39 69.2
SalBow5G1824 Salvia bowleyana HOM05D000198 ORTHO05D003365 2.0e-09 65.9 39 69.2
Ah.11g046200 Amaranthus hybridus HOM05D000198 ORTHO05D003365 3.4e-09 65.1 39 69.2
MELO3C017125.2 Cucumis melo HOM05D000198 ORTHO05D003365 4.4e-09 64.7 39 69.2
CsaV3_1G001830 Cucumis sativus L. HOM05D000198 ORTHO05D003365 4.4e-09 64.7 39 69.2
Glyma.06G186300 Glycine max HOM05D000198 ORTHO05D003365 4.4e-09 64.7 37 70.3
Nitab4.5_0003386g0060 Nicotiana tabacum HOM05D000198 ORTHO05D003365 4.4e-09 64.7 37 73.0
Prupe.5G179700 Prunus persica HOM05D000198 ORTHO05D003365 4.4e-09 64.7 39 69.2
MSTRG.4388 Avicennia marina HOM05D000198 ORTHO05D003365 5.8e-09 64.3 39 64.1
CSS0036645 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D003365 5.8e-09 64.3 39 69.2
HanXRQChr05g0155461 Helianthus annuus HOM05D000198 ORTHO05D003365 5.8e-09 64.3 39 71.8
AagrBONN_evm.TU.Sc2ySwM_228.504 Anthoceros agrestis HOM05D000198 ORTHO05D003365 7.6e-09 63.9 39 69.2
EL10Ac5g10835 Beta vulgaris HOM05D000198 ORTHO05D003365 7.6e-09 63.9 39 69.2
Lsat_1_v5_gn_4_73580 Lactuca sativa HOM05D000198 ORTHO05D003365 7.6e-09 63.9 39 64.1
Nitab4.5_0005655g0040 Nicotiana tabacum HOM05D000198 ORTHO05D003365 7.6e-09 63.9 35 77.1
Hund20245 Selenicereus undatus HOM05D000198 ORTHO05D003365 7.6e-09 63.9 39 64.1
Dinv20700 Davidia involucrata HOM05D000198 ORTHO05D003365 9.9e-09 63.5 39 69.2
MD14G1187300 Malus domestica HOM05D000198 ORTHO05D003365 9.9e-09 63.5 39 66.7
Peaxi162Scf00689g00420 Petunia axillaris HOM05D000198 ORTHO05D003365 9.9e-09 63.5 41 68.3
VMungo1309G2302 Vigna mungo HOM05D000198 ORTHO05D003365 9.9e-09 63.5 39 61.5
EL10Ac5g10834 Beta vulgaris HOM05D000198 ORTHO05D003365 1.3e-08 63.2 39 66.7
EL10Ac7g18109 Beta vulgaris HOM05D000198 ORTHO05D003365 1.3e-08 63.2 39 66.7
Phvul.009G182300 Phaseolus vulgaris HOM05D000198 ORTHO05D003365 1.3e-08 63.2 39 61.5
SalBow3G4247 Salvia bowleyana HOM05D000198 ORTHO05D003365 1.3e-08 63.2 39 64.1
Aqoxy3G03122 Aquilegia oxysepala HOM05D000198 ORTHO05D003365 1.7e-08 62.8 39 69.2
MSTRG.9663 Avicennia marina HOM05D000198 ORTHO05D003365 1.7e-08 62.8 39 61.5
Gohir.D07G067600 Gossypium hirsutum HOM05D000198 ORTHO05D003365 1.7e-08 62.8 39 66.7
Gorai.001G071200 Gossypium raimondii HOM05D000198 ORTHO05D003365 1.7e-08 62.8 39 66.7
MD06G1181400 Malus domestica HOM05D000198 ORTHO05D003365 1.7e-08 62.8 39 69.2
Peaxi162Scf00017g02622 Petunia axillaris HOM05D000198 ORTHO05D003365 1.7e-08 62.8 37 70.3
Potri.015G070600 Populus trichocarpa HOM05D000198 ORTHO05D003365 2.2e-08 62.4 39 64.1
Sed0010361 Sechium edule HOM05D000198 ORTHO05D003365 2.2e-08 62.4 39 66.7
AL2G34800 Arabidopsis lyrata HOM05D000198 ORTHO05D003365 2.9e-08 62.0 39 64.1
Lj5C120T17 Lonicera japonica HOM05D000198 ORTHO05D003365 2.9e-08 62.0 39 61.5
Rhsim08G0167500 Rhododendron simsii HOM05D000198 ORTHO05D003365 2.9e-08 62.0 37 67.6
Rhsim08G0167700 Rhododendron simsii HOM05D000198 ORTHO05D003365 2.9e-08 62.0 39 64.1
Solyc03g113800.3 Solanum lycopersicum HOM05D000198 ORTHO05D003365 2.9e-08 62.0 35 71.4
PGSC0003DMG400024582 Solanum tuberosum HOM05D000198 ORTHO05D003365 2.9e-08 62.0 35 71.4
Atru.chr9.2400 Acer truncatum HOM05D000198 ORTHO05D003365 3.8e-08 61.6 39 69.2
AT1G74920 Arabidopsis thaliana HOM05D000198 ORTHO05D003365 3.8e-08 61.6 39 64.1
BcaB02g06972 Brassica carinata HOM05D000198 ORTHO05D003365 3.8e-08 61.6 39 61.5
A07p29170 Brassica napus HOM05D000198 ORTHO05D003365 3.8e-08 61.6 39 61.5
BraA07t30556Z Brassica rapa HOM05D000198 ORTHO05D003365 3.8e-08 61.6 39 61.5
Gohir.A07G063000 Gossypium hirsutum HOM05D000198 ORTHO05D003365 3.8e-08 61.6 39 66.7
Hma1.2p1_0002F.1_g002875 Hydrangea macrophylla HOM05D000198 ORTHO05D003365 3.8e-08 61.6 39 64.1
MBI14_g15699_MAGBIO Magnolia biondii HOM05D000198 ORTHO05D003365 3.8e-08 61.6 39 66.7
MD14G1187400 Malus domestica HOM05D000198 ORTHO05D003365 3.8e-08 61.6 39 64.1
SGA_v2.0_scaffold7G04110 Striga asiatica HOM05D000198 ORTHO05D003365 3.8e-08 61.6 38 63.2
THA.LOC104818220 Tarenaya hassleriana HOM05D000198 ORTHO05D003365 3.8e-08 61.6 39 61.5
TAR629G0665 Trochodendron aralioides HOM05D000198 ORTHO05D003365 3.8e-08 61.6 39 64.1
Aa31LG4G5130 Aethionema arabicum HOM05D000198 ORTHO05D003365 4.9e-08 61.2 37 67.6
QL10p012294 Quercus lobata HOM05D000198 ORTHO05D003365 4.9e-08 61.2 39 64.1
Cfa019065 Carpinus fangiana HOM05D000198 ORTHO05D003365 6.4e-08 60.8 39 64.1
Haze_07435 Corylus avellana HOM05D000198 ORTHO05D003365 6.4e-08 60.8 39 61.5
Nitab4.5_0002101g0060 Nicotiana tabacum HOM05D000198 ORTHO05D003365 6.4e-08 60.8 37 64.9
Sopen03g032850 Solanum pennellii HOM05D000198 ORTHO05D003365 6.4e-08 60.8 35 68.6
Carub.0002s2171 Capsella rubella HOM05D000198 ORTHO05D003365 8.4e-08 60.5 39 61.5
Hma1.2p1_0849F.1_g228096 Hydrangea macrophylla HOM05D000198 ORTHO05D003365 8.4e-08 60.5 39 61.5
Actinidia04957 Actinidia chinensis HOM05D000198 ORTHO05D003365 1.1e-07 60.1 39 64.1
Sed0016621 Sechium edule HOM05D000198 ORTHO05D003365 1.1e-07 60.1 39 64.1
GSVIVG01032588001 Vitis vinifera HOM05D000198 ORTHO05D003365 1.1e-07 60.1 40 62.5
CiPaw.11G032300 Carya illinoinensis HOM05D000198 ORTHO05D003365 1.4e-07 59.7 39 64.1
AUR62008285 Chenopodium quinoa HOM05D000198 ORTHO05D003365 1.4e-07 59.7 37 67.6
AUR62031049 Chenopodium quinoa HOM05D000198 ORTHO05D003365 1.4e-07 59.7 37 67.6
Nitab4.5_0000003g0280 Nicotiana tabacum HOM05D000198 ORTHO05D003365 1.4e-07 59.7 37 64.9
RcHm_v2.0_Chr7g0179781 Rosa chinensis HOM05D000198 ORTHO05D003365 1.4e-07 59.7 39 64.1
arahy.Tifrunner.gnm1.ann1.M4G3QU Arachis hypogaea HOM05D000198 ORTHO05D003365 1.9e-07 59.3 39 56.4
Cc04_g13600 Coffea canephora HOM05D000198 ORTHO05D003365 1.9e-07 59.3 39 59.0
Duzib205G0810 Durio zibethinus HOM05D000198 ORTHO05D003365 1.9e-07 59.3 39 61.5
MD06G1181500 Malus domestica HOM05D000198 ORTHO05D003365 1.9e-07 59.3 37 67.6
Prupe.5G179800 Prunus persica HOM05D000198 ORTHO05D003365 1.9e-07 59.3 39 61.5
QL02p078556 Quercus lobata HOM05D000198 ORTHO05D003365 1.9e-07 59.3 39 61.5
Sabra15G0094900 Salix brachista HOM05D000198 ORTHO05D003365 1.9e-07 59.3 39 59.0
GSVIVG01007829001 Vitis vinifera HOM05D000198 ORTHO05D003365 1.9e-07 59.3 39 66.7
CARHR068240 Cardamine hirsuta HOM05D000198 ORTHO05D003365 2.4e-07 58.9 39 61.5
Duzib068G0738 Durio zibethinus HOM05D000198 ORTHO05D003365 2.4e-07 58.9 39 61.5
Eucgr.B00336 Eucalyptus grandis HOM05D000198 ORTHO05D003365 2.4e-07 58.9 37 62.2
Sabra15G0095800 Salix brachista HOM05D000198 ORTHO05D003365 2.4e-07 58.9 39 56.4
Solyc06g071290.3 Solanum lycopersicum HOM05D000198 ORTHO05D003365 2.4e-07 58.9 35 68.6
Sopen06g027590 Solanum pennellii HOM05D000198 ORTHO05D003365 2.4e-07 58.9 35 68.6
THA.LOC104817887 Tarenaya hassleriana HOM05D000198 ORTHO05D003365 2.4e-07 58.9 39 59.0
Thecc.03G003100 Theobroma cacao HOM05D000198 ORTHO05D003365 2.4e-07 58.9 39 64.1
HPP92_010830 Vanilla planifolia HOM05D000198 ORTHO05D003365 2.4e-07 58.9 39 59.0
HPP92_010832 Vanilla planifolia HOM05D000198 ORTHO05D003365 2.4e-07 58.9 39 59.0
ATR0712G173 Amborella trichopoda HOM05D000198 ORTHO05D003365 3.2e-07 58.5 39 59.0
Carub.0005s1427 Capsella rubella HOM05D000198 ORTHO05D003365 3.2e-07 58.5 37 62.2
FAN04G2709 Fragaria x ananassa HOM05D000198 ORTHO05D003365 3.2e-07 58.5 39 61.5
Os08g0424500 Oryza sativa ssp. japonica HOM05D000198 ORTHO05D003365 3.2e-07 58.5 39 64.1
arahy.Tifrunner.gnm1.ann1.59SDUF Arachis hypogaea HOM05D000198 ORTHO05D003365 4.2e-07 58.2 39 59.0
arahy.Tifrunner.gnm1.ann1.JTTA2P Arachis hypogaea HOM05D000198 ORTHO05D003365 4.2e-07 58.2 39 56.4
arahy.Tifrunner.gnm1.ann1.QCS9HL Arachis hypogaea HOM05D000198 ORTHO05D003365 4.2e-07 58.2 39 59.0
Lalb_Chr07g0182521 Lupinus albus HOM05D000198 ORTHO05D003365 4.2e-07 58.2 39 53.8
Lalb_Chr13g0297971 Lupinus albus HOM05D000198 ORTHO05D003365 4.2e-07 58.2 39 53.8
PSO478G0541 Papaver somniferum HOM05D000198 ORTHO05D003365 4.2e-07 58.2 39 61.5
CAN.G628.66 Capsicum annuum HOM05D000198 ORTHO05D003365 5.4e-07 57.8 33 69.7
Ciclev10019800m.g Citrus clementina HOM05D000198 ORTHO05D003365 5.4e-07 57.8 39 56.4
Lalb_Chr07g0182551 Lupinus albus HOM05D000198 ORTHO05D003365 5.4e-07 57.8 39 53.8
PGR083G0053 Punica granatum HOM05D000198 ORTHO05D003365 5.4e-07 57.8 39 59.0
THA.LOC104821472 Tarenaya hassleriana HOM05D000198 ORTHO05D003365 5.4e-07 57.8 39 61.5
Duzib068G1286 Durio zibethinus HOM05D000198 ORTHO05D003365 7.1e-07 57.4 39 59.0
Migut.D01906 Erythranthe guttata HOM05D000198 ORTHO05D003365 7.1e-07 57.4 40 57.5
Thhalv10018437m.g Eutrema salsugineum HOM05D000198 ORTHO05D003365 7.1e-07 57.4 37 62.2
PSO161G0059 Papaver somniferum HOM05D000198 ORTHO05D003365 7.1e-07 57.4 39 59.0
Prupe.3G277000 Prunus persica HOM05D000198 ORTHO05D003365 7.1e-07 57.4 39 59.0
Zm00001eb041930 Zea mays HOM05D000198 ORTHO05D003365 7.1e-07 57.4 35 60.0
Potri.012G075600 Populus trichocarpa HOM05D000198 ORTHO05D003365 9.3e-07 57.0 39 61.5
Sabra12G0053800 Salix brachista HOM05D000198 ORTHO05D003365 9.3e-07 57.0 39 61.5
TWI15G0338 Tripterygium wilfordii HOM05D000198 ORTHO05D003365 9.3e-07 57.0 39 61.5
TWI60G0566 Tripterygium wilfordii HOM05D000198 ORTHO05D003365 9.3e-07 57.0 39 61.5
C06p33060 Brassica napus HOM05D000198 ORTHO05D003365 1.2e-06 56.6 33 63.6
BolC6t38422H Brassica oleracea HOM05D000198 ORTHO05D003365 1.2e-06 56.6 33 63.6
CAN.G375.75 Capsicum annuum HOM05D000444 ORTHO05D003365 1.2e-06 56.6 33 66.7
Glyma.05G033500 Glycine max HOM05D000198 ORTHO05D003365 1.2e-06 56.6 39 53.8
Medtr4g106510 Medicago truncatula HOM05D000198 ORTHO05D003365 1.2e-06 56.6 39 56.4
Sp5g30060 Schrenkiella parvula HOM05D000198 ORTHO05D003365 1.2e-06 56.6 37 62.2
VMungo1215G3368 Vigna mungo HOM05D000198 ORTHO05D003365 1.2e-06 56.6 39 53.8
FvH4_5g16350 Fragaria vesca HOM05D000198 ORTHO05D003365 1.6e-06 56.2 39 59.0
FAN18G3532 Fragaria x ananassa HOM05D000198 ORTHO05D003365 1.6e-06 56.2 39 59.0
PGSC0003DMG400033028 Solanum tuberosum HOM05D000198 ORTHO05D003365 1.6e-06 56.2 37 64.9
Manes.06G100200 Manihot esculenta HOM05D000198 ORTHO05D003365 2.1e-06 55.8 39 56.4
Medtr3g078490 Medicago truncatula HOM05D000198 ORTHO05D003365 2.1e-06 55.8 41 56.1
Oeu005688.1 Olea europaea HOM05D000198 ORTHO05D003365 2.1e-06 55.8 37 62.2
Psat4g055120 Pisum sativum HOM05D000198 ORTHO05D003365 2.1e-06 55.8 39 56.4
BraA06t25682Z Brassica rapa HOM05D000198 ORTHO05D003365 2.7e-06 55.5 37 56.8
ECA232G3153 Erigeron canadensis HOM05D002643 ORTHO05D003365 2.7e-06 55.5 33 69.7
PGR083G1998 Punica granatum HOM05D000198 ORTHO05D003365 2.7e-06 55.5 39 56.4
CANSAT80G1940 Cannabis sativa HOM05D000198 ORTHO05D003365 3.5e-06 55.1 40 57.5
Thecc.03G003200 Theobroma cacao HOM05D000198 ORTHO05D003365 3.5e-06 55.1 37 59.5
Gohir.A11G040800 Gossypium hirsutum HOM05D000198 ORTHO05D003365 4.6e-06 54.7 39 56.4
Gorai.007G047400 Gossypium raimondii HOM05D000198 ORTHO05D003365 4.6e-06 54.7 39 56.4
Psat0s4962g0080 Pisum sativum HOM05D000198 ORTHO05D003365 4.6e-06 54.7 39 59.0
Medtr3g078550 Medicago truncatula HOM05D000198 ORTHO05D003365 6.0e-06 54.3 39 56.4
Phvul.003G196700 Phaseolus vulgaris HOM05D000198 ORTHO05D003365 6.0e-06 54.3 39 53.8
Pp3c5_22400 Physcomitrium patens HOM05D000198 ORTHO05D003365 6.0e-06 54.3 35 57.1
unitig_60.g25414 Utricularia gibba HOM05D000198 ORTHO05D003365 7.8e-06 53.9 33 69.7


User provided reference genes

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