Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_11088 Sequoiadendron giganteum HOM05D002414 ORTHO05D002531 1.7e-112 409.5 222 100.0
CiPaw.01G291400 Carya illinoinensis HOM05D002414 ORTHO05D002531 2.1e-17 93.6 100 45.0
Hma1.2p1_0026F.1_g016280 Hydrangea macrophylla HOM05D002414 ORTHO05D002531 2.7e-17 93.2 104 45.2
QL08p061332 Quercus lobata HOM05D002414 ORTHO05D002531 7.8e-17 91.7 101 45.5
Cc02_g07420 Coffea canephora HOM05D002414 ORTHO05D002531 1.0e-16 91.3 104 45.2
ECA233G4115 Erigeron canadensis HOM05D002414 ORTHO05D002531 3.9e-16 89.4 98 46.9
Peaxi162Scf00658g00422 Petunia axillaris HOM05D002414 ORTHO05D002531 1.5e-15 87.4 100 44.0
THA.LOC104810046 Tarenaya hassleriana HOM05D002414 ORTHO05D002531 1.5e-15 87.4 93 48.4
Aa31LG5G19910 Aethionema arabicum HOM05D002414 ORTHO05D002531 1.9e-15 87.0 93 48.4
Dinv26046 Davidia involucrata HOM05D002414 ORTHO05D002531 1.9e-15 87.0 100 47.0
Lsat_1_v5_gn_8_14881 Lactuca sativa HOM05D002414 ORTHO05D002531 1.9e-15 87.0 103 43.7
Nn2g13475 Nelumbo nucifera HOM05D002414 ORTHO05D002531 1.9e-15 87.0 100 44.0
Sopen06g017790 Solanum pennellii HOM05D002414 ORTHO05D002531 1.9e-15 87.0 100 45.0
Atru.chr12.362 Acer truncatum HOM05D002414 ORTHO05D002531 4.3e-15 85.9 100 45.0
Manes.10G026300 Manihot esculenta HOM05D002414 ORTHO05D002531 4.3e-15 85.9 101 44.6
PGSC0003DMG401023823 Solanum tuberosum HOM05D002414 ORTHO05D002531 5.6e-15 85.5 100 44.0
Eucgr.G02961 Eucalyptus grandis HOM05D002414 ORTHO05D002531 7.3e-15 85.1 93 41.9
Hma1.2p1_0039F.1_g024510 Hydrangea macrophylla HOM05D002414 ORTHO05D002531 7.3e-15 85.1 102 41.2
Nitab4.5_0005829g0010 Nicotiana tabacum HOM05D002414 ORTHO05D002531 7.3e-15 85.1 100 42.0
Atru.chr12.379 Acer truncatum HOM05D002414 ORTHO05D002531 9.6e-15 84.7 100 44.0
Actinidia02921 Actinidia chinensis HOM05D002414 ORTHO05D002531 9.6e-15 84.7 100 43.0
TWI63G1558 Tripterygium wilfordii HOM05D002414 ORTHO05D002531 9.6e-15 84.7 93 46.2
Haze_17118 Corylus avellana HOM05D002414 ORTHO05D002531 1.3e-14 84.3 98 41.8
Aqoxy2G02338 Aquilegia oxysepala HOM05D002414 ORTHO05D002531 1.6e-14 84.0 107 43.0
CAN.G608.2 Capsicum annuum HOM05D002414 ORTHO05D002531 2.1e-14 83.6 106 41.5
Lj2g0015546 Lotus japonicus HOM05D002414 ORTHO05D002531 2.8e-14 83.2 98 41.8
Lj6g0023303 Lotus japonicus HOM05D002414 ORTHO05D002531 2.8e-14 83.2 98 41.8
Oeu039015.1 Olea europaea HOM05D002414 ORTHO05D002531 2.8e-14 83.2 98 42.9
HanXRQChr08g0221161 Helianthus annuus HOM05D002414 ORTHO05D002531 3.6e-14 82.8 115 39.1
Nitab4.5_0004074g0010 Nicotiana tabacum HOM05D002414 ORTHO05D002531 3.6e-14 82.8 102 40.2
QL08p061292 Quercus lobata HOM05D002414 ORTHO05D002531 3.6e-14 82.8 96 39.6
GSVIVG01016481001 Vitis vinifera HOM05D002414 ORTHO05D002531 3.6e-14 82.8 100 42.0
Aa31LG5G19900 Aethionema arabicum HOM05D002414 ORTHO05D002531 4.8e-14 82.4 95 43.2
arahy.Tifrunner.gnm1.ann1.AGZ93U Arachis hypogaea HOM05D002414 ORTHO05D002531 4.8e-14 82.4 98 41.8
Ciclev10031537m.g Citrus clementina HOM05D002414 ORTHO05D002531 4.8e-14 82.4 100 41.0
Potri.010G199500 Populus trichocarpa HOM05D002414 ORTHO05D002531 4.8e-14 82.4 98 42.9
Sp4g22010 Schrenkiella parvula HOM05D002414 ORTHO05D002531 4.8e-14 82.4 102 43.1
Thecc.10G039300 Theobroma cacao HOM05D002414 ORTHO05D002531 4.8e-14 82.4 98 43.9
arahy.Tifrunner.gnm1.ann1.8S2BPT Arachis hypogaea HOM05D002414 ORTHO05D002531 6.2e-14 82.0 98 42.9
CARHR134590 Cardamine hirsuta HOM05D002414 ORTHO05D002531 6.2e-14 82.0 93 45.2
QL08p061277 Quercus lobata HOM05D002414 ORTHO05D002531 6.2e-14 82.0 96 38.5
AT2G39740 Arabidopsis thaliana HOM05D002414 ORTHO05D002531 8.1e-14 81.6 93 44.1
Cfa001425 Carpinus fangiana HOM05D002414 ORTHO05D002531 8.1e-14 81.6 94 42.6
COL.COLO4_25492 Corchorus olitorius HOM05D002414 ORTHO05D002531 1.1e-13 81.3 94 44.7
Duzib106G1475 Durio zibethinus HOM05D002414 ORTHO05D002531 1.1e-13 81.3 98 43.9
SalBow5G5569 Salvia bowleyana HOM05D002414 ORTHO05D002531 1.1e-13 81.3 104 40.4
Cpa.g.sc19.271 Carica papaya HOM05D002414 ORTHO05D002531 1.8e-13 80.5 98 39.8
TAR623G0068 Trochodendron aralioides HOM05D002414 ORTHO05D002531 1.8e-13 80.5 81 49.4
ClCG07G003590 Citrullus lanatus HOM05D002414 ORTHO05D002531 2.4e-13 80.1 98 40.8
CsaV3_5G008390 Cucumis sativus L. HOM05D002414 ORTHO05D002531 2.4e-13 80.1 95 38.9
Glyma.18G034900 Glycine max HOM05D002414 ORTHO05D002531 2.4e-13 80.1 98 40.8
Phvul.001G236100 Phaseolus vulgaris HOM05D002414 ORTHO05D002531 2.4e-13 80.1 100 41.0
VMungo1383G2026 Vigna mungo HOM05D002414 ORTHO05D002531 2.4e-13 80.1 98 41.8
AL4G37210 Arabidopsis lyrata HOM05D002414 ORTHO05D002531 3.1e-13 79.7 93 43.0
CANSAT56G0766 Cannabis sativa HOM05D002414 ORTHO05D002531 3.1e-13 79.7 98 39.8
Oeu017562.1 Olea europaea HOM05D002414 ORTHO05D002531 3.1e-13 79.7 98 44.9
Lalb_Chr18g0053061 Lupinus albus HOM05D002414 ORTHO05D002531 4.0e-13 79.3 98 38.8
Os01g0846450 Oryza sativa ssp. japonica HOM05D002414 ORTHO05D002531 4.0e-13 79.3 96 41.7
Psat0s4218g0040 Pisum sativum HOM05D002414 ORTHO05D002531 4.0e-13 79.3 95 43.2
Sed0020180 Sechium edule HOM05D002414 ORTHO05D002531 4.0e-13 79.3 98 38.8
Carub.0004s2180 Capsella rubella HOM05D002414 ORTHO05D002531 5.3e-13 79.0 93 41.9
Lalb_Chr15g0084551 Lupinus albus HOM05D002414 ORTHO05D002531 5.3e-13 79.0 98 38.8
Pp3c9_24560 Physcomitrium patens HOM05D002414 ORTHO05D002531 5.3e-13 79.0 98 36.7
Pp3c9_24568 Physcomitrium patens HOM05D002414 ORTHO05D002531 5.3e-13 79.0 98 36.7
QL08p061313 Quercus lobata HOM05D002414 ORTHO05D002531 5.3e-13 79.0 96 37.5
Hund13795 Selenicereus undatus HOM05D002414 ORTHO05D002531 5.3e-13 79.0 93 44.1
Sc11g0007710 Simmondsia chinensis HOM05D002414 ORTHO05D002531 5.3e-13 79.0 93 44.1
ATR0559G259 Amborella trichopoda HOM05D002414 ORTHO05D002531 6.9e-13 78.6 89 43.8
Glyma.11G222700 Glycine max HOM05D002414 ORTHO05D002531 6.9e-13 78.6 98 39.8
PSO017G7355 Papaver somniferum HOM05D002414 ORTHO05D002531 6.9e-13 78.6 98 45.9
TAR369G0879 Trochodendron aralioides HOM05D002414 ORTHO05D002531 6.9e-13 78.6 98 40.8
PSO513G0123 Papaver somniferum HOM05D002414 ORTHO05D002531 9.0e-13 78.2 96 43.8
BcaB06g29102 Brassica carinata HOM05D002414 ORTHO05D002531 1.2e-12 77.8 86 45.3
Ca_08189_v3 Cicer arietinum L. HOM05D002414 ORTHO05D002531 1.2e-12 77.8 95 41.1
PSO339G0723 Papaver somniferum HOM05D002414 ORTHO05D002531 1.2e-12 77.8 101 43.6
PSO478G1772 Papaver somniferum HOM05D002414 ORTHO05D002531 1.2e-12 77.8 124 38.7
Prupe.2G239800 Prunus persica HOM05D002414 ORTHO05D002531 1.2e-12 77.8 100 39.0
AUR62012137 Chenopodium quinoa HOM05D002414 ORTHO05D002531 1.5e-12 77.4 99 42.4
Duzib114G0503 Durio zibethinus HOM05D002414 ORTHO05D002531 1.5e-12 77.4 98 38.8
SGA_v2.0_scaffold2G01047 Striga asiatica HOM05D002414 ORTHO05D002531 1.5e-12 77.4 106 40.6
AUR62040698 Chenopodium quinoa HOM05D002414 ORTHO05D002531 2.0e-12 77.0 99 42.4
MELO3C023887.2 Cucumis melo HOM05D002414 ORTHO05D002531 2.0e-12 77.0 96 37.5
Lj1C943T2 Lonicera japonica HOM05D002414 ORTHO05D002531 2.0e-12 77.0 98 41.8
A04p30290 Brassica napus HOM05D002414 ORTHO05D002531 2.6e-12 76.6 86 43.0
BraA04t18478Z Brassica rapa HOM05D002414 ORTHO05D002531 2.6e-12 76.6 86 43.0
Migut.F00748 Erythranthe guttata HOM05D002414 ORTHO05D002531 2.6e-12 76.6 100 39.0
Gohir.A10G222401 Gossypium hirsutum HOM05D002414 ORTHO05D002531 2.6e-12 76.6 100 39.0
Zm00001eb148120 Zea mays HOM05D002414 ORTHO05D002531 2.6e-12 76.6 92 39.1
Gohir.D10G234700 Gossypium hirsutum HOM05D002414 ORTHO05D002531 3.4e-12 76.3 98 39.8
BcaC02g07434 Brassica carinata HOM05D002414 ORTHO05D002531 4.5e-12 75.9 86 43.0
C04p67550 Brassica napus HOM05D002414 ORTHO05D002531 4.5e-12 75.9 86 43.0
BolC4t28252H Brassica oleracea HOM05D002414 ORTHO05D002531 4.5e-12 75.9 86 43.0
Gorai.011G268300 Gossypium raimondii HOM05D002414 ORTHO05D002531 4.5e-12 75.9 93 40.9
Sed0012358 Sechium edule HOM05D002414 ORTHO05D002531 4.5e-12 75.9 98 40.8
Thhalv10016564m.g Eutrema salsugineum HOM05D002414 ORTHO05D002531 7.6e-12 75.1 89 41.6
Os01g0846500 Oryza sativa ssp. japonica HOM05D002414 ORTHO05D002531 9.9e-12 74.7 100 40.0
MSTRG.27366 Avicennia marina HOM05D002414 ORTHO05D002531 1.3e-11 74.3 98 40.8
Medtr3g068215 Medicago truncatula HOM05D002414 ORTHO05D002531 1.3e-11 74.3 98 40.8
PGR142G0412 Punica granatum HOM05D002414 ORTHO05D002531 1.3e-11 74.3 86 40.7
RcHm_v2.0_Chr1g0368311 Rosa chinensis HOM05D002414 ORTHO05D002531 1.7e-11 73.9 98 39.8
HPP92_027009 Vanilla planifolia HOM05D002414 ORTHO05D002531 1.7e-11 73.9 94 39.4
QL08p061261 Quercus lobata HOM05D002414 ORTHO05D002531 2.2e-11 73.6 123 35.8
EL10Ac2g04700 Beta vulgaris HOM05D002414 ORTHO05D002531 2.9e-11 73.2 93 39.8
unitig_0.g1623 Utricularia gibba HOM05D002414 ORTHO05D002531 2.9e-11 73.2 67 49.3
FAN01G0953 Fragaria x ananassa HOM05D002414 ORTHO05D002531 6.4e-11 72.0 98 36.7
FAN01G2131 Fragaria x ananassa HOM05D002414 ORTHO05D002531 6.4e-11 72.0 98 36.7
FAN06G1983 Fragaria x ananassa HOM05D002414 ORTHO05D002531 6.4e-11 72.0 98 36.7
RcHm_v2.0_Chr1g0368321 Rosa chinensis HOM05D002414 ORTHO05D002531 6.4e-11 72.0 98 36.7
SEGI_03683 Sequoiadendron giganteum HOM05D000073 ORTHO05D000033 6.4e-11 72.0 53 71.7
SEGI_05402 Sequoiadendron giganteum HOM05D000531 ORTHO05D001630 6.4e-11 72.0 53 71.7
PSO339G1200 Papaver somniferum HOM05D002414 ORTHO05D002531 8.4e-11 71.6 91 45.1
HPP92_015384 Vanilla planifolia HOM05D002414 ORTHO05D002531 8.4e-11 71.6 94 37.2
Ah.10g037050 Amaranthus hybridus HOM05D002414 ORTHO05D002531 1.1e-10 71.2 83 42.2
FvH4_7g23070 Fragaria vesca HOM05D002414 ORTHO05D002531 1.1e-10 71.2 98 36.7
FAN06G0979 Fragaria x ananassa HOM05D002414 ORTHO05D002531 1.4e-10 70.9 98 35.7
FAN10G1514 Fragaria x ananassa HOM05D002414 ORTHO05D002531 1.9e-10 70.5 94 39.4
FAN10G3047 Fragaria x ananassa HOM05D002414 ORTHO05D002531 1.9e-10 70.5 94 39.4
FAN03G1385 Fragaria x ananassa HOM05D002414 ORTHO05D002531 3.2e-10 69.7 89 40.4
FAN01G1411 Fragaria x ananassa HOM05D002414 ORTHO05D002531 7.1e-10 68.6 89 40.4
FAN06G1258 Fragaria x ananassa HOM05D002414 ORTHO05D002531 7.1e-10 68.6 89 40.4
Rhsim03G0133800 Rhododendron simsii HOM05D002414 ORTHO05D002531 7.1e-10 68.6 74 47.3
Eucgr.J01229 Eucalyptus grandis HOM05D002414 ORTHO05D002531 1.2e-09 67.8 89 41.6
AagrBONN_evm.TU.Sc2ySwM_117.2729 Anthoceros agrestis HOM05D002414 ORTHO05D002531 1.6e-09 67.4 128 35.2
CBR_g34900 Chara braunii HOM05D002414 ORTHO05D002531 1.6e-09 67.4 100 32.0
PSO339G5487 Papaver somniferum HOM05D002414 ORTHO05D002531 1.6e-09 67.4 70 48.6
SMO141G0048 Selaginella moellendorffii HOM05D002414 ORTHO05D002531 1.6e-09 67.4 90 37.8
CDE02G1061 Ceratophyllum demersum HOM05D002414 ORTHO05D002531 7.9e-09 65.1 68 45.6
SEGI_29816 Sequoiadendron giganteum HOM05D001653 ORTHO05D001751 3.0e-08 63.2 79 59.5
MD01G1139300 Malus domestica HOM05D002414 ORTHO05D002531 3.9e-08 62.8 65 49.2
Mapoly0027s0117 Marchantia polymorpha HOM05D002414 ORTHO05D002531 6.7e-08 62.0 92 40.2
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 8.7e-08 61.6 44 68.2
SEGI_31808 Sequoiadendron giganteum HOM05D002403 ORTHO05D002724 1.9e-07 60.5 87 58.6
Aqoxy1G00847 Aquilegia oxysepala HOM05D002414 ORTHO05D002531 2.5e-07 60.1 96 34.4
Sabra10G0153800 Salix brachista HOM05D002414 ORTHO05D002531 2.5e-07 60.1 58 51.7
BcaC07g40204 Brassica carinata HOM05D002414 ORTHO05D002531 4.3e-07 59.3 61 45.9
SalBow5G0406 Salvia bowleyana HOM05D002414 ORTHO05D002531 2.1e-06 57.0 60 48.3
SEGI_06959 Sequoiadendron giganteum HOM05D002414 ORTHO05D002531 3.6e-06 56.2 31 90.3


User provided reference genes

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