Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.3e-94 349.7 174 100.0
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 5.4e-21 105.1 79 62.0
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 1.2e-20 104.0 92 55.4
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 3.5e-20 102.4 74 60.8
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 4.5e-20 102.1 78 59.0
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 5.9e-20 101.7 78 59.0
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 5.9e-20 101.7 78 59.0
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 5.9e-20 101.7 74 60.8
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 5.9e-20 101.7 78 57.7
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 7.8e-20 101.3 75 66.7
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 7.8e-20 101.3 87 52.9
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 7.8e-20 101.3 102 52.0
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.0e-19 100.9 78 59.0
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.0e-19 100.9 89 55.1
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 1.0e-19 100.9 67 65.7
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.0e-19 100.9 67 65.7
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 1.3e-19 100.5 76 61.8
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 1.3e-19 100.5 59 69.5
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.7e-19 100.1 77 61.0
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.7e-19 100.1 74 62.2
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.3e-19 99.8 76 61.8
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 2.3e-19 99.8 87 52.9
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 2.9e-19 99.4 59 71.2
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 2.9e-19 99.4 101 51.5
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 3.8e-19 99.0 74 62.2
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 3.8e-19 99.0 69 63.8
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 5.0e-19 98.6 91 57.1
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 5.0e-19 98.6 83 56.6
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 5.0e-19 98.6 97 48.5
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 6.6e-19 98.2 81 54.3
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 6.6e-19 98.2 68 66.2
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 6.6e-19 98.2 74 60.8
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 6.6e-19 98.2 77 59.7
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 6.6e-19 98.2 74 58.1
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 6.6e-19 98.2 100 49.0
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 6.6e-19 98.2 91 51.6
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 6.6e-19 98.2 77 55.8
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 8.6e-19 97.8 76 57.9
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 8.6e-19 97.8 94 51.1
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 8.6e-19 97.8 78 56.4
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 8.6e-19 97.8 92 54.3
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 8.6e-19 97.8 87 55.2
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 1.1e-18 97.4 74 58.1
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 1.1e-18 97.4 78 56.4
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.5e-18 97.1 73 65.8
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 1.5e-18 97.1 77 59.7
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 1.5e-18 97.1 86 54.7
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.5e-18 97.1 74 63.5
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.9e-18 96.7 73 61.6
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.9e-18 96.7 61 68.9
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 1.9e-18 96.7 73 57.5
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.9e-18 96.7 97 49.5
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 1.9e-18 96.7 95 51.6
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 1.9e-18 96.7 89 52.8
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 1.9e-18 96.7 77 59.7
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 1.9e-18 96.7 67 62.7
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 1.9e-18 96.7 87 56.3
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 2.5e-18 96.3 89 50.6
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 2.5e-18 96.3 61 68.9
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 2.5e-18 96.3 73 63.0
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 2.5e-18 96.3 51 78.4
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 3.3e-18 95.9 47 83.0
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 3.3e-18 95.9 72 65.3
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 4.3e-18 95.5 69 63.8
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.3e-18 95.5 68 63.2
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.3e-18 95.5 68 63.2
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 4.3e-18 95.5 82 50.0
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 4.3e-18 95.5 70 60.0
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 4.3e-18 95.5 69 62.3
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 4.3e-18 95.5 51 76.5
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 4.3e-18 95.5 85 54.1
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 5.6e-18 95.1 88 48.9
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 5.6e-18 95.1 88 48.9
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 5.6e-18 95.1 88 48.9
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 5.6e-18 95.1 77 57.1
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 5.6e-18 95.1 71 56.3
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 7.3e-18 94.7 60 70.0
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 7.3e-18 94.7 68 63.2
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 7.3e-18 94.7 86 46.5
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 7.3e-18 94.7 64 68.8
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 7.3e-18 94.7 77 58.4
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 7.3e-18 94.7 77 58.4
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 9.5e-18 94.4 70 58.6
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 9.5e-18 94.4 80 57.5
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 9.5e-18 94.4 77 55.8
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 9.5e-18 94.4 77 57.1
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 9.5e-18 94.4 60 65.0
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 1.2e-17 94.0 65 64.6
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.2e-17 94.0 48 83.3
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.2e-17 94.0 64 68.8
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.6e-17 93.6 67 64.2
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.6e-17 93.6 74 55.4
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 2.1e-17 93.2 67 62.7
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 2.1e-17 93.2 49 75.5
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.1e-17 93.2 48 85.4
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 2.8e-17 92.8 87 51.7
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 2.8e-17 92.8 87 50.6
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 2.8e-17 92.8 76 59.2
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.8e-17 92.8 48 83.3
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 3.6e-17 92.4 90 45.6
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.6e-17 92.4 77 58.4
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 3.6e-17 92.4 59 66.1
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 3.6e-17 92.4 76 52.6
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 4.7e-17 92.0 102 44.1
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 4.7e-17 92.0 102 44.1
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.7e-17 92.0 86 47.7
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 4.7e-17 92.0 48 77.1
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 6.1e-17 91.7 90 47.8
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 6.1e-17 91.7 48 75.0
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 8.0e-17 91.3 78 50.0
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 8.0e-17 91.3 77 55.8
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 1.0e-16 90.9 84 48.8
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 1.0e-16 90.9 75 58.7
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.8e-16 90.1 87 48.3
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.8e-16 90.1 76 55.3
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.3e-16 89.7 90 48.9
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 3.0e-16 89.4 78 48.7
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 3.0e-16 89.4 78 48.7
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 3.0e-16 89.4 88 54.5
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 3.0e-16 89.4 90 48.9
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 4.0e-16 89.0 61 63.9
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 5.2e-16 88.6 84 47.6
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 5.2e-16 88.6 84 47.6
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 5.2e-16 88.6 84 47.6
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 5.2e-16 88.6 73 53.4
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 5.2e-16 88.6 48 72.9
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 6.8e-16 88.2 89 43.8
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 6.8e-16 88.2 89 43.8
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 6.8e-16 88.2 73 54.8
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 8.9e-16 87.8 47 74.5
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 1.2e-15 87.4 48 68.8
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.5e-15 87.0 70 55.7
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 1.5e-15 87.0 56 67.9
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 3.4e-15 85.9 89 49.4
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 5.8e-15 85.1 73 52.1
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 5.8e-15 85.1 73 52.1
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 2.0e-07 60.1 68 47.1


User provided reference genes

Program Settings