Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_10439 Sequoiadendron giganteum HOM05D025800 ORTHO05D002741 3.4e-124 448.4 227 100.0
SEGI_11517 Sequoiadendron giganteum HOM05D002645 ORTHO05D002741 6.5e-43 178.3 124 73.4
SEGI_31692 Sequoiadendron giganteum HOM05D002645 ORTHO05D002741 6.5e-35 151.8 127 66.1
SEGI_16788 Sequoiadendron giganteum HOM05D025800 ORTHO05D002741 1.9e-34 150.2 98 76.5
SEGI_35936 Sequoiadendron giganteum HOM05D025800 ORTHO05D002741 1.9e-34 150.2 98 76.5
HanXRQChr05g0155321 Helianthus annuus HOM05D002645 ORTHO05D002741 8.6e-11 71.6 120 39.2
DCAR_016457 Daucus carota HOM05D002645 ORTHO05D002741 1.1e-10 71.2 92 41.3
Nn3g16713 Nelumbo nucifera HOM05D002645 ORTHO05D002741 3.3e-10 69.7 72 50.0
TAR374G0680 Trochodendron aralioides HOM05D002645 ORTHO05D002741 4.3e-10 69.3 73 47.9
Lsat_1_v5_gn_5_14161 Lactuca sativa HOM05D002645 ORTHO05D002741 9.5e-10 68.2 111 40.5
ATR0824G127 Amborella trichopoda HOM05D002645 ORTHO05D002741 1.2e-09 67.8 97 41.2
arahy.Tifrunner.gnm1.ann1.QD9R4Y Arachis hypogaea HOM05D002645 ORTHO05D002741 1.6e-09 67.4 73 53.4
Cpa.g.sc27.218 Carica papaya HOM05D002645 ORTHO05D002741 1.6e-09 67.4 74 48.6
CSS0012457 Camellia sinensis var. sinensis HOM05D002645 ORTHO05D002741 2.1e-09 67.0 116 33.6
CSS0023137 Camellia sinensis var. sinensis HOM05D002645 ORTHO05D002741 2.1e-09 67.0 116 33.6
CDE10G0794 Ceratophyllum demersum HOM05D002645 ORTHO05D002741 2.1e-09 67.0 106 40.6
HPP92_015786 Vanilla planifolia HOM05D002645 ORTHO05D002741 2.1e-09 67.0 96 41.7
CAN.G338.23 Capsicum annuum HOM05D002645 ORTHO05D002741 3.6e-09 66.2 69 47.8
CDE10G1277 Ceratophyllum demersum HOM05D002645 ORTHO05D002741 3.6e-09 66.2 75 49.3
ClCG01G021190 Citrullus lanatus HOM05D002645 ORTHO05D002741 4.7e-09 65.9 88 42.0
Duzib192G0266 Durio zibethinus HOM05D002645 ORTHO05D002741 4.7e-09 65.9 95 45.3
ECA246G4176 Erigeron canadensis HOM05D002645 ORTHO05D002741 4.7e-09 65.9 111 39.6
Haze_07573 Corylus avellana HOM05D002645 ORTHO05D002741 6.2e-09 65.5 87 46.0
Nn1g07770 Nelumbo nucifera HOM05D002645 ORTHO05D002741 6.2e-09 65.5 75 44.0
Nitab4.5_0003703g0030 Nicotiana tabacum HOM05D002645 ORTHO05D002741 6.2e-09 65.5 69 46.4
CAN.G993.22 Capsicum annuum HOM05D002645 ORTHO05D002741 8.0e-09 65.1 87 42.5
Potri.015G083100 Populus trichocarpa HOM05D002645 ORTHO05D002741 8.0e-09 65.1 70 48.6
Ah.02g110670 Amaranthus hybridus HOM05D000032 ORTHO05D002561 1.0e-08 64.7 72 50.0
Nitab4.5_0001793g0110 Nicotiana tabacum HOM05D002645 ORTHO05D002741 1.0e-08 64.7 69 46.4
Sed0017809 Sechium edule HOM05D002645 ORTHO05D002741 1.0e-08 64.7 69 50.7
Atru.chr9.2561 Acer truncatum HOM05D002645 ORTHO05D002741 1.4e-08 64.3 69 49.3
Aqoxy3G01205 Aquilegia oxysepala HOM05D002645 ORTHO05D002741 1.4e-08 64.3 79 41.8
MELO3C008004.2 Cucumis melo HOM05D002645 ORTHO05D002741 1.4e-08 64.3 88 39.8
CsaV3_6G048200 Cucumis sativus L. HOM05D002645 ORTHO05D002741 1.4e-08 64.3 88 42.0
Sabra12G0060900 Salix brachista HOM05D002645 ORTHO05D002741 1.4e-08 64.3 93 41.9
MSTRG.11489 Avicennia marina HOM05D002645 ORTHO05D002741 1.8e-08 63.9 67 47.8
ClCG06G001960 Citrullus lanatus HOM05D002645 ORTHO05D002741 1.8e-08 63.9 82 43.9
Glyma.07G268800 Glycine max HOM05D002645 ORTHO05D002741 1.8e-08 63.9 74 45.9
Gohir.A06G203701 Gossypium hirsutum HOM05D002645 ORTHO05D002741 1.8e-08 63.9 82 43.9
RcHm_v2.0_Chr7g0192691 Rosa chinensis HOM05D002645 ORTHO05D002741 2.3e-08 63.5 69 44.9
Sopen06g028030 Solanum pennellii HOM05D002645 ORTHO05D002741 2.3e-08 63.5 87 43.7
Dinv07155 Davidia involucrata HOM05D002645 ORTHO05D002741 3.1e-08 63.2 78 42.3
Peaxi162Scf00089g01428 Petunia axillaris HOM05D002645 ORTHO05D002741 3.1e-08 63.2 69 46.4
Solyc03g112330.3 Solanum lycopersicum HOM05D002645 ORTHO05D002741 3.1e-08 63.2 69 44.9
Sopen03g031430 Solanum pennellii HOM05D002645 ORTHO05D002741 3.1e-08 63.2 69 44.9
PGSC0003DMG400018183 Solanum tuberosum HOM05D002645 ORTHO05D002741 3.1e-08 63.2 69 44.9
PGSC0003DMG400026986 Solanum tuberosum HOM05D002645 ORTHO05D002741 3.1e-08 63.2 87 43.7
Atru.chr1.2243 Acer truncatum HOM05D002645 ORTHO05D002741 4.0e-08 62.8 69 47.8
CsaV3_6G008020 Cucumis sativus L. HOM05D002645 ORTHO05D002741 4.0e-08 62.8 82 43.9
Gohir.D06G218100 Gossypium hirsutum HOM05D002645 ORTHO05D002741 4.0e-08 62.8 133 32.3
Thecc.06G241800 Theobroma cacao HOM05D002645 ORTHO05D002741 4.0e-08 62.8 69 49.3
Gorai.010G248200 Gossypium raimondii HOM05D002645 ORTHO05D002741 5.2e-08 62.4 82 41.5
Oeu027444.1 Olea europaea HOM05D002645 ORTHO05D002741 5.2e-08 62.4 83 42.2
Phvul.003G088000 Phaseolus vulgaris HOM05D002645 ORTHO05D002741 5.2e-08 62.4 82 45.1
Potri.012G084700 Populus trichocarpa HOM05D002645 ORTHO05D002741 5.2e-08 62.4 86 44.2
QL10p007255 Quercus lobata HOM05D002645 ORTHO05D002741 5.2e-08 62.4 73 45.2
MELO3C026262.2 Cucumis melo HOM05D002645 ORTHO05D002741 6.8e-08 62.0 82 43.9
CsaV3_1G001130 Cucumis sativus L. HOM05D002645 ORTHO05D002741 6.8e-08 62.0 82 43.9
FAN08G0747 Fragaria x ananassa HOM05D002645 ORTHO05D002741 6.8e-08 62.0 109 36.7
MD05G1362400 Malus domestica HOM05D002645 ORTHO05D002741 6.8e-08 62.0 85 44.7
Manes.14G061300 Manihot esculenta HOM05D002645 ORTHO05D002741 6.8e-08 62.0 69 46.4
Sabra15G0106600 Salix brachista HOM05D000032 ORTHO05D002741 6.8e-08 62.0 69 47.8
TAR517G0005 Trochodendron aralioides HOM05D002645 ORTHO05D002741 6.8e-08 62.0 84 39.3
arahy.Tifrunner.gnm1.ann1.28F7LT Arachis hypogaea HOM05D002645 ORTHO05D002741 8.9e-08 61.6 67 53.7
PGR004G1691 Punica granatum HOM05D002645 ORTHO05D002741 8.9e-08 61.6 92 42.4
Actinidia02281 Actinidia chinensis HOM05D002645 ORTHO05D002741 1.2e-07 61.2 76 47.4
CANSAT80G0636 Cannabis sativa HOM05D002645 ORTHO05D002741 1.2e-07 61.2 83 39.8
FAN04G0990 Fragaria x ananassa HOM05D002645 ORTHO05D002741 1.2e-07 61.2 69 46.4
FvH4_5g06120 Fragaria vesca HOM05D002645 ORTHO05D002741 1.5e-07 60.8 109 35.8
Lj5A129T72 Lonicera japonica HOM05D002645 ORTHO05D002741 1.5e-07 60.8 80 40.0
SalBow5G2166 Salvia bowleyana HOM05D002645 ORTHO05D002741 1.5e-07 60.8 98 40.8
SalBow5G4247 Salvia bowleyana HOM05D002645 ORTHO05D002741 1.5e-07 60.8 98 40.8
SGA_v2.0_scaffold90G27851 Striga asiatica HOM05D001863 ORTHO05D001962 1.5e-07 60.8 82 43.9
Actinidia14194 Actinidia chinensis HOM05D002645 ORTHO05D002741 2.6e-07 60.1 73 47.9
Cpa.g.sc110.4 Carica papaya HOM05D002645 ORTHO05D002741 2.6e-07 60.1 85 45.9
Cfa019206 Carpinus fangiana HOM05D002645 ORTHO05D002741 2.6e-07 60.1 89 42.7
Glyma.05G041100 Glycine max HOM05D002645 ORTHO05D002741 2.6e-07 60.1 84 44.0
CSS0025007 Camellia sinensis var. sinensis HOM05D002645 ORTHO05D002741 4.4e-07 59.3 73 39.7
Haze_07000 Corylus avellana HOM05D002645 ORTHO05D002741 4.4e-07 59.3 74 43.2
SEGI_14114 Sequoiadendron giganteum HOM05D000163 ORTHO05D000962 4.4e-07 59.3 82 41.5
SEGI_17291 Sequoiadendron giganteum HOM05D002645 ORTHO05D002741 4.4e-07 59.3 99 40.4
SEGI_34228 Sequoiadendron giganteum HOM05D000163 ORTHO05D000962 4.4e-07 59.3 105 34.3
Cfa000025 Carpinus fangiana HOM05D002645 ORTHO05D002741 5.8e-07 58.9 76 39.5
Ca_20987_v3 Cicer arietinum L. HOM05D002645 ORTHO05D002741 5.8e-07 58.9 111 36.9
Hma1.2p1_1175F.1_g264120 Hydrangea macrophylla HOM05D002645 ORTHO05D002741 5.8e-07 58.9 69 46.4
Prupe.5G166500 Prunus persica HOM05D002645 ORTHO05D002741 5.8e-07 58.9 77 41.6
Sed0027781 Sechium edule HOM05D002645 ORTHO05D002741 5.8e-07 58.9 86 39.5
CiPaw.09G109600 Carya illinoinensis HOM05D002645 ORTHO05D002741 7.5e-07 58.5 69 46.4
vmacro03600 Vaccinium macrocarpon HOM05D002645 ORTHO05D002741 7.5e-07 58.5 71 45.1
Glyma.17G085200 Glycine max HOM05D002645 ORTHO05D002741 9.8e-07 58.2 85 42.4
Lj4g0000891 Lotus japonicus HOM05D002645 ORTHO05D002741 9.8e-07 58.2 77 45.5
MBI15_g31884_MAGBIO Magnolia biondii HOM05D002645 ORTHO05D002741 9.8e-07 58.2 92 39.1
CiPaw.11G021400 Carya illinoinensis HOM05D002645 ORTHO05D002741 1.3e-06 57.8 67 46.3
Duzib068G1337 Durio zibethinus HOM05D002645 ORTHO05D002741 1.3e-06 57.8 71 40.8
FAN13G2482 Fragaria x ananassa HOM05D002645 ORTHO05D002741 1.3e-06 57.8 109 33.9
Lj4g0025839 Lotus japonicus HOM05D002645 ORTHO05D002741 1.3e-06 57.8 86 43.0
Lalb_Chr20g0119581 Lupinus albus HOM05D002645 ORTHO05D002741 1.3e-06 57.8 77 46.8
TAR622G0286 Trochodendron aralioides HOM05D002645 ORTHO05D002741 1.3e-06 57.8 77 39.0
Peaxi162Scf00827g00412 Petunia axillaris HOM05D002645 ORTHO05D002741 1.7e-06 57.4 79 44.3
Phvul.003G087900 Phaseolus vulgaris HOM05D002645 ORTHO05D002741 1.7e-06 57.4 77 45.5
PGR042G0736 Punica granatum HOM05D002645 ORTHO05D002741 1.7e-06 57.4 78 42.3
PGR044G1459 Punica granatum HOM05D002645 ORTHO05D002741 1.7e-06 57.4 80 42.5
CANSAT56G4022 Cannabis sativa HOM05D002645 ORTHO05D002741 2.9e-06 56.6 71 42.3
Lj6g0025630 Lotus japonicus HOM05D002645 ORTHO05D002741 2.9e-06 56.6 108 33.3
VMungo1215G2500 Vigna mungo HOM05D002645 ORTHO05D002741 2.9e-06 56.6 98 34.7
CiPaw.10G082900 Carya illinoinensis HOM05D002645 ORTHO05D002741 3.7e-06 56.2 71 43.7
Ciclev10021791m.g Citrus clementina HOM05D002645 ORTHO05D002741 3.7e-06 56.2 69 43.5
Psat0s473g0040 Pisum sativum HOM05D002645 ORTHO05D002741 3.7e-06 56.2 70 47.1
VMungo1215G2924 Vigna mungo HOM05D002645 ORTHO05D002741 3.7e-06 56.2 94 38.3
Ciclev10016013m.g Citrus clementina HOM05D002645 ORTHO05D002741 4.9e-06 55.8 74 39.2
Cc04_g11710 Coffea canephora HOM05D002645 ORTHO05D002741 4.9e-06 55.8 82 36.6
Manes.09G084200 Manihot esculenta HOM05D002645 ORTHO05D002741 4.9e-06 55.8 88 43.2
COL.COLO4_05567 Corchorus olitorius HOM05D002645 ORTHO05D002741 6.4e-06 55.5 69 37.7
DCAR_028370 Daucus carota HOM05D002645 ORTHO05D002741 6.4e-06 55.5 78 43.6
Lj6g0007328 Lotus japonicus HOM05D002645 ORTHO05D002741 6.4e-06 55.5 88 40.9
MBI15_g36663_MAGBIO Magnolia biondii HOM05D002645 ORTHO05D002741 6.4e-06 55.5 74 44.6
Nitab4.5_0000025g0300 Nicotiana tabacum HOM05D002645 ORTHO05D002741 6.4e-06 55.5 67 41.8
GSVIVG01002204001 Vitis vinifera HOM05D002645 ORTHO05D002741 6.4e-06 55.5 72 40.3
Nitab4.5_0001683g0040 Nicotiana tabacum HOM05D002645 ORTHO05D002741 8.3e-06 55.1 84 39.3
Psat0s3230g0040 Pisum sativum HOM05D002645 ORTHO05D002741 8.3e-06 55.1 75 44.0
PGR042G2084 Punica granatum HOM05D002645 ORTHO05D002741 8.3e-06 55.1 78 41.0
Rhsim11G0055900 Rhododendron simsii HOM05D002645 ORTHO05D002741 8.3e-06 55.1 79 36.7
SEGI_25440 Sequoiadendron giganteum HOM05D000163 ORTHO05D000962 8.3e-06 55.1 100 36.0
TWI63G0163 Tripterygium wilfordii HOM05D002645 ORTHO05D002741 8.3e-06 55.1 70 44.3
GSVIVG01007663001 Vitis vinifera HOM05D002645 ORTHO05D002741 8.3e-06 55.1 67 44.8


User provided reference genes

Program Settings