Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 1.4e-149 533.1 302 100.0
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 3.1e-101 372.5 300 67.7
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 4.4e-95 352.1 306 61.8
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 1.7e-91 340.1 305 60.3
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.2e-91 339.7 305 60.3
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 5.0e-91 338.6 305 59.0
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 1.8e-88 330.1 303 59.7
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.8e-88 330.1 318 59.7
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 2.3e-88 329.7 302 59.3
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 3.0e-88 329.3 300 60.7
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 1.2e-87 327.4 315 58.1
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 1.5e-87 327.0 306 58.2
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 2.6e-87 326.2 307 57.7
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 3.7e-86 322.4 303 58.7
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 4.9e-86 322.0 302 57.0
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.4e-85 319.7 300 58.3
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 1.2e-84 317.4 294 61.6
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 1.2e-84 317.4 289 60.2
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 5.9e-84 315.1 310 55.8
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 2.3e-83 313.2 298 59.1
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 3.8e-83 312.4 303 58.1
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 8.6e-83 311.2 310 55.8
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 8.6e-83 311.2 303 58.1
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 1.1e-82 310.8 302 57.9
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 1.1e-82 310.8 308 56.2
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.5e-82 310.5 271 62.7
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 1.5e-82 310.5 288 59.0
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 1.9e-82 310.1 313 55.0
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.9e-82 310.1 301 58.5
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 1.9e-82 310.1 287 57.5
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 2.5e-82 309.7 302 57.3
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.5e-82 309.7 305 58.0
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 4.2e-82 308.9 307 55.4
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 9.5e-82 307.8 306 55.2
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 2.8e-81 306.2 304 56.6
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 3.6e-81 305.8 300 56.3
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 3.6e-81 305.8 302 57.0
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 6.1e-81 305.1 302 54.6
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 1.0e-80 304.3 308 55.5
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 3.0e-80 302.8 278 59.0
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 5.2e-80 302.0 301 55.8
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 1.2e-79 300.8 278 59.7
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 5.7e-79 298.5 304 54.9
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 9.8e-79 297.7 317 54.6
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 3.7e-78 295.8 306 55.6
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 4.9e-78 295.4 300 54.3
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 6.4e-78 295.0 308 54.5
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 8.3e-78 294.7 306 57.2
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 1.8e-77 293.5 301 56.1
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 1.8e-77 293.5 292 56.2
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 2.4e-77 293.1 275 58.5
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 5.4e-77 292.0 296 57.4
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 7.0e-77 291.6 306 53.9
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.3e-75 287.3 305 55.4
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 1.7e-75 287.0 305 55.4
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 1.5e-74 283.9 303 53.5
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 4.3e-74 282.3 248 59.3
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 9.5e-74 281.2 278 57.6
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 9.5e-74 281.2 281 56.6
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 1.2e-73 280.8 308 52.6
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 3.1e-72 276.2 301 52.2
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 2.6e-71 273.1 302 55.3
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.7e-70 270.4 200 66.5
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 3.7e-70 269.2 342 48.2
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.3e-67 260.8 301 53.8
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 5.0e-67 258.8 310 50.0
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 1.1e-66 257.7 224 60.3
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 5.6e-66 255.4 299 51.5
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 5.6e-66 255.4 299 51.5
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.6e-65 253.8 285 55.4
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 3.6e-65 252.7 306 47.7
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 3.6e-65 252.7 299 48.5
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 6.8e-64 248.4 302 49.3
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 8.9e-64 248.1 307 52.4
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.0e-63 246.9 189 64.6
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 2.6e-63 246.5 300 53.0
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 3.4e-63 246.1 215 59.1
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 5.8e-63 245.4 273 53.8
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 1.3e-62 244.2 294 55.1
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 1.7e-62 243.8 296 54.7
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 2.9e-62 243.0 327 45.9
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 6.4e-62 241.9 301 53.2
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 2.4e-61 240.0 299 51.8
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 2.4e-61 240.0 299 51.8
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 2.4e-61 240.0 299 51.8
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.4e-61 240.0 305 52.8
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 4.1e-61 239.2 316 46.8
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 4.1e-61 239.2 302 52.6
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 9.2e-61 238.0 294 51.4
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 9.2e-61 238.0 301 51.8
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.2e-60 237.7 303 52.1
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 6.0e-60 235.3 334 50.9
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 1.0e-59 234.6 300 54.0
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 1.7e-59 233.8 311 49.8
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 2.3e-59 233.4 311 52.1
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 3.0e-59 233.0 313 49.5
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 1.9e-58 230.3 309 46.9
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.9e-58 230.3 308 51.9
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 1.2e-57 227.6 265 49.1
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 1.4e-56 224.2 307 52.1
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 1.4e-56 224.2 307 52.1
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 5.8e-55 218.8 313 46.6
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 6.4e-54 215.3 311 50.2
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 1.3e-51 207.6 297 44.8
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 2.3e-51 206.8 299 47.5
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.3e-51 206.8 189 60.3
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 3.1e-48 196.4 289 47.4
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 7.6e-47 191.8 298 41.6
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 2.2e-46 190.3 148 64.2
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 3.2e-45 186.4 290 40.7
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 3.3e-42 176.4 264 40.5
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 5.6e-42 175.6 219 47.5
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.6e-41 172.9 107 76.6
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.4e-37 161.0 105 71.4
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.3e-33 147.9 197 47.7
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 3.6e-33 146.4 206 43.7
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.4e-29 134.4 79 77.2
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 6.7e-27 125.6 182 43.4
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 3.8e-22 109.8 57 87.7
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 2.1e-20 104.0 118 53.4
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 2.7e-20 103.6 152 46.7
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 2.5e-18 97.1 131 51.9
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 7.4e-18 95.5 90 53.3
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.1e-16 91.7 48 89.6
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 1.4e-16 91.3 87 52.9
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 1.4e-16 91.3 87 52.9
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 3.1e-16 90.1 108 47.2
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 3.4e-15 86.7 112 51.8
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 6.1e-12 75.9 95 56.8
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 3.9e-11 73.2 54 63.0
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 4.8e-09 66.2 59 59.3
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 1.5e-07 61.2 55 54.5
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 2.6e-07 60.5 29 89.7
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 7.7e-07 58.9 84 33.3
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 7.7e-07 58.9 99 33.3
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 7.7e-07 58.9 70 47.1
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 7.7e-07 58.9 54 64.8
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 1.7e-06 57.8 94 39.4
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.7e-06 57.8 72 45.8
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 2.2e-06 57.4 56 51.8
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 2.2e-06 57.4 58 51.7
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 2.2e-06 57.4 50 54.0
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 2.2e-06 57.4 50 54.0
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 2.2e-06 57.4 81 35.8
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 2.9e-06 57.0 56 51.8
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 3.8e-06 56.6 76 43.4
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 3.8e-06 56.6 59 50.8
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 5.0e-06 56.2 138 34.1
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 5.0e-06 56.2 42 59.5
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 5.0e-06 56.2 45 55.6
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 5.0e-06 56.2 127 29.9
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 5.0e-06 56.2 42 59.5
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 5.0e-06 56.2 54 53.7
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 5.0e-06 56.2 58 48.3
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 6.5e-06 55.8 53 50.9
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 6.5e-06 55.8 51 52.9
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 6.5e-06 55.8 50 56.0
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 6.5e-06 55.8 57 49.1
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 6.5e-06 55.8 57 49.1
QL03p062784 Quercus lobata HOM05D002899 ORTHO05D003850 6.5e-06 55.8 60 50.0
QL03p066723 Quercus lobata HOM05D002899 ORTHO05D003850 6.5e-06 55.8 60 50.0
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 8.5e-06 55.5 67 41.8
Dinv04696 Davidia involucrata HOM05D002899 ORTHO05D003850 8.5e-06 55.5 97 38.1
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 8.5e-06 55.5 57 49.1
Lju926C12T4 Lonicera japonica HOM05D002899 ORTHO05D003850 8.5e-06 55.5 102 37.3
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 8.5e-06 55.5 72 45.8
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 8.5e-06 55.5 54 50.0
Rhsim03G0225400 Rhododendron simsii HOM05D002899 ORTHO05D003850 8.5e-06 55.5 42 59.5


User provided reference genes

Program Settings