Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09922 Sequoiadendron giganteum HOM05D001206 ORTHO05D025115 1.4e-77 292.7 138 100.0
ATR0584G074 Amborella trichopoda HOM05D001206 ORTHO05D002068 2.6e-10 69.3 68 51.5
Cfa002167 Carpinus fangiana HOM05D001206 ORTHO05D002068 1.7e-09 66.6 88 43.2
Manes.13G079500 Manihot esculenta HOM05D001206 ORTHO05D002068 2.2e-09 66.2 68 44.1
TAR381G0025 Trochodendron aralioides HOM05D001206 ORTHO05D002068 2.2e-09 66.2 62 50.0
PSO170G4632 Papaver somniferum HOM05D001206 ORTHO05D002068 4.9e-09 65.1 61 52.5
Gohir.A05G382400 Gossypium hirsutum HOM05D001206 ORTHO05D002068 6.4e-09 64.7 68 47.1
Gohir.D04G032800 Gossypium hirsutum HOM05D001206 ORTHO05D002068 6.4e-09 64.7 68 47.1
Gorai.012G037200 Gossypium raimondii HOM05D001206 ORTHO05D002068 6.4e-09 64.7 68 47.1
MSTRG.2774 Avicennia marina HOM05D001206 ORTHO05D002068 8.3e-09 64.3 70 42.9
Sc09g0002170 Simmondsia chinensis HOM05D001206 ORTHO05D002068 8.3e-09 64.3 68 41.2
Nn1g08806 Nelumbo nucifera HOM05D001206 ORTHO05D002068 1.4e-08 63.5 59 50.8
arahy.Tifrunner.gnm1.ann1.KRA1N7 Arachis hypogaea HOM05D001206 ORTHO05D002068 1.9e-08 63.2 70 40.0
arahy.Tifrunner.gnm1.ann1.NWD6TW Arachis hypogaea HOM05D001206 ORTHO05D002068 1.9e-08 63.2 70 40.0
Duzib147G0233 Durio zibethinus HOM05D001206 ORTHO05D002068 2.4e-08 62.8 68 45.6
CSS0017124 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D002068 3.2e-08 62.4 68 44.1
CiPaw.03G115500 Carya illinoinensis HOM05D001206 ORTHO05D002068 3.2e-08 62.4 59 50.8
CiPaw.04G077300 Carya illinoinensis HOM05D001206 ORTHO05D002068 3.2e-08 62.4 90 38.9
Os11g0170000 Oryza sativa ssp. japonica HOM05D001206 ORTHO05D002068 3.2e-08 62.4 93 41.9
Glyma.05G195500 Glycine max HOM05D001206 ORTHO05D002068 4.1e-08 62.0 68 39.7
Potri.007G098600 Populus trichocarpa HOM05D001206 ORTHO05D002068 4.1e-08 62.0 68 44.1
QL10p040090 Quercus lobata HOM05D001206 ORTHO05D002068 4.1e-08 62.0 68 44.1
PSO528G0179 Papaver somniferum HOM05D001206 ORTHO05D002068 5.4e-08 61.6 61 49.2
HPP92_027806 Vanilla planifolia HOM05D001206 ORTHO05D002068 5.4e-08 61.6 62 45.2
GSVIVG01022368001 Vitis vinifera HOM05D001206 ORTHO05D002068 5.4e-08 61.6 64 40.6
Dinv40958 Davidia involucrata HOM05D001206 ORTHO05D002068 7.1e-08 61.2 68 42.6
Gohir.A11G058000 Gossypium hirsutum HOM05D001206 ORTHO05D002068 7.1e-08 61.2 68 44.1
Gohir.D11G062200 Gossypium hirsutum HOM05D001206 ORTHO05D002068 7.1e-08 61.2 68 44.1
Gorai.007G067000 Gossypium raimondii HOM05D001206 ORTHO05D002068 7.1e-08 61.2 68 44.1
HanXRQChr15g0469251 Helianthus annuus HOM05D001206 ORTHO05D025115 7.1e-08 61.2 72 43.1
Glyma.04G207800 Glycine max HOM05D001206 ORTHO05D002068 9.2e-08 60.8 63 44.4
Cc00_g12090 Coffea canephora HOM05D001206 ORTHO05D002068 1.2e-07 60.5 68 41.2
Peaxi162Scf00310g00521 Petunia axillaris HOM05D001206 ORTHO05D002068 1.2e-07 60.5 62 43.5
Prupe.4G282000 Prunus persica HOM05D001206 ORTHO05D002068 1.2e-07 60.5 59 42.4
Rhsim08G0002000 Rhododendron simsii HOM05D001206 ORTHO05D002068 1.2e-07 60.5 68 44.1
MELO3C008949.2 Cucumis melo HOM05D001206 ORTHO05D002068 1.6e-07 60.1 63 41.3
Os12g0169000 Oryza sativa ssp. japonica HOM05D001206 ORTHO05D002068 1.6e-07 60.1 93 41.9
Sed0026081 Sechium edule HOM05D001206 ORTHO05D002068 1.6e-07 60.1 70 37.1
VMungo0251G0194 Vigna mungo HOM05D001206 ORTHO05D002068 1.6e-07 60.1 62 43.5
Glyma.06G158000 Glycine max HOM05D001206 ORTHO05D002068 2.1e-07 59.7 63 42.9
Hma1.2p1_2302F.1_g319310 Hydrangea macrophylla HOM05D001206 ORTHO05D002068 2.1e-07 59.7 61 45.9
Zm00001eb407860 Zea mays HOM05D001206 ORTHO05D002068 2.1e-07 59.7 68 44.1
Phvul.009G152300 Phaseolus vulgaris HOM05D001206 ORTHO05D002068 2.7e-07 59.3 62 43.5
Thecc.01G141900 Theobroma cacao HOM05D001206 ORTHO05D002068 2.7e-07 59.3 68 42.6
TWI75G0035 Tripterygium wilfordii HOM05D001206 ORTHO05D002068 2.7e-07 59.3 62 41.9
Ca_17610_v3 Cicer arietinum L. HOM05D001206 ORTHO05D002068 3.5e-07 58.9 68 39.7
Glyma.08G003100 Glycine max HOM05D001206 ORTHO05D002068 3.5e-07 58.9 68 39.7
Lsat_1_v5_gn_5_69021 Lactuca sativa HOM05D001206 ORTHO05D002068 3.5e-07 58.9 68 45.6
Phvul.002G275700 Phaseolus vulgaris HOM05D001206 ORTHO05D002068 3.5e-07 58.9 68 38.2
Potri.005G070300 Populus trichocarpa HOM05D001206 ORTHO05D002068 3.5e-07 58.9 68 42.6
VMungo1309G1884 Vigna mungo HOM05D001206 ORTHO05D002068 3.5e-07 58.9 61 44.3
Atru.chr4.1112 Acer truncatum HOM05D001206 ORTHO05D002068 4.6e-07 58.5 68 41.2
TPR.G37395 Trifolium pratense HOM05D001206 ORTHO05D002068 4.6e-07 58.5 59 45.8
vmacro18673 Vaccinium macrocarpon HOM05D001206 ORTHO05D002068 4.6e-07 58.5 68 42.6
CANSAT01G2722 Cannabis sativa HOM05D001206 ORTHO05D002068 6.0e-07 58.2 59 44.1
Lalb_Chr11g0068731 Lupinus albus HOM05D001206 ORTHO05D002068 6.0e-07 58.2 68 39.7
PGR119G1042 Punica granatum HOM05D001206 ORTHO05D002068 6.0e-07 58.2 68 41.2
Ca_17001_v3 Cicer arietinum L. HOM05D001206 ORTHO05D002068 7.8e-07 57.8 61 44.3
Gohir.D10G107300 Gossypium hirsutum HOM05D001206 ORTHO05D002068 7.8e-07 57.8 68 44.1
Gorai.011G117700 Gossypium raimondii HOM05D001206 ORTHO05D002068 7.8e-07 57.8 68 44.1
Lj2C608G9 Lonicera japonica HOM05D001206 ORTHO05D002068 7.8e-07 57.8 62 41.9
AUR62006904 Chenopodium quinoa HOM05D001206 ORTHO05D002068 1.0e-06 57.4 59 44.1
DCAR_009614 Daucus carota HOM05D001206 ORTHO05D002068 1.0e-06 57.4 91 35.2
DCAR_019960 Daucus carota HOM05D001206 ORTHO05D002068 1.0e-06 57.4 59 44.1
Migut.H00836 Erythranthe guttata HOM05D001206 ORTHO05D002068 1.0e-06 57.4 68 38.2
Lj4g0025003 Lotus japonicus HOM05D001206 ORTHO05D002068 1.0e-06 57.4 59 45.8
Duzib187G1023 Durio zibethinus HOM05D001206 ORTHO05D002068 1.3e-06 57.0 63 46.0
ECA233G4817 Erigeron canadensis HOM05D001206 ORTHO05D002068 1.3e-06 57.0 68 41.2
Gohir.A10G067900 Gossypium hirsutum HOM05D001206 ORTHO05D002068 1.3e-06 57.0 68 44.1
Zm00001eb091740 Zea mays HOM05D001206 ORTHO05D002068 1.3e-06 57.0 62 37.1
Lalb_Chr12g0202941 Lupinus albus HOM05D001206 ORTHO05D002068 1.7e-06 56.6 68 39.7
Medtr8g094740 Medicago truncatula HOM05D001206 ORTHO05D002068 1.7e-06 56.6 59 44.1
Psat5g059040 Pisum sativum HOM05D001206 ORTHO05D002068 2.3e-06 56.2 61 39.3
Actinidia16517 Actinidia chinensis HOM05D001206 ORTHO05D002068 3.0e-06 55.8 68 41.2
MD15G1139000 Malus domestica HOM05D001206 ORTHO05D002068 3.0e-06 55.8 59 42.4
AUR62000552 Chenopodium quinoa HOM05D001206 ORTHO05D002068 3.9e-06 55.5 59 42.4
COL.COLO4_12112 Corchorus olitorius HOM05D001206 ORTHO05D002068 3.9e-06 55.5 68 39.7
ECA248G2477 Erigeron canadensis HOM05D001206 ORTHO05D002068 3.9e-06 55.5 68 36.8
Hund07212 Selenicereus undatus HOM05D001206 ORTHO05D002068 5.1e-06 55.1 68 39.7
TPR.G35165 Trifolium pratense HOM05D001206 ORTHO05D002068 5.1e-06 55.1 61 41.0
Medtr3g096980 Medicago truncatula HOM05D001206 ORTHO05D002068 6.6e-06 54.7 61 42.6
Ciclev10002998m.g Citrus clementina HOM05D001206 ORTHO05D025115 8.6e-06 54.3 72 38.9
FvH4_1g25540 Fragaria vesca HOM05D001206 ORTHO05D002068 8.6e-06 54.3 59 42.4
FAN19G1240 Fragaria x ananassa HOM05D001206 ORTHO05D002068 8.6e-06 54.3 59 42.4
FAN23G0439 Fragaria x ananassa HOM05D001206 ORTHO05D002068 8.6e-06 54.3 59 42.4
FAN26G1265 Fragaria x ananassa HOM05D001206 ORTHO05D002068 8.6e-06 54.3 59 42.4
FAN28G1033 Fragaria x ananassa HOM05D001206 ORTHO05D002068 8.6e-06 54.3 59 42.4
TWI79G0285 Tripterygium wilfordii HOM05D001206 ORTHO05D002068 8.6e-06 54.3 68 38.2


User provided reference genes

Program Settings