Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 2.0e-106 389.0 186 100.0
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 4.7e-39 165.2 99 77.8
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 2.3e-38 162.9 99 76.8
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 5.2e-38 161.8 99 75.8
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 5.2e-38 161.8 99 74.7
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 8.8e-38 161.0 99 75.8
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 8.8e-38 161.0 99 73.7
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 1.2e-37 160.6 99 75.8
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 1.2e-37 160.6 97 76.3
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 1.5e-37 160.2 110 68.2
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.0e-37 159.8 99 74.7
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 2.0e-37 159.8 99 76.8
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 3.3e-37 159.1 99 76.8
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 3.3e-37 159.1 99 75.8
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 5.7e-37 158.3 94 77.7
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 7.5e-37 157.9 99 75.8
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 7.5e-37 157.9 99 75.8
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 7.5e-37 157.9 99 73.7
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 7.5e-37 157.9 99 73.7
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 7.5e-37 157.9 99 73.7
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 7.5e-37 157.9 99 75.8
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 7.5e-37 157.9 94 74.5
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 9.7e-37 157.5 94 77.7
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 1.7e-36 156.8 99 73.7
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 1.7e-36 156.8 99 73.7
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 1.7e-36 156.8 99 73.7
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 1.7e-36 156.8 99 73.7
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 1.7e-36 156.8 99 73.7
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 1.7e-36 156.8 99 73.7
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.7e-36 156.8 99 73.7
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 1.7e-36 156.8 99 73.7
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 2.2e-36 156.4 97 75.3
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 2.2e-36 156.4 99 72.7
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 2.8e-36 156.0 97 75.3
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 3.7e-36 155.6 97 77.3
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 3.7e-36 155.6 99 72.7
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 3.7e-36 155.6 99 72.7
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 3.7e-36 155.6 94 76.6
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 3.7e-36 155.6 97 74.2
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 3.7e-36 155.6 99 72.7
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 3.7e-36 155.6 99 74.7
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 4.8e-36 155.2 99 73.7
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 4.8e-36 155.2 97 75.3
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 4.8e-36 155.2 94 75.5
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 4.8e-36 155.2 99 72.7
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 4.8e-36 155.2 99 73.7
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 4.8e-36 155.2 99 73.7
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 4.8e-36 155.2 99 71.7
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 4.8e-36 155.2 99 71.7
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 6.3e-36 154.8 94 75.5
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 6.3e-36 154.8 100 72.0
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 8.3e-36 154.5 94 75.5
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 8.3e-36 154.5 94 75.5
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 8.3e-36 154.5 94 75.5
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 8.3e-36 154.5 94 71.3
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 8.3e-36 154.5 94 71.3
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 8.3e-36 154.5 92 73.9
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.1e-35 154.1 99 72.7
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 1.4e-35 153.7 99 70.7
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 1.8e-35 153.3 94 74.5
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.8e-35 153.3 99 73.7
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 2.4e-35 152.9 97 72.2
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 2.4e-35 152.9 99 72.7
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 3.1e-35 152.5 94 74.5
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 4.1e-35 152.1 94 74.5
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 5.3e-35 151.8 99 72.7
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 9.1e-35 151.0 92 72.8
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 9.1e-35 151.0 94 72.3
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 1.2e-34 150.6 97 72.2
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 1.2e-34 150.6 99 71.7
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 1.6e-34 150.2 97 72.2
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 2.0e-34 149.8 99 69.7
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 2.7e-34 149.4 92 73.9
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 4.5e-34 148.7 97 72.2
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 5.9e-34 148.3 99 69.7
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 7.7e-34 147.9 94 72.3
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.7e-33 146.7 99 68.7
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 3.8e-33 145.6 97 69.1
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 3.8e-33 145.6 112 63.4
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 1.1e-32 144.1 93 69.9
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 1.1e-32 144.1 91 71.4
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 1.9e-32 143.3 99 69.7
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 3.2e-32 142.5 94 69.1
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 7.2e-32 141.4 99 67.7
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 1.2e-31 140.6 99 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 2.7e-31 139.4 105 59.0
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 2.3e-30 136.3 105 58.1
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 4.0e-30 135.6 84 73.8
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 4.0e-30 135.6 94 64.9
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 5.2e-30 135.2 85 71.8
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 1.2e-29 134.0 106 57.5
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.5e-29 133.7 105 57.1
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 2.0e-29 133.3 81 72.8
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.6e-29 132.9 99 63.6
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 3.4e-29 132.5 110 54.5
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 4.4e-29 132.1 99 64.6
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.7e-28 130.2 94 64.9
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 1.7e-28 130.2 94 64.9
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 2.2e-28 129.8 99 63.6
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 3.1e-27 125.9 103 52.4
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 4.1e-27 125.6 99 63.6
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 2.5e-24 116.3 178 39.9
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 4.2e-24 115.5 66 75.8
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 1.6e-23 113.6 99 57.6
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 2.0e-21 106.7 62 75.8
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 1.6e-18 97.1 69 68.1
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 4.5e-18 95.5 139 36.7
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 1.1e-16 90.9 76 59.2
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 3.6e-15 85.9 75 57.3
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.8e-14 83.6 61 67.2
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 2.2e-12 76.6 123 40.7
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 1.4e-11 73.9 103 41.7
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 9.2e-11 71.2 67 49.3
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 1.7e-09 67.0 75 50.7
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.7e-09 67.0 45 68.9
SEGI_11826 Sequoiadendron giganteum HOM05D003114 ORTHO05D003519 1.1e-06 57.8 36 75.0
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 6.8e-06 55.1 36 72.2


User provided reference genes

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