Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 5.1e-203 711.4 539 100.0
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 2.4e-104 383.6 557 61.6
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 2.1e-103 380.6 558 64.3
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 4.6e-103 379.4 548 59.1
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 1.0e-102 378.3 554 59.7
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 6.6e-102 375.6 555 60.7
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.5e-101 374.4 555 60.7
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 5.2e-99 365.9 562 58.7
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 5.2e-99 365.9 545 54.5
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 8.9e-99 365.2 553 58.8
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 1.5e-98 364.4 557 58.2
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 3.4e-98 363.2 550 58.4
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 3.4e-98 363.2 553 54.8
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 9.9e-98 361.7 557 58.0
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 1.3e-97 361.3 555 63.8
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 2.2e-97 360.5 557 56.4
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 4.9e-97 359.4 560 57.5
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 4.9e-97 359.4 551 55.5
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.1e-96 358.2 554 54.9
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 4.1e-96 356.3 556 54.5
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 5.4e-96 355.9 565 61.4
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 9.2e-96 355.1 555 57.5
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 9.2e-96 355.1 599 54.1
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 2.1e-95 354.0 546 58.8
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.1e-95 354.0 557 60.0
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 2.7e-95 353.6 546 58.2
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 5.1e-94 349.4 559 58.3
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 6.6e-94 349.0 558 52.7
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 1.5e-93 347.8 570 56.5
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 2.5e-93 347.1 563 56.8
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 4.3e-93 346.3 554 55.2
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 5.6e-93 345.9 555 58.7
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 1.2e-92 344.7 552 54.9
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 3.6e-92 343.2 555 56.4
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 1.1e-91 341.7 555 58.2
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 1.1e-91 341.7 551 55.2
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.1e-91 341.7 551 55.0
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 1.8e-91 340.9 556 58.5
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 3.1e-91 340.1 556 53.2
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 4.0e-91 339.7 555 59.3
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 8.9e-91 338.6 545 57.4
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 1.2e-90 338.2 552 53.8
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 2.6e-90 337.0 557 60.5
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 3.4e-90 336.7 558 54.1
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 5.8e-90 335.9 549 54.8
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 7.6e-90 335.5 564 57.1
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.3e-89 334.7 558 58.8
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 1.3e-89 334.7 552 56.3
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 3.8e-89 333.2 557 55.5
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.8e-89 333.2 552 56.3
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 1.1e-88 331.6 548 57.3
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 1.1e-88 331.6 562 53.9
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 1.4e-88 331.3 557 51.7
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.4e-88 331.3 548 57.1
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 1.9e-88 330.9 551 56.8
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 1.9e-88 330.9 550 61.5
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 5.4e-88 329.3 565 58.9
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 7.1e-88 328.9 558 57.9
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 1.2e-87 328.2 581 56.8
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 2.7e-87 327.0 580 51.0
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 3.5e-87 326.6 549 56.5
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 3.5e-87 326.6 547 58.5
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 3.5e-87 326.6 556 54.7
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.7e-86 324.3 552 56.3
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 3.0e-86 323.6 561 52.4
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 1.1e-85 321.6 568 53.2
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 1.1e-85 321.6 551 57.5
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 3.3e-85 320.1 560 52.5
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 3.3e-85 320.1 554 60.1
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 4.3e-85 319.7 545 52.1
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 2.1e-84 317.4 570 52.1
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 3.6e-84 316.6 588 56.5
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 4.8e-84 316.2 549 57.7
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 6.2e-84 315.8 541 48.6
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 1.4e-83 314.7 558 58.1
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 1.2e-82 311.6 556 52.2
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 5.8e-82 309.3 565 55.0
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 7.6e-82 308.9 571 55.3
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 9.9e-82 308.5 553 55.5
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.7e-81 307.8 581 47.7
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 2.9e-81 307.0 550 56.7
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 2.9e-81 307.0 558 58.4
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 6.4e-81 305.8 532 59.0
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.4e-80 304.7 551 54.3
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 1.9e-80 304.3 553 56.1
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 1.9e-80 304.3 559 60.1
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 3.2e-80 303.5 546 56.8
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 4.2e-80 303.1 567 49.4
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 1.2e-79 301.6 559 60.3
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.2e-79 301.6 550 56.2
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 4.6e-79 299.7 564 53.5
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.3e-78 298.1 551 56.8
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 8.7e-78 295.4 590 57.5
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 1.6e-76 291.2 600 50.7
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.0e-75 286.6 168 88.7
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 6.9e-75 285.8 551 49.5
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 9.0e-75 285.4 164 89.6
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.7e-73 281.2 560 48.6
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 3.5e-71 273.5 582 45.9
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.0e-70 271.9 170 82.4
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 2.3e-70 270.8 559 51.0
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 2.3e-70 270.8 566 51.2
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 8.7e-70 268.9 565 51.9
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.1e-69 268.5 554 50.5
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 7.4e-69 265.8 170 82.4
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 1.6e-68 264.6 547 51.9
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 6.2e-68 262.7 175 79.4
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 1.8e-67 261.2 603 43.9
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 1.8e-67 261.2 562 50.4
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 3.1e-67 260.4 579 49.6
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 6.9e-67 259.2 565 44.8
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 1.5e-66 258.1 564 49.1
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 1.7e-65 254.6 484 53.7
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 1.4e-64 251.5 154 84.4
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 7.1e-64 249.2 558 49.1
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 3.1e-59 233.8 154 78.6
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 3.0e-54 217.2 562 44.3
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 6.7e-54 216.1 165 73.9
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 4.1e-51 206.8 477 52.4
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.0e-49 202.2 535 38.5
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.4e-48 198.4 494 44.5
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 6.3e-44 183.0 114 82.5
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 8.2e-44 182.6 470 46.2
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.5e-42 178.3 501 50.9
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 3.3e-37 160.6 507 43.8
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 7.4e-37 159.5 122 73.0
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 7.4e-37 159.5 96 88.5
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 4.2e-32 143.7 444 42.3
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.2e-26 125.6 74 82.4
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 1.6e-26 125.2 81 74.1
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 2.5e-24 117.9 104 68.3
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 4.7e-23 113.6 74 81.1
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 6.1e-23 113.2 95 70.5
SEGI_10093 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.4e-22 112.1 74 78.4
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.4e-22 112.1 75 76.0
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.8e-22 111.7 106 58.5
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 1.8e-22 111.7 113 61.1
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 4.0e-22 110.5 100 69.0
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 5.2e-22 110.2 121 57.0
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 2.0e-21 108.2 100 67.0
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 2.6e-21 107.8 103 66.0
SEGI_19875 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.7e-20 105.1 79 75.9
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.1e-19 102.4 64 82.8
SEGI_11586 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 5.4e-19 100.1 69 79.7
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 7.0e-19 99.8 167 40.1
SEGI_18830 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.0e-17 95.9 67 80.6
SEGI_09441 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 6.5e-17 93.2 63 82.5
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 2.5e-16 91.3 103 56.3
SEGI_22328 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 4.2e-16 90.5 71 76.1
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 2.0e-13 81.6 58 79.3
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 7.5e-13 79.7 46 89.1
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 1.3e-12 79.0 86 55.8
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.1e-07 61.6 71 60.6
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.1e-07 61.6 71 60.6
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 2.3e-06 58.2 164 30.5


User provided reference genes

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