Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_10425 Sequoiadendron giganteum HOM05D014122 ORTHO05D015848 8.3e-241 836.6 427 100.0
SEGI_10455 Sequoiadendron giganteum HOM05D014122 ORTHO05D015848 4.4e-133 478.8 342 69.9
AagrBONN_evm.TU.Sc2ySwM_344.1892 Anthoceros agrestis HOM05D014122 ORTHO05D015848 2.1e-79 300.4 306 50.7
AagrBONN_evm.TU.Sc2ySwM_344.1890 Anthoceros agrestis HOM05D014122 ORTHO05D015848 5.3e-78 295.8 279 53.0
Pp3c9_3490 Physcomitrium patens HOM05D014122 ORTHO05D015848 2.2e-76 290.4 327 48.0
Pp3c2_3950 Physcomitrium patens HOM05D014122 ORTHO05D015848 9.3e-75 285.0 324 48.5
Pp3c27_5320 Physcomitrium patens HOM05D014122 ORTHO05D015848 2.1e-74 283.9 323 47.4
Mapoly0085s0084 Marchantia polymorpha HOM05D014122 ORTHO05D015848 1.3e-73 281.2 271 52.4
Mapoly0095s0059 Marchantia polymorpha HOM05D014122 ORTHO05D015848 4.0e-62 243.0 266 47.4
Mapoly0138s0015 Marchantia polymorpha HOM05D014122 ORTHO05D015848 1.3e-60 238.0 329 41.0
Pp3c15_11100 Physcomitrium patens HOM05D014122 ORTHO05D015848 3.3e-56 223.4 319 43.3
Zm00001eb111920 Zea mays HOM05D000860 ORTHO05D003230 2.6e-08 64.3 191 28.3
Eucgr.A00626 Eucalyptus grandis HOM05D000860 ORTHO05D003230 7.5e-08 62.8 188 29.3
RcHm_v2.0_Chr5g0071801 Rosa chinensis HOM05D000860 ORTHO05D003230 7.5e-08 62.8 218 26.6
Cc01_g14910 Coffea canephora HOM05D000127 ORTHO05D003230 1.7e-07 61.6 242 24.8
Aa31LG1G23330 Aethionema arabicum HOM05D000860 ORTHO05D003230 2.2e-07 61.2 239 27.2
ECA248G0775 Erigeron canadensis HOM05D000860 ORTHO05D003230 2.2e-07 61.2 192 29.2
Potri.006G105100 Populus trichocarpa HOM05D000860 ORTHO05D003230 2.2e-07 61.2 200 27.0
Cfa011786 Carpinus fangiana HOM05D000860 ORTHO05D003230 2.9e-07 60.8 218 26.1
Lj6g0019825 Lotus japonicus HOM05D000860 ORTHO05D003230 2.9e-07 60.8 240 26.7
Gohir.A08G203500 Gossypium hirsutum HOM05D000860 ORTHO05D003230 3.7e-07 60.5 217 27.2
Lj1P125T29 Lonicera japonica HOM05D000860 ORTHO05D003230 3.7e-07 60.5 196 26.5
CAN.G1034.32 Capsicum annuum HOM05D000860 ORTHO05D003230 4.9e-07 60.1 171 29.8
Gorai.012G119400 Gossypium raimondii HOM05D000860 ORTHO05D003230 4.9e-07 60.1 230 24.8
Lsat_1_v5_gn_9_14620 Lactuca sativa HOM05D000860 ORTHO05D003230 4.9e-07 60.1 175 30.3
PGSC0003DMG400011624 Solanum tuberosum HOM05D000860 ORTHO05D003230 4.9e-07 60.1 171 28.7
CDE06G0504 Ceratophyllum demersum HOM05D000860 ORTHO05D003230 6.3e-07 59.7 229 27.1
Haze_24422 Corylus avellana HOM05D000860 ORTHO05D003230 6.3e-07 59.7 218 26.1
Peaxi162Scf00744g00024 Petunia axillaris HOM05D000860 ORTHO05D003230 6.3e-07 59.7 170 28.2
Actinidia20772 Actinidia chinensis HOM05D000860 ORTHO05D003230 8.3e-07 59.3 196 29.1
Gohir.D04G135600 Gossypium hirsutum HOM05D000860 ORTHO05D003230 8.3e-07 59.3 230 24.8
QL07p033824 Quercus lobata HOM05D000860 ORTHO05D003230 8.3e-07 59.3 227 24.7
Rhsim05G0226400 Rhododendron simsii HOM05D000860 ORTHO05D003230 8.3e-07 59.3 194 27.8
Sabra06G0081800 Salix brachista HOM05D000860 ORTHO05D003230 8.3e-07 59.3 200 26.5
Sc21g0005000 Simmondsia chinensis HOM05D000860 ORTHO05D003230 8.3e-07 59.3 226 27.0
Thecc.05G005900 Theobroma cacao HOM05D000860 ORTHO05D003230 8.3e-07 59.3 229 24.9
Dinv12180 Davidia involucrata HOM05D000860 ORTHO05D003230 1.1e-06 58.9 193 26.4
FAN14G0660 Fragaria x ananassa HOM05D000860 ORTHO05D003230 1.1e-06 58.9 267 25.8
Glyma.11G163400 Glycine max HOM05D000860 ORTHO05D003230 1.1e-06 58.9 221 26.2
Lsat_1_v5_gn_5_149681 Lactuca sativa HOM05D000860 ORTHO05D003230 1.1e-06 58.9 204 27.5
ClCG04G006630 Citrullus lanatus HOM05D000860 ORTHO05D003230 1.4e-06 58.5 231 26.4
FAN02G3288 Fragaria x ananassa HOM05D000860 ORTHO05D003230 1.4e-06 58.5 227 26.4
PSO339G4857 Papaver somniferum HOM05D000860 ORTHO05D003230 1.4e-06 58.5 248 25.0
PSO384G2948 Papaver somniferum HOM05D000860 ORTHO05D003230 1.4e-06 58.5 248 25.0
Carub.0006s0013 Capsella rubella HOM05D000860 ORTHO05D003230 1.8e-06 58.2 254 25.6
CsaV3_3G033320 Cucumis sativus L. HOM05D000860 ORTHO05D003230 1.8e-06 58.2 197 28.9
Manes.09G112500 Manihot esculenta HOM05D000860 ORTHO05D003230 1.8e-06 58.2 200 27.5
Sed0023108 Sechium edule HOM05D000860 ORTHO05D003230 1.8e-06 58.2 199 29.1
AUR62026337 Chenopodium quinoa HOM05D000860 ORTHO05D003230 2.4e-06 57.8 177 30.5
Lsat_1_v5_gn_9_36341 Lactuca sativa HOM05D000860 ORTHO05D003230 2.4e-06 57.8 188 28.7
SEGI_27848 Sequoiadendron giganteum HOM05D000860 ORTHO05D003230 2.4e-06 57.8 223 26.9
SGA_v2.0_scaffold75G25037 Striga asiatica HOM05D000860 ORTHO05D003230 2.4e-06 57.8 169 32.0
Ah.08g215370 Amaranthus hybridus HOM05D000860 ORTHO05D003230 3.2e-06 57.4 213 25.8
ClCG10G022520 Citrullus lanatus HOM05D000860 ORTHO05D003230 3.2e-06 57.4 195 30.3
FvH4_3g39840 Fragaria vesca HOM05D000860 ORTHO05D003230 3.2e-06 57.4 200 26.5
FvH4_6g10540 Fragaria vesca HOM05D000860 ORTHO05D003230 3.2e-06 57.4 227 26.4
Hma1.2p1_0501F.1_g167300 Hydrangea macrophylla HOM05D000860 ORTHO05D003230 3.2e-06 57.4 173 28.3
MBI15_g01649_MAGBIO Magnolia biondii HOM05D000860 ORTHO05D003230 3.2e-06 57.4 198 27.8
Phvul.006G074500 Phaseolus vulgaris HOM05D000860 ORTHO05D003230 3.2e-06 57.4 196 28.1
Ah.15g090430 Amaranthus hybridus HOM05D000860 ORTHO05D003230 4.1e-06 57.0 170 30.0
MELO3C009125.2 Cucumis melo HOM05D000860 ORTHO05D003230 4.1e-06 57.0 195 30.3
Solyc09g015040.1 Solanum lycopersicum HOM05D000860 ORTHO05D003230 4.1e-06 57.0 171 28.1
Aqoxy1G01269 Aquilegia oxysepala HOM05D000860 ORTHO05D003230 5.4e-06 56.6 214 26.6
Psat7g249520 Pisum sativum HOM05D000860 ORTHO05D003230 5.4e-06 56.6 181 26.5
RcHm_v2.0_Chr3g0461501 Rosa chinensis HOM05D000860 ORTHO05D003230 5.4e-06 56.6 183 29.0
Sabra16G0130300 Salix brachista HOM05D000860 ORTHO05D003230 5.4e-06 56.6 191 27.7
VMungo0540G0584 Vigna mungo HOM05D000860 ORTHO05D003230 5.4e-06 56.6 194 27.3
GSVIVG01024625001 Vitis vinifera HOM05D000127 ORTHO05D003230 5.4e-06 56.6 223 25.6
AagrBONN_evm.TU.Sc2ySwM_228.3756 Anthoceros agrestis HOM05D000860 ORTHO05D003230 7.0e-06 56.2 163 28.8
C03p00280 Brassica napus HOM05D000860 ORTHO05D003230 7.0e-06 56.2 218 26.1
Cpa.g.sc5.246 Carica papaya HOM05D000860 ORTHO05D003230 7.0e-06 56.2 184 27.2
Cc00_g13870 Coffea canephora HOM05D000860 ORTHO05D003230 7.0e-06 56.2 170 27.6
COL.COLO4_14442 Corchorus olitorius HOM05D000860 ORTHO05D003230 7.0e-06 56.2 220 25.0
PGR031G3676 Punica granatum HOM05D000860 ORTHO05D003230 7.0e-06 56.2 196 26.0
Ah.08g210010 Amaranthus hybridus HOM05D000860 ORTHO05D003230 9.2e-06 55.8 171 29.2
AT5G01710 Arabidopsis thaliana HOM05D000860 ORTHO05D003230 9.2e-06 55.8 200 28.0
CANSAT54G1862 Cannabis sativa HOM05D000860 ORTHO05D003230 9.2e-06 55.8 200 26.5
Migut.D00843 Erythranthe guttata HOM05D000860 ORTHO05D003230 9.2e-06 55.8 193 26.9
FAN11G3204 Fragaria x ananassa HOM05D000860 ORTHO05D003230 9.2e-06 55.8 194 27.3
FAN16G1489 Fragaria x ananassa HOM05D000860 ORTHO05D003230 9.2e-06 55.8 194 27.3
Lalb_Chr20g0114681 Lupinus albus HOM05D000860 ORTHO05D003230 9.2e-06 55.8 196 28.6
Medtr3g031200 Medicago truncatula HOM05D000860 ORTHO05D003230 9.2e-06 55.8 190 28.4
unitig_699.g19374 Utricularia gibba HOM05D000860 ORTHO05D003230 9.2e-06 55.8 174 27.6


User provided reference genes

Program Settings