Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_10703 Sequoiadendron giganteum HOM05D003369 ORTHO05D004089 1.9e-179 632.5 342 100.0
SEGI_35863 Sequoiadendron giganteum HOM05D009239 ORTHO05D007837 2.7e-32 143.7 125 56.0
SEGI_35495 Sequoiadendron giganteum HOM05D009239 ORTHO05D007837 9.5e-30 135.2 140 50.7
SEGI_34916 Sequoiadendron giganteum HOM05D009239 ORTHO05D007837 2.1e-24 117.5 99 58.6
Gorai.010G219100 Gossypium raimondii HOM05D003369 ORTHO05D004089 5.1e-23 112.8 209 45.0
SalBow3G2694 Salvia bowleyana HOM05D003369 ORTHO05D004089 8.6e-23 112.1 227 41.9
CSS0036715 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 5.6e-22 109.4 210 42.4
Gohir.A06G179800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 1.2e-21 108.2 206 44.7
Lj5g0006652 Lotus japonicus HOM05D003369 ORTHO05D004089 1.2e-21 108.2 207 44.0
Gohir.D06G186800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 2.8e-21 107.1 206 46.1
SEGI_12853 Sequoiadendron giganteum HOM05D006483 ORTHO05D007837 3.6e-21 106.7 125 45.6
SEGI_25918 Sequoiadendron giganteum HOM05D009239 ORTHO05D000002 6.2e-21 105.9 102 54.9
Glyma.09G252000 Glycine max HOM05D003369 ORTHO05D004089 8.1e-21 105.5 208 43.8
Atru.chr12.204 Acer truncatum HOM05D003369 ORTHO05D004089 1.1e-20 105.1 217 36.4
Duzib114G1008 Durio zibethinus HOM05D003369 ORTHO05D004089 1.4e-20 104.8 214 36.4
Thecc.10G184000 Theobroma cacao HOM05D003369 ORTHO05D004089 1.4e-20 104.8 213 37.6
CANSAT54G1399 Cannabis sativa HOM05D003369 ORTHO05D004089 2.4e-20 104.0 210 38.6
RcHm_v2.0_Chr4g0447001 Rosa chinensis HOM05D003369 ORTHO05D004089 2.4e-20 104.0 206 43.2
VMungo1383G1217 Vigna mungo HOM05D003369 ORTHO05D004089 2.4e-20 104.0 216 43.1
TAR633G0919 Trochodendron aralioides HOM05D003369 ORTHO05D004089 3.1e-20 103.6 129 48.1
MBI15_g39391_MAGBIO Magnolia biondii HOM05D003369 ORTHO05D004089 4.0e-20 103.2 225 45.3
QL05p063633 Quercus lobata HOM05D003369 ORTHO05D004089 5.2e-20 102.8 208 44.2
ATR1127G027 Amborella trichopoda HOM05D003369 ORTHO05D004089 6.8e-20 102.4 206 35.4
CiPaw.10G110000 Carya illinoinensis HOM05D003369 ORTHO05D004089 6.8e-20 102.4 121 47.9
VMungo0720G1409 Vigna mungo HOM05D003369 ORTHO05D004089 2.0e-19 100.9 208 43.3
Ca_09969_v3 Cicer arietinum L. HOM05D003369 ORTHO05D004089 2.6e-19 100.5 213 43.2
Dinv34494 Davidia involucrata HOM05D003369 ORTHO05D004089 2.6e-19 100.5 141 44.0
Medtr6g086565 Medicago truncatula HOM05D003369 ORTHO05D004089 2.6e-19 100.5 191 45.0
Haze_05901 Corylus avellana HOM05D003369 ORTHO05D004089 3.4e-19 100.1 210 38.1
Peaxi162Scf00739g00425 Petunia axillaris HOM05D003369 ORTHO05D004089 3.4e-19 100.1 218 36.2
Phvul.010G077634 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 5.8e-19 99.4 197 46.7
TWI09G0152 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 7.6e-19 99.0 211 42.7
DCAR_005880 Daucus carota HOM05D003369 ORTHO05D020257 1.3e-18 98.2 204 44.1
PSO017G0651 Papaver somniferum HOM05D003369 ORTHO05D004089 1.3e-18 98.2 220 44.5
CDE06G0307 Ceratophyllum demersum HOM05D001225 ORTHO05D001252 1.7e-18 97.8 129 45.0
Glyma.18G240600 Glycine max HOM05D003369 ORTHO05D004089 2.2e-18 97.4 208 42.3
vmacro06898 Vaccinium macrocarpon HOM05D003369 ORTHO05D004089 2.2e-18 97.4 208 36.5
Aqoxy3G00685 Aquilegia oxysepala HOM05D003369 ORTHO05D004089 2.9e-18 97.1 208 35.6
CiPaw.09G143000 Carya illinoinensis HOM05D003369 ORTHO05D004089 2.9e-18 97.1 144 43.8
Pp3c3_22310 Physcomitrium patens HOM05D003369 ORTHO05D004089 2.9e-18 97.1 234 36.3
Manes.10G002000 Manihot esculenta HOM05D003369 ORTHO05D004089 3.8e-18 96.7 211 43.1
Nitab4.5_0000171g0170 Nicotiana tabacum HOM05D003369 ORTHO05D004089 3.8e-18 96.7 208 40.4
Actinidia13643 Actinidia chinensis HOM05D003369 ORTHO05D004089 4.9e-18 96.3 208 35.1
AUR62042224 Chenopodium quinoa HOM05D003369 ORTHO05D004089 4.9e-18 96.3 192 36.5
ECA232G1960 Erigeron canadensis HOM05D003369 ORTHO05D004089 4.9e-18 96.3 192 40.6
Glyma.20G219600 Glycine max HOM05D003369 ORTHO05D004089 4.9e-18 96.3 208 42.8
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 4.9e-18 96.3 208 34.6
TWI53G1724 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 4.9e-18 96.3 212 39.2
MD00G1126900 Malus domestica HOM05D003369 ORTHO05D004089 6.4e-18 95.9 125 45.6
EL10Ac3g06746 Beta vulgaris HOM05D003369 ORTHO05D004089 8.4e-18 95.5 199 38.2
ECA238G1180 Erigeron canadensis HOM05D003369 ORTHO05D004089 8.4e-18 95.5 218 35.3
PSO170G0385 Papaver somniferum HOM05D003369 ORTHO05D004089 8.4e-18 95.5 220 43.6
THA.LOC104814068 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 8.4e-18 95.5 226 44.2
Gohir.A05G277600 Gossypium hirsutum HOM05D003369 ORTHO05D004089 1.1e-17 95.1 214 36.9
Gohir.D05G279200 Gossypium hirsutum HOM05D003369 ORTHO05D004089 1.1e-17 95.1 214 45.8
Lalb_Chr02g0149391 Lupinus albus HOM05D003369 ORTHO05D004089 1.1e-17 95.1 180 45.6
Sed0008109 Sechium edule HOM05D003369 ORTHO05D004089 1.9e-17 94.4 206 41.3
THA.LOC104824367 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 1.9e-17 94.4 217 39.2
Ciclev10030740m.g Citrus clementina HOM05D003369 ORTHO05D004089 2.4e-17 94.0 184 46.7
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 2.4e-17 94.0 208 35.1
Gorai.009G292700 Gossypium raimondii HOM05D003369 ORTHO05D004089 5.4e-17 92.8 214 45.3
MD13G1002600 Malus domestica HOM05D003369 ORTHO05D004089 5.4e-17 92.8 210 34.8
Phvul.008G055600 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 5.4e-17 92.8 114 46.5
AL4G38590 Arabidopsis lyrata HOM05D003369 ORTHO05D004089 7.1e-17 92.4 218 37.6
AUR62037781 Chenopodium quinoa HOM05D003369 ORTHO05D004089 7.1e-17 92.4 109 50.5
DCAR_007356 Daucus carota HOM05D003369 ORTHO05D004089 7.1e-17 92.4 203 40.9
Manes.07G142600 Manihot esculenta HOM05D003369 ORTHO05D004089 7.1e-17 92.4 210 36.2
Potri.013G090500 Populus trichocarpa HOM05D003369 ORTHO05D004089 7.1e-17 92.4 221 42.1
AT2G40730 Arabidopsis thaliana HOM05D003369 ORTHO05D004089 9.2e-17 92.0 218 37.6
BcaB01g03521 Brassica carinata HOM05D003369 ORTHO05D004089 9.2e-17 92.0 219 34.7
SGA_v2.0_scaffold327G48760 Striga asiatica HOM05D003369 ORTHO05D004089 9.2e-17 92.0 214 34.1
HanXRQChr14g0460671 Helianthus annuus HOM05D003369 ORTHO05D004089 1.6e-16 91.3 214 35.5
Hund05383 Selenicereus undatus HOM05D003369 ORTHO05D004089 1.6e-16 91.3 208 35.6
Cpa.g.sc19.47 Carica papaya HOM05D003369 ORTHO05D004089 2.7e-16 90.5 188 46.3
Lj8A53T101 Lonicera japonica HOM05D003369 ORTHO05D004089 2.7e-16 90.5 192 35.4
Potri.019G059200 Populus trichocarpa HOM05D003369 ORTHO05D004089 3.5e-16 90.1 123 45.5
A03p22890 Brassica napus HOM05D003369 ORTHO05D004089 4.6e-16 89.7 193 36.3
Nn5g26838 Nelumbo nucifera HOM05D003369 ORTHO05D004089 4.6e-16 89.7 186 37.1
Eucgr.J00108 Eucalyptus grandis HOM05D003369 ORTHO05D004089 6.0e-16 89.4 189 37.0
Aa31LG3G1410 Aethionema arabicum HOM05D003369 ORTHO05D004089 7.8e-16 89.0 139 41.7
COL.COLO4_19461 Corchorus olitorius HOM05D003369 ORTHO05D004089 7.8e-16 89.0 211 35.1
Prupe.1G349800 Prunus persica HOM05D003369 ORTHO05D004089 7.8e-16 89.0 211 34.1
HanXRQChr15g0493711 Helianthus annuus HOM05D003369 ORTHO05D004089 1.0e-15 88.6 215 42.3
Psat0s4462g0240 Pisum sativum HOM05D001932 ORTHO05D004089 1.0e-15 88.6 131 42.0
Actinidia31631 Actinidia chinensis HOM05D003369 ORTHO05D004089 1.3e-15 88.2 206 33.5
arahy.Tifrunner.gnm1.ann1.ABG2GV Arachis hypogaea HOM05D003369 ORTHO05D004089 1.3e-15 88.2 208 39.9
arahy.Tifrunner.gnm1.ann1.HI4H5F Arachis hypogaea HOM05D003369 ORTHO05D004089 1.3e-15 88.2 208 39.9
Nitab4.5_0000375g0250 Nicotiana tabacum HOM05D003369 ORTHO05D004089 1.7e-15 87.8 207 38.2
Sopen06g015200 Solanum pennellii HOM05D003369 ORTHO05D004089 1.7e-15 87.8 196 43.4
PGSC0003DMG400016657 Solanum tuberosum HOM05D003369 ORTHO05D004089 1.7e-15 87.8 196 44.4
C03p27140 Brassica napus HOM05D003369 ORTHO05D004089 3.0e-15 87.0 193 36.8
CDE07G0902 Ceratophyllum demersum HOM05D003369 ORTHO05D004089 3.0e-15 87.0 210 33.3
Sp4g23040 Schrenkiella parvula HOM05D003369 ORTHO05D004089 3.0e-15 87.0 221 35.7
BraA03t11513Z Brassica rapa HOM05D003369 ORTHO05D004089 3.9e-15 86.7 193 35.2
FAN17G2799 Fragaria x ananassa HOM05D003369 ORTHO05D004089 3.9e-15 86.7 125 41.6
BcaC01g05384 Brassica carinata HOM05D003369 ORTHO05D004089 5.1e-15 86.3 193 36.8
BolC3t15095H Brassica oleracea HOM05D003369 ORTHO05D004089 5.1e-15 86.3 193 36.3
Nitab4.5_0011372g0040 Nicotiana tabacum HOM05D003369 ORTHO05D004089 5.1e-15 86.3 207 33.8
PGR044G0140 Punica granatum HOM05D003369 ORTHO05D004089 6.6e-15 85.9 207 33.8
Hma1.2p1_0264F.1_g106040 Hydrangea macrophylla HOM05D003369 ORTHO05D004089 1.9e-14 84.3 211 41.2
BcaB06g29170 Brassica carinata HOM05D003369 ORTHO05D004089 2.5e-14 84.0 218 35.3
Lsat_1_v5_gn_2_126361 Lactuca sativa HOM05D003369 ORTHO05D004089 2.5e-14 84.0 193 45.1
Lalb_Chr06g0168441 Lupinus albus HOM05D003369 ORTHO05D004089 2.5e-14 84.0 175 44.0
MSTRG.8884 Avicennia marina HOM05D003369 ORTHO05D004089 3.3e-14 83.6 110 43.6
Oeu063993.2 Olea europaea HOM05D003369 ORTHO05D004089 3.3e-14 83.6 105 45.7
Zm00001eb368920 Zea mays HOM05D003369 ORTHO05D004089 3.3e-14 83.6 182 41.2
GSVIVG01032663001 Vitis vinifera HOM05D003369 ORTHO05D004089 5.6e-14 82.8 217 41.5
Ah.13g075100 Amaranthus hybridus HOM05D003369 ORTHO05D004089 7.3e-14 82.4 141 43.3
Solyc06g048890.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 7.3e-14 82.4 194 39.7
Zm00001eb149610 Zea mays HOM05D003369 ORTHO05D004089 7.3e-14 82.4 211 41.7
Sc05g0004490 Simmondsia chinensis HOM05D003369 ORTHO05D004089 9.6e-14 82.0 212 34.0
TPR.G35277 Trifolium pratense HOM05D003369 ORTHO05D004089 2.8e-13 80.5 213 33.3
Carub.0004s2301 Capsella rubella HOM05D003369 ORTHO05D004089 6.2e-13 79.3 215 35.3
FvH4_4g37220 Fragaria vesca HOM05D003369 ORTHO05D004089 6.2e-13 79.3 125 40.8
Sabra19G0074300 Salix brachista HOM05D003369 ORTHO05D004089 6.2e-13 79.3 81 53.1
CSS0040829 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 2.4e-12 77.4 71 52.1
ClCG11G010900 Citrullus lanatus HOM05D003369 ORTHO05D004089 3.1e-12 77.0 207 30.9
Thhalv10016269m.g Eutrema salsugineum HOM05D003369 ORTHO05D004089 3.1e-12 77.0 218 33.9
unitig_0.g2517 Utricularia gibba HOM05D003369 ORTHO05D004089 3.1e-12 77.0 224 32.1
CARHR135820 Cardamine hirsuta HOM05D003369 ORTHO05D004089 5.3e-12 76.3 218 33.5
Migut.F00574 Erythranthe guttata HOM05D003369 ORTHO05D004089 1.2e-11 75.1 208 37.5
Os01g0819900 Oryza sativa ssp. japonica HOM05D003369 ORTHO05D004089 2.0e-11 74.3 212 38.7
PGSC0003DMG400011657 Solanum tuberosum HOM05D003369 ORTHO05D004089 2.6e-11 73.9 203 38.4
FAN07G2686 Fragaria x ananassa HOM05D003369 ORTHO05D004089 4.4e-11 73.2 205 38.0
Nn2g10283 Nelumbo nucifera HOM05D003369 ORTHO05D004089 5.8e-11 72.8 186 32.3
CsaV3_3G030590 Cucumis sativus L. HOM05D003369 ORTHO05D004089 7.6e-11 72.4 207 30.9
Solyc05g052200.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 1.3e-10 71.6 178 42.7
BcaC02g07330 Brassica carinata HOM05D003369 ORTHO05D004089 1.7e-10 71.2 224 33.9
C04p68490 Brassica napus HOM05D003369 ORTHO05D004089 2.2e-10 70.9 219 34.2
Lsat_1_v5_gn_8_20221 Lactuca sativa HOM05D003369 ORTHO05D004089 2.9e-10 70.5 103 44.7
BcaC02g12730 Brassica carinata HOM05D003369 ORTHO05D004089 4.9e-10 69.7 182 34.1
BolC4t28349H Brassica oleracea HOM05D003369 ORTHO05D004089 4.9e-10 69.7 219 34.2
MELO3C022652.2 Cucumis melo HOM05D003369 ORTHO05D004089 4.9e-10 69.7 209 29.7
MSTRG.27258 Avicennia marina HOM05D003369 ORTHO05D004089 8.4e-10 68.9 205 42.9
A04p31100 Brassica napus HOM05D003369 ORTHO05D004089 8.4e-10 68.9 219 33.8
BraA04t18565Z Brassica rapa HOM05D003369 ORTHO05D004089 8.4e-10 68.9 219 33.8
Oeu018743.1 Olea europaea HOM05D003369 ORTHO05D004089 1.4e-09 68.2 215 43.3
Medtr1g078370 Medicago truncatula HOM05D003369 ORTHO05D004089 1.9e-09 67.8 208 32.2
Sopen05g030740 Solanum pennellii HOM05D003369 ORTHO05D004089 1.9e-09 67.8 178 42.1
CAN.G203.55 Capsicum annuum HOM05D003369 ORTHO05D004089 2.4e-09 67.4 192 37.0
Lsat_1_v5_gn_8_135680 Lactuca sativa HOM05D003369 ORTHO05D004089 2.4e-09 67.4 103 42.7
SMO199G0006 Selaginella moellendorffii HOM05D003369 ORTHO05D004089 5.4e-09 66.2 128 35.9
Duzib106G0164 Durio zibethinus HOM05D003369 ORTHO05D004089 7.1e-09 65.9 200 32.0
Mapoly0025s0051 Marchantia polymorpha HOM05D003369 ORTHO05D004089 6.0e-08 62.8 234 30.3
Lsat_1_v5_gn_8_162600 Lactuca sativa HOM05D003369 ORTHO05D004089 7.8e-08 62.4 103 42.7
HPP92_018085 Vanilla planifolia HOM05D003369 ORTHO05D004089 1.3e-07 61.6 214 35.5
SMO361G0312 Selaginella moellendorffii HOM05D003369 ORTHO05D004089 1.7e-07 61.2 92 38.0
SEGI_17180 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 3.0e-07 60.5 102 36.3
Sc05g0004500 Simmondsia chinensis HOM05D003369 ORTHO05D004089 1.5e-06 58.2 64 50.0


User provided reference genes

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