Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_10974 Sequoiadendron giganteum HOM05D000341 ORTHO05D000557 2.4e-78 295.4 149 100.0
Ciclev10030081m.g Citrus clementina HOM05D000341 ORTHO05D000557 2.6e-08 62.8 60 45.0
MD05G1145500 Malus domestica HOM05D000341 ORTHO05D000557 7.6e-08 61.2 53 41.5
SEGI_03296 Sequoiadendron giganteum HOM05D000086 ORTHO05D011483 9.9e-08 60.8 62 46.8
Eucgr.D02311 Eucalyptus grandis HOM05D000341 ORTHO05D000557 1.3e-07 60.5 75 38.7
FvH4_3g04330 Fragaria vesca HOM05D000341 ORTHO05D000557 1.3e-07 60.5 54 42.6
MBI11_g24782_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D000557 1.3e-07 60.5 49 42.9
MBI11_g28739_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D000557 1.3e-07 60.5 48 43.8
SMO145G0233 Selaginella moellendorffii HOM05D000157 ORTHO05D000311 1.3e-07 60.5 54 51.9
FAN11G3879 Fragaria x ananassa HOM05D000341 ORTHO05D000557 2.9e-07 59.3 54 40.7
Manes.15G112900 Manihot esculenta HOM05D000341 ORTHO05D000557 2.9e-07 59.3 48 43.8
Nn5g28975 Nelumbo nucifera HOM05D000341 ORTHO05D000557 2.9e-07 59.3 61 42.6
Nn5g31360 Nelumbo nucifera HOM05D000341 ORTHO05D000557 2.9e-07 59.3 61 42.6
Ah.07g196480 Amaranthus hybridus HOM05D000341 ORTHO05D000557 4.9e-07 58.5 56 39.3
MSTRG.24801 Avicennia marina HOM05D000157 ORTHO05D000311 6.4e-07 58.2 69 42.0
FvH4_2g17190 Fragaria vesca HOM05D000341 ORTHO05D000557 6.4e-07 58.2 58 37.9
FAN15G0617 Fragaria x ananassa HOM05D000341 ORTHO05D000557 6.4e-07 58.2 58 37.9
FAN27G2552 Fragaria x ananassa HOM05D000341 ORTHO05D000557 6.4e-07 58.2 58 37.9
MD10G1144900 Malus domestica HOM05D000341 ORTHO05D000557 6.4e-07 58.2 50 44.0
ATR0661G501 Amborella trichopoda HOM05D000341 ORTHO05D000557 8.4e-07 57.8 73 35.6
MSTRG.21787 Avicennia marina HOM05D000157 ORTHO05D000311 8.4e-07 57.8 44 54.5
CARHR120650 Cardamine hirsuta HOM05D000157 ORTHO05D000311 8.4e-07 57.8 64 39.1
AUR62004389 Chenopodium quinoa HOM05D000341 ORTHO05D000557 8.4e-07 57.8 82 32.9
AUR62022596 Chenopodium quinoa HOM05D000341 ORTHO05D000557 8.4e-07 57.8 82 32.9
FAN25G2705 Fragaria x ananassa HOM05D000341 ORTHO05D000557 8.4e-07 57.8 54 40.7
Lj2P1086T54 Lonicera japonica HOM05D000157 ORTHO05D000311 8.4e-07 57.8 49 51.0
HPP92_014311 Vanilla planifolia HOM05D000440 ORTHO05D000295 8.4e-07 57.8 49 53.1
Ah.13g074800 Amaranthus hybridus HOM05D000157 ORTHO05D000311 1.1e-06 57.4 53 49.1
CiPaw.03G137400 Carya illinoinensis HOM05D000341 ORTHO05D000557 1.1e-06 57.4 58 39.7
Thhalv10029035m.g Eutrema salsugineum HOM05D000341 ORTHO05D000557 1.1e-06 57.4 49 40.8
Glyma.08G016700 Glycine max HOM05D000341 ORTHO05D000557 1.1e-06 57.4 65 38.5
Prupe.8G183300 Prunus persica HOM05D000341 ORTHO05D000557 1.1e-06 57.4 47 48.9
SGA_v2.0_scaffold181G39701 Striga asiatica HOM05D000341 ORTHO05D001197 1.1e-06 57.4 54 44.4
HPP92_000800 Vanilla planifolia HOM05D000086 ORTHO05D000431 1.1e-06 57.4 53 49.1
Aqoxy1G01044 Aquilegia oxysepala HOM05D000157 ORTHO05D000311 1.4e-06 57.0 59 45.8
FAN24G1152 Fragaria x ananassa HOM05D000341 ORTHO05D000557 1.4e-06 57.0 58 37.9
Glyma.05G210000 Glycine max HOM05D000341 ORTHO05D000557 1.4e-06 57.0 65 36.9
QL01p014780 Quercus lobata HOM05D000157 ORTHO05D000311 1.4e-06 57.0 72 43.1
SEGI_11264 Sequoiadendron giganteum HOM05D000354 ORTHO05D013627 1.4e-06 57.0 195 28.7
Thhalv10017824m.g Eutrema salsugineum HOM05D000157 ORTHO05D000295 1.9e-06 56.6 64 39.1
MBI19_g33998_MAGBIO Magnolia biondii HOM05D000341 ORTHO05D000557 1.9e-06 56.6 71 36.6
RcHm_v2.0_Chr6g0281681 Rosa chinensis HOM05D000341 ORTHO05D000557 1.9e-06 56.6 50 42.0
TAR625G1423 Trochodendron aralioides HOM05D000341 ORTHO05D000557 1.9e-06 56.6 61 37.7
AL4G22280 Arabidopsis lyrata HOM05D000157 ORTHO05D000311 2.4e-06 56.2 64 37.5
A07p18450 Brassica napus HOM05D000157 ORTHO05D000311 2.4e-06 56.2 64 37.5
CsaV3_3G034980 Cucumis sativus L. HOM05D000086 ORTHO05D009581 2.4e-06 56.2 66 42.4
Glyma.09G256800 Glycine max HOM05D000341 ORTHO05D000557 2.4e-06 56.2 48 41.7
Lsat_1_v5_gn_8_37881 Lactuca sativa HOM05D000341 ORTHO05D001197 2.4e-06 56.2 52 40.4
PSO339G3212 Papaver somniferum HOM05D000157 ORTHO05D000311 2.4e-06 56.2 54 46.3
Psat5g156840 Pisum sativum HOM05D000157 ORTHO05D000311 2.4e-06 56.2 55 52.7
SMO270G0110 Selaginella moellendorffii HOM05D000157 ORTHO05D000691 2.4e-06 56.2 47 46.8
SEGI_09453 Sequoiadendron giganteum HOM05D000341 ORTHO05D000557 2.4e-06 56.2 55 36.4
Aa31LG10G15510 Aethionema arabicum HOM05D000341 ORTHO05D000557 3.2e-06 55.8 48 41.7
Cpa.g.sc15.6 Carica papaya HOM05D000086 ORTHO05D002912 3.2e-06 55.8 64 40.6
CiPaw.06G097900 Carya illinoinensis HOM05D000341 ORTHO05D001197 3.2e-06 55.8 56 42.9
Dinv37186 Davidia involucrata HOM05D000330 ORTHO05D000209 3.2e-06 55.8 69 42.0
Glyma.07G036951 Glycine max HOM05D000086 ORTHO05D000431 3.2e-06 55.8 62 40.3
Hma1.2p1_0804F.1_g221080 Hydrangea macrophylla HOM05D000157 ORTHO05D000311 3.2e-06 55.8 85 38.8
Manes.18G141700 Manihot esculenta HOM05D000157 ORTHO05D000311 3.2e-06 55.8 54 53.7
PSO801G0745 Papaver somniferum HOM05D000157 ORTHO05D000311 3.2e-06 55.8 54 46.3
RcHm_v2.0_Chr7g0186121 Rosa chinensis HOM05D000086 ORTHO05D002912 3.2e-06 55.8 66 34.8
Aa31LG1G27470 Aethionema arabicum HOM05D000341 ORTHO05D000557 4.2e-06 55.5 48 39.6
Ah.12g051790 Amaranthus hybridus HOM05D000341 ORTHO05D000557 4.2e-06 55.5 52 38.5
A05p38160 Brassica napus HOM05D000086 ORTHO05D000311 4.2e-06 55.5 72 41.7
C05p56970 Brassica napus HOM05D000086 ORTHO05D000311 4.2e-06 55.5 72 41.7
BolC5t34360H Brassica oleracea HOM05D000086 ORTHO05D000311 4.2e-06 55.5 72 41.7
BraA05t22609Z Brassica rapa HOM05D000086 ORTHO05D000311 4.2e-06 55.5 72 41.7
BraA07t29561Z Brassica rapa HOM05D000157 ORTHO05D000311 4.2e-06 55.5 64 37.5
Psat7g031360 Pisum sativum HOM05D000341 ORTHO05D000557 4.2e-06 55.5 65 35.4
Sp3g09430 Schrenkiella parvula HOM05D000086 ORTHO05D000311 4.2e-06 55.5 66 43.9
HPP92_025199 Vanilla planifolia HOM05D000086 ORTHO05D000311 4.2e-06 55.5 51 47.1
VMungo0331G0453 Vigna mungo HOM05D000086 ORTHO05D000431 4.2e-06 55.5 55 45.5
Atru.chr5.3594 Acer truncatum HOM05D000341 ORTHO05D000557 5.5e-06 55.1 78 37.2
ATR0605G206 Amborella trichopoda HOM05D000341 ORTHO05D000557 5.5e-06 55.1 51 47.1
C03p54690 Brassica napus HOM05D000341 ORTHO05D001197 5.5e-06 55.1 59 40.7
CiPaw.05G095800 Carya illinoinensis HOM05D000341 ORTHO05D000557 5.5e-06 55.1 48 45.8
AUR62010717 Chenopodium quinoa HOM05D000341 ORTHO05D000557 5.5e-06 55.1 56 39.3
MELO3C009267.2 Cucumis melo HOM05D000086 ORTHO05D009581 5.5e-06 55.1 84 38.1
DCAR_002541 Daucus carota HOM05D000086 ORTHO05D002912 5.5e-06 55.1 74 36.5
DCAR_011484 Daucus carota HOM05D000341 ORTHO05D000557 5.5e-06 55.1 59 37.3
Glyma.18G235600 Glycine max HOM05D000341 ORTHO05D000557 5.5e-06 55.1 48 41.7
HanXRQChr15g0495921 Helianthus annuus HOM05D000157 ORTHO05D000691 5.5e-06 55.1 49 44.9
HanXRQChr16g0532091 Helianthus annuus HOM05D000440 ORTHO05D000295 5.5e-06 55.1 51 45.1
Lj6P662T51 Lonicera japonica HOM05D000086 ORTHO05D003081 5.5e-06 55.1 67 35.8
Lj4g0025211 Lotus japonicus HOM05D000086 ORTHO05D002912 5.5e-06 55.1 48 52.1
Lalb_Chr17g0345231 Lupinus albus HOM05D000157 ORTHO05D000311 5.5e-06 55.1 62 46.8
MD06G1111300 Malus domestica HOM05D000086 ORTHO05D002912 5.5e-06 55.1 66 33.3
Mapoly0002s0161 Marchantia polymorpha HOM05D000157 ORTHO05D000691 5.5e-06 55.1 49 46.9
Mapoly0044s0014 Marchantia polymorpha HOM05D000341 ORTHO05D000557 5.5e-06 55.1 51 41.2
Nn1g05242 Nelumbo nucifera HOM05D000341 ORTHO05D000557 5.5e-06 55.1 63 39.7
Phvul.008G060300 Phaseolus vulgaris HOM05D000341 ORTHO05D000557 5.5e-06 55.1 48 43.8
PGR004G2331 Punica granatum HOM05D000086 ORTHO05D000311 5.5e-06 55.1 60 45.0
Sed0012029 Sechium edule HOM05D000157 ORTHO05D000691 5.5e-06 55.1 52 46.2
Atru.chr9.1938 Acer truncatum HOM05D000086 ORTHO05D002912 7.1e-06 54.7 59 39.0
AT2G27940 Arabidopsis thaliana HOM05D000157 ORTHO05D000311 7.1e-06 54.7 64 35.9
arahy.Tifrunner.gnm1.ann1.8S0LND Arachis hypogaea HOM05D000341 ORTHO05D000557 7.1e-06 54.7 48 41.7
BolC3t16957H Brassica oleracea HOM05D000157 ORTHO05D000311 7.1e-06 54.7 75 38.7
BolC9t54576H Brassica oleracea HOM05D000341 ORTHO05D000557 7.1e-06 54.7 66 34.8
Cc08_g16350 Coffea canephora HOM05D000086 ORTHO05D002912 7.1e-06 54.7 64 39.1
Gorai.003G156500 Gossypium raimondii HOM05D000341 ORTHO05D000557 7.1e-06 54.7 47 40.4
Gorai.003G156700 Gossypium raimondii HOM05D000341 ORTHO05D000557 7.1e-06 54.7 47 40.4
Lalb_Chr05g0224601 Lupinus albus HOM05D000341 ORTHO05D000557 7.1e-06 54.7 65 33.8
MD06G1088300 Malus domestica HOM05D000341 ORTHO05D000557 7.1e-06 54.7 48 39.6
Medtr7g078150 Medicago truncatula HOM05D000341 ORTHO05D000557 7.1e-06 54.7 48 41.7
Oeu028316.1 Olea europaea HOM05D000157 ORTHO05D000311 7.1e-06 54.7 62 40.3
Phvul.010G132300 Phaseolus vulgaris HOM05D000086 ORTHO05D000431 7.1e-06 54.7 62 40.3
Pp3c19_14040 Physcomitrium patens HOM05D000086 ORTHO05D001775 7.1e-06 54.7 62 37.1
Potri.009G073900 Populus trichocarpa HOM05D000157 ORTHO05D000311 7.1e-06 54.7 54 48.1
Sabra05G0037200 Salix brachista HOM05D000157 ORTHO05D000691 7.1e-06 54.7 44 47.7
Sabra09G0055900 Salix brachista HOM05D000157 ORTHO05D000311 7.1e-06 54.7 54 48.1
Sabra16G0172900 Salix brachista HOM05D000157 ORTHO05D000311 7.1e-06 54.7 54 48.1
unitig_699.g19448 Utricularia gibba HOM05D000157 ORTHO05D000311 7.1e-06 54.7 49 44.9
HPP92_001488 Vanilla planifolia HOM05D000157 ORTHO05D000431 7.1e-06 54.7 53 43.4
VMungo0331G0235 Vigna mungo HOM05D000341 ORTHO05D000557 7.1e-06 54.7 48 39.6
AL4G33500 Arabidopsis lyrata HOM05D000187 ORTHO05D005916 9.3e-06 54.3 62 37.1
AL4G47140 Arabidopsis lyrata HOM05D000086 ORTHO05D000311 9.3e-06 54.3 47 51.1
AT2G47560 Arabidopsis thaliana HOM05D000086 ORTHO05D000311 9.3e-06 54.3 47 51.1
AT3G11110 Arabidopsis thaliana HOM05D000086 ORTHO05D000311 9.3e-06 54.3 70 38.6
arahy.Tifrunner.gnm1.ann1.59P1C9 Arachis hypogaea HOM05D000341 ORTHO05D000557 9.3e-06 54.3 48 41.7
C09p16750 Brassica napus HOM05D000341 ORTHO05D000557 9.3e-06 54.3 66 33.3
CARHR142970 Cardamine hirsuta HOM05D000086 ORTHO05D000311 9.3e-06 54.3 47 48.9
CARHR255210 Cardamine hirsuta HOM05D000341 ORTHO05D000557 9.3e-06 54.3 49 42.9
CiPaw.06G097800 Carya illinoinensis HOM05D000341 ORTHO05D001197 9.3e-06 54.3 56 42.9
Dinv38814 Davidia involucrata HOM05D000086 ORTHO05D002912 9.3e-06 54.3 49 44.9
Migut.M01343 Erythranthe guttata HOM05D000341 ORTHO05D001197 9.3e-06 54.3 51 45.1
FvH4_5g11670 Fragaria vesca HOM05D000086 ORTHO05D002912 9.3e-06 54.3 66 34.8
FAN03G3250 Fragaria x ananassa HOM05D000341 ORTHO05D000557 9.3e-06 54.3 86 30.2
FAN18G1358 Fragaria x ananassa HOM05D000086 ORTHO05D002912 9.3e-06 54.3 66 34.8
FAN18G4267 Fragaria x ananassa HOM05D000086 ORTHO05D002912 9.3e-06 54.3 66 34.8
Glyma.11G242500 Glycine max HOM05D000086 ORTHO05D000431 9.3e-06 54.3 66 40.9
Glyma.18G060500 Glycine max HOM05D000086 ORTHO05D000311 9.3e-06 54.3 60 46.7
Lsat_1_v5_gn_8_111181 Lactuca sativa HOM05D000157 ORTHO05D000311 9.3e-06 54.3 49 49.0
Lj1g0000139 Lotus japonicus HOM05D000341 ORTHO05D000557 9.3e-06 54.3 48 39.6
Lalb_Chr04g0252131 Lupinus albus HOM05D000157 ORTHO05D000311 9.3e-06 54.3 67 40.3
MD17G1105700 Malus domestica HOM05D000341 ORTHO05D001197 9.3e-06 54.3 54 37.0
Manes.02G200348 Manihot esculenta HOM05D000086 ORTHO05D002912 9.3e-06 54.3 65 33.8
Manes.11G021600 Manihot esculenta HOM05D000086 ORTHO05D000431 9.3e-06 54.3 52 50.0
Os12g0108350 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D000431 9.3e-06 54.3 45 46.7
PSO675G7078 Papaver somniferum HOM05D000440 ORTHO05D000295 9.3e-06 54.3 49 51.0
Prupe.5G124100 Prunus persica HOM05D000086 ORTHO05D002912 9.3e-06 54.3 66 33.3
QL04p067026 Quercus lobata HOM05D000341 ORTHO05D001197 9.3e-06 54.3 49 42.9
Sp3g12630 Schrenkiella parvula HOM05D000086 ORTHO05D000311 9.3e-06 54.3 59 42.4
SEGI_14160 Sequoiadendron giganteum HOM05D000086 ORTHO05D000311 9.3e-06 54.3 52 46.2
TAR628G0099 Trochodendron aralioides HOM05D000341 ORTHO05D000557 9.3e-06 54.3 54 44.4
unitig_748.g8108 Utricularia gibba HOM05D000341 ORTHO05D000557 9.3e-06 54.3 118 28.0


User provided reference genes

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