Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_10730 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 1.4e-116 422.9 213 100.0
SEGI_15898 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 6.1e-51 204.9 165 64.2
SEGI_13625 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 1.8e-50 203.4 165 64.8
SEGI_32988 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 1.8e-50 203.4 165 64.8
SEGI_25700 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 5.2e-26 122.1 175 41.7
SEGI_10412 Sequoiadendron giganteum HOM05D000127 ORTHO05D000792 6.8e-18 95.1 133 45.9
MBI10_g08546_MAGBIO Magnolia biondii HOM05D008294 ORTHO05D010468 1.2e-11 74.3 164 31.7
Peaxi162Scf00013g00098 Petunia axillaris HOM05D002803 ORTHO05D003089 3.1e-10 69.7 82 43.9
Glyma.17G121900 Glycine max HOM05D002803 ORTHO05D003089 6.8e-10 68.6 81 40.7
Eucgr.K02652 Eucalyptus grandis HOM05D002803 ORTHO05D003089 2.0e-09 67.0 125 37.6
GSVIVG01030864001 Vitis vinifera HOM05D008294 ORTHO05D010468 2.0e-09 67.0 152 29.6
Nn3g18213 Nelumbo nucifera HOM05D008294 ORTHO05D010468 2.6e-09 66.6 143 33.6
Atru.chr9.745 Acer truncatum HOM05D002803 ORTHO05D003089 3.4e-09 66.2 113 32.7
MBI16_g46922_MAGBIO Magnolia biondii HOM05D002803 ORTHO05D003089 4.4e-09 65.9 145 36.6
MSTRG.3520 Avicennia marina HOM05D008294 ORTHO05D010468 5.8e-09 65.5 135 34.1
CDE07G1489 Ceratophyllum demersum HOM05D002803 ORTHO05D001341 5.8e-09 65.5 140 31.4
Lsat_1_v5_gn_1_15881 Lactuca sativa HOM05D002803 ORTHO05D003089 5.8e-09 65.5 136 33.8
Nn3g17698 Nelumbo nucifera HOM05D002803 ORTHO05D003089 5.8e-09 65.5 126 34.9
Cc07_g08180 Coffea canephora HOM05D008294 ORTHO05D010468 7.5e-09 65.1 136 33.1
Cpa.g.sc13.62 Carica papaya HOM05D002803 ORTHO05D003089 9.8e-09 64.7 149 30.2
Hma1.2p1_0340F.1_g129940 Hydrangea macrophylla HOM05D002803 ORTHO05D003089 9.8e-09 64.7 114 31.6
MBI10_g08547_MAGBIO Magnolia biondii HOM05D002803 ORTHO05D003089 9.8e-09 64.7 97 38.1
Sabra12G0042700 Salix brachista HOM05D002803 ORTHO05D003089 1.3e-08 64.3 116 29.3
Lalb_Chr17g0346181 Lupinus albus HOM05D008294 ORTHO05D010468 1.7e-08 63.9 124 33.1
ClCG04G011300 Citrullus lanatus HOM05D002803 ORTHO05D003089 2.2e-08 63.5 150 31.3
MBI16_g33826_MAGBIO Magnolia biondii HOM05D002803 ORTHO05D003089 2.2e-08 63.5 145 35.9
Sabra17G0107200 Salix brachista HOM05D008294 ORTHO05D010468 3.7e-08 62.8 119 35.3
Sed0021519 Sechium edule HOM05D002803 ORTHO05D003089 3.7e-08 62.8 133 32.3
TAR622G0697 Trochodendron aralioides HOM05D002803 ORTHO05D003089 3.7e-08 62.8 127 35.4
ECA246G0188 Erigeron canadensis HOM05D002803 ORTHO05D003089 4.9e-08 62.4 117 29.1
Potri.012G059500 Populus trichocarpa HOM05D002803 ORTHO05D003089 4.9e-08 62.4 132 26.5
Solyc03g119810.1 Solanum lycopersicum HOM05D002803 ORTHO05D003089 4.9e-08 62.4 81 40.7
Thecc.03G027600 Theobroma cacao HOM05D002803 ORTHO05D003089 4.9e-08 62.4 133 31.6
TAR017G0001 Trochodendron aralioides HOM05D008294 ORTHO05D010468 4.9e-08 62.4 163 33.7
Ca_02534_v3 Cicer arietinum L. HOM05D002803 ORTHO05D003089 6.4e-08 62.0 89 40.4
MD14G1221200 Malus domestica HOM05D002803 ORTHO05D003089 6.4e-08 62.0 87 36.8
PGR044G1398 Punica granatum HOM05D002803 ORTHO05D003089 6.4e-08 62.0 131 32.1
QL11p004113 Quercus lobata HOM05D008294 ORTHO05D010468 6.4e-08 62.0 105 36.2
Rhsim08G0138100 Rhododendron simsii HOM05D002803 ORTHO05D003089 6.4e-08 62.0 83 36.1
Sopen03g038670 Solanum pennellii HOM05D002803 ORTHO05D003089 6.4e-08 62.0 81 40.7
TAR374G0994 Trochodendron aralioides HOM05D002803 ORTHO05D003089 6.4e-08 62.0 87 37.9
DCAR_011342 Daucus carota HOM05D002803 ORTHO05D003089 8.3e-08 61.6 85 37.6
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 8.3e-08 61.6 80 42.5
ATR0053G030 Amborella trichopoda HOM05D002803 ORTHO05D003089 1.1e-07 61.2 44 54.5
MELO3C002073.2 Cucumis melo HOM05D002803 ORTHO05D003089 1.1e-07 61.2 135 31.9
CsaV3_1G006470 Cucumis sativus L. HOM05D002803 ORTHO05D003089 1.1e-07 61.2 135 34.1
HanXRQChr12g0374281 Helianthus annuus HOM05D002803 ORTHO05D003089 1.1e-07 61.2 138 28.3
Oeu033581.1 Olea europaea HOM05D002803 ORTHO05D003089 1.1e-07 61.2 90 37.8
SEGI_33176 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 1.1e-07 61.2 143 32.9
PGSC0003DMG400004055 Solanum tuberosum HOM05D002803 ORTHO05D003089 1.1e-07 61.2 95 33.7
arahy.Tifrunner.gnm1.ann1.DV8J5Z Arachis hypogaea HOM05D002803 ORTHO05D003089 1.4e-07 60.8 138 31.9
arahy.Tifrunner.gnm1.ann1.WSMZ37 Arachis hypogaea HOM05D002803 ORTHO05D003089 1.4e-07 60.8 138 31.9
Lsat_1_v5_gn_5_24961 Lactuca sativa HOM05D002803 ORTHO05D003089 1.4e-07 60.8 92 33.7
BraA06t23611Z Brassica rapa HOM05D002803 ORTHO05D003089 1.9e-07 60.5 54 46.3
CSS0037901 Camellia sinensis var. sinensis HOM05D002803 ORTHO05D003089 1.9e-07 60.5 116 32.8
Cpa.g.sc604.2 Carica papaya HOM05D008294 ORTHO05D010468 1.9e-07 60.5 108 37.0
Ca_23137_v3 Cicer arietinum L. HOM05D002803 ORTHO05D003089 1.9e-07 60.5 89 42.7
TWI81G0460 Tripterygium wilfordii HOM05D002803 ORTHO05D003089 1.9e-07 60.5 80 35.0
Zm00001eb252480 Zea mays HOM05D002803 ORTHO05D003089 1.9e-07 60.5 84 41.7
BcaC08g43107 Brassica carinata HOM05D002803 ORTHO05D003089 2.4e-07 60.1 52 48.1
A06p04040 Brassica napus HOM05D002803 ORTHO05D003089 2.4e-07 60.1 52 48.1
C06p03790 Brassica napus HOM05D002803 ORTHO05D003089 2.4e-07 60.1 52 48.1
BolC6t35515H Brassica oleracea HOM05D002803 ORTHO05D003089 2.4e-07 60.1 52 48.1
TPR.G9796 Trifolium pratense HOM05D002803 ORTHO05D003089 2.4e-07 60.1 52 50.0
Ciclev10022495m.g Citrus clementina HOM05D002803 ORTHO05D003089 3.2e-07 59.7 88 35.2
Cc04_g07570 Coffea canephora HOM05D002803 ORTHO05D003089 3.2e-07 59.7 81 37.0
Haze_18600 Corylus avellana HOM05D002803 ORTHO05D003089 3.2e-07 59.7 88 36.4
Glyma.05G013700 Glycine max HOM05D002803 ORTHO05D003089 3.2e-07 59.7 86 38.4
Gohir.A11G007400 Gossypium hirsutum HOM05D002803 ORTHO05D003089 3.2e-07 59.7 78 35.9
Gohir.D11G006500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 3.2e-07 59.7 78 35.9
Lalb_Chr07g0178561 Lupinus albus HOM05D002803 ORTHO05D003089 3.2e-07 59.7 135 31.1
QL10p023060 Quercus lobata HOM05D002803 ORTHO05D003089 3.2e-07 59.7 97 33.0
Thecc.04G121200 Theobroma cacao HOM05D008294 ORTHO05D010468 3.2e-07 59.7 154 30.5
MD06G1210500 Malus domestica HOM05D002803 ORTHO05D003089 4.1e-07 59.3 146 31.5
Manes.01G021300 Manihot esculenta HOM05D002803 ORTHO05D003089 4.1e-07 59.3 42 57.1
Nn4g23707 Nelumbo nucifera HOM05D002803 ORTHO05D003089 4.1e-07 59.3 125 31.2
Nn4g23709 Nelumbo nucifera HOM05D002803 ORTHO05D003089 4.1e-07 59.3 125 31.2
TWI15G0724 Tripterygium wilfordii HOM05D002803 ORTHO05D003089 4.1e-07 59.3 88 31.8
VMungo1215G1130 Vigna mungo HOM05D002803 ORTHO05D003089 4.1e-07 59.3 39 59.0
AUR62023240 Chenopodium quinoa HOM05D008294 ORTHO05D010468 5.4e-07 58.9 177 30.5
Eucgr.B00693 Eucalyptus grandis HOM05D002803 ORTHO05D003089 5.4e-07 58.9 42 54.8
Nitab4.5_0007105g0020 Nicotiana tabacum HOM05D002803 ORTHO05D003089 5.4e-07 58.9 86 38.4
C08p04510 Brassica napus HOM05D002803 ORTHO05D003089 7.1e-07 58.5 122 32.8
Duzib205G0759 Durio zibethinus HOM05D002803 ORTHO05D003089 7.1e-07 58.5 128 30.5
Gorai.007G007800 Gossypium raimondii HOM05D002803 ORTHO05D003089 7.1e-07 58.5 78 34.6
HanXRQChr02g0042761 Helianthus annuus HOM05D002803 ORTHO05D003089 7.1e-07 58.5 91 34.1
Medtr4g077777 Medicago truncatula HOM05D002803 ORTHO05D003089 7.1e-07 58.5 86 32.6
Nitab4.5_0001432g0060 Nicotiana tabacum HOM05D002803 ORTHO05D003089 7.1e-07 58.5 99 33.3
Nitab4.5_0003716g0110 Nicotiana tabacum HOM05D002803 ORTHO05D003089 7.1e-07 58.5 80 38.8
Peaxi162Scf00015g00069 Petunia axillaris HOM05D002803 ORTHO05D003089 7.1e-07 58.5 81 37.0
Potri.010G130600 Populus trichocarpa HOM05D002803 ORTHO05D003089 7.1e-07 58.5 131 33.6
Solyc06g069250.2 Solanum lycopersicum HOM05D002803 ORTHO05D003089 7.1e-07 58.5 60 43.3
PGSC0003DMG400005702 Solanum tuberosum HOM05D002803 ORTHO05D003089 7.1e-07 58.5 81 38.3
AL1G55870 Arabidopsis lyrata HOM05D002803 ORTHO05D003089 9.2e-07 58.2 119 31.1
COL.COLO4_22704 Corchorus olitorius HOM05D002803 ORTHO05D003089 9.2e-07 58.2 78 37.2
FAN08G1483 Fragaria x ananassa HOM05D002803 ORTHO05D003089 9.2e-07 58.2 125 32.0
Hma1.2p1_0595F.1_g186020 Hydrangea macrophylla HOM05D002803 ORTHO05D003089 9.2e-07 58.2 59 45.8
Manes.05G118500 Manihot esculenta HOM05D002803 ORTHO05D003089 9.2e-07 58.2 86 34.9
Oeu054753.1 Olea europaea HOM05D008294 ORTHO05D010468 9.2e-07 58.2 74 40.5
Psat1g024640 Pisum sativum HOM05D002803 ORTHO05D003089 9.2e-07 58.2 88 34.1
Potri.017G128700 Populus trichocarpa HOM05D008294 ORTHO05D010468 9.2e-07 58.2 140 31.4
Dinv36899 Davidia involucrata HOM05D002803 ORTHO05D003089 1.2e-06 57.8 90 32.2
ECA236G1914 Erigeron canadensis HOM05D000101 ORTHO05D000089 1.2e-06 57.8 108 35.2
Lj4g0013411 Lotus japonicus HOM05D002803 ORTHO05D003089 1.2e-06 57.8 71 43.7
Prupe.5G216600 Prunus persica HOM05D002803 ORTHO05D003089 1.2e-06 57.8 101 33.7
PGR083G1726 Punica granatum HOM05D002803 ORTHO05D003089 1.2e-06 57.8 42 52.4
ATR0053G026 Amborella trichopoda HOM05D002803 ORTHO05D003089 1.6e-06 57.4 85 38.8
Cfa019832 Carpinus fangiana HOM05D002803 ORTHO05D003089 1.6e-06 57.4 160 30.0
CiPaw.15G125800 Carya illinoinensis HOM05D002803 ORTHO05D003089 1.6e-06 57.4 82 36.6
Glyma.04G145700 Glycine max HOM05D002803 ORTHO05D003089 1.6e-06 57.4 78 38.5
Glyma.06G210200 Glycine max HOM05D002803 ORTHO05D003089 1.6e-06 57.4 78 38.5
Gohir.A12G265300 Gossypium hirsutum HOM05D002803 ORTHO05D003089 1.6e-06 57.4 51 45.1
Gohir.D12G265500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 1.6e-06 57.4 51 45.1
Gorai.008G285200 Gossypium raimondii HOM05D002803 ORTHO05D003089 1.6e-06 57.4 51 45.1
Nitab4.5_0002366g0040 Nicotiana tabacum HOM05D008294 ORTHO05D010468 1.6e-06 57.4 112 34.8
Potri.004G088300 Populus trichocarpa HOM05D008294 ORTHO05D010468 1.6e-06 57.4 152 26.3
SMO367G0928 Selaginella moellendorffii HOM05D002803 ORTHO05D003089 1.6e-06 57.4 129 30.2
AT1G49000 Arabidopsis thaliana HOM05D002803 ORTHO05D003089 2.1e-06 57.0 125 30.4
BcaC07g37087 Brassica carinata HOM05D002803 ORTHO05D003089 2.1e-06 57.0 122 32.0
A08p04240 Brassica napus HOM05D002803 ORTHO05D003089 2.1e-06 57.0 122 32.0
BolC8t47256H Brassica oleracea HOM05D002803 ORTHO05D003089 2.1e-06 57.0 122 32.0
CANSAT80G1035 Cannabis sativa HOM05D002803 ORTHO05D003089 2.1e-06 57.0 141 28.4
CARHR039030 Cardamine hirsuta HOM05D002803 ORTHO05D003089 2.1e-06 57.0 59 45.8
Duzib084G1194 Durio zibethinus HOM05D002803 ORTHO05D003089 2.1e-06 57.0 120 29.2
FAN13G3198 Fragaria x ananassa HOM05D002803 ORTHO05D003089 2.1e-06 57.0 125 31.2
HanXRQChr02g0042791 Helianthus annuus HOM05D002803 ORTHO05D003089 2.1e-06 57.0 78 39.7
Medtr0077s0010 Medicago truncatula HOM05D002803 ORTHO05D003089 2.1e-06 57.0 78 33.3
Medtr1g067620 Medicago truncatula HOM05D002803 ORTHO05D003089 2.1e-06 57.0 46 52.2
Prupe.3G159000 Prunus persica HOM05D008294 ORTHO05D010468 2.1e-06 57.0 88 39.8
BraA08t32452Z Brassica rapa HOM05D002803 ORTHO05D003089 2.7e-06 56.6 122 32.0
Carub.0001s3818 Capsella rubella HOM05D002803 ORTHO05D003089 2.7e-06 56.6 47 48.9
FvH4_5g12760 Fragaria vesca HOM05D002803 ORTHO05D003089 2.7e-06 56.6 125 31.2
FAN18G3348 Fragaria x ananassa HOM05D002803 ORTHO05D003089 2.7e-06 56.6 125 31.2
FAN18G3648 Fragaria x ananassa HOM05D002803 ORTHO05D003089 2.7e-06 56.6 125 31.2
Lj1g0007014 Lotus japonicus HOM05D008294 ORTHO05D010468 2.7e-06 56.6 146 29.5
Medtr4g111840 Medicago truncatula HOM05D002803 ORTHO05D003089 2.7e-06 56.6 128 29.7
Os02g0711400 Oryza sativa ssp. japonica HOM05D002803 ORTHO05D003089 2.7e-06 56.6 46 54.3
Sed0002511 Sechium edule HOM05D002803 ORTHO05D003089 2.7e-06 56.6 127 33.9
THA.LOC104821849 Tarenaya hassleriana HOM05D002803 ORTHO05D003089 2.7e-06 56.6 57 45.6
Aqoxy3G03897 Aquilegia oxysepala HOM05D002803 ORTHO05D003089 3.5e-06 56.2 42 54.8
ECA238G3741 Erigeron canadensis HOM05D008294 ORTHO05D010468 3.5e-06 56.2 66 42.4
Lalb_Chr02g0151801 Lupinus albus HOM05D002803 ORTHO05D003089 3.5e-06 56.2 84 35.7
Phvul.003G177700 Phaseolus vulgaris HOM05D002803 ORTHO05D003089 3.5e-06 56.2 133 27.1
Sp1g35910 Schrenkiella parvula HOM05D002803 ORTHO05D003089 3.5e-06 56.2 52 44.2
Sed0004956 Sechium edule HOM05D002803 ORTHO05D003089 3.5e-06 56.2 131 33.6
Zm00001eb252490 Zea mays HOM05D002803 ORTHO05D003089 3.5e-06 56.2 45 55.6
BcaB04g17373 Brassica carinata HOM05D002803 ORTHO05D003089 4.6e-06 55.8 120 29.2
Thhalv10011830m.g Eutrema salsugineum HOM05D002803 ORTHO05D003089 4.6e-06 55.8 63 44.4
Sopen06g026510 Solanum pennellii HOM05D002803 ORTHO05D003089 4.6e-06 55.8 60 43.3
TWI60G0312 Tripterygium wilfordii HOM05D002803 ORTHO05D003089 4.6e-06 55.8 78 34.6
Aa31LG10G4930 Aethionema arabicum HOM05D002803 ORTHO05D003089 6.0e-06 55.5 82 36.6
EL10Ac2g04485 Beta vulgaris HOM05D008294 ORTHO05D010468 6.0e-06 55.5 160 28.1
TPR.G9792 Trifolium pratense HOM05D002803 ORTHO05D003089 6.0e-06 55.5 45 55.6
VMungo1309G1453 Vigna mungo HOM05D002803 ORTHO05D003089 6.0e-06 55.5 137 30.7
Ah.02g127220 Amaranthus hybridus HOM05D002803 ORTHO05D003089 7.8e-06 55.1 42 54.8
DCAR_015130 Daucus carota HOM05D002803 ORTHO05D003089 7.8e-06 55.1 88 31.8
DCAR_023180 Daucus carota HOM05D002803 ORTHO05D003089 7.8e-06 55.1 43 46.5
HanXRQChr16g0528841 Helianthus annuus HOM05D002803 ORTHO05D003089 7.8e-06 55.1 49 49.0
Lalb_Chr04g0251301 Lupinus albus HOM05D008294 ORTHO05D010468 7.8e-06 55.1 141 29.1
Nitab4.5_0000221g0090 Nicotiana tabacum HOM05D002803 ORTHO05D003089 7.8e-06 55.1 128 35.9
Pp3c4_18190 Physcomitrium patens HOM05D035914 ORTHO05D010468 7.8e-06 55.1 63 39.7
Psat1g210120 Pisum sativum HOM05D002803 ORTHO05D003089 7.8e-06 55.1 89 36.0


User provided reference genes

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