Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09904 Sequoiadendron giganteum HOM05D003989 ORTHO05D004626 1.5e-80 302.8 149 100.0
Hma1.2p1_0576F.1_g182030 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 4.4e-56 221.5 145 69.7
Hma1.2p1_0273F.1_g109620 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 7.5e-56 220.7 145 69.0
Nn1g02783 Nelumbo nucifera HOM05D003989 ORTHO05D004626 2.2e-55 219.2 143 69.2
FvH4_2g21360 Fragaria vesca HOM05D003989 ORTHO05D004626 3.7e-55 218.4 145 67.6
FAN15G1221 Fragaria x ananassa HOM05D003989 ORTHO05D004626 3.7e-55 218.4 145 67.6
FAN20G0664 Fragaria x ananassa HOM05D003989 ORTHO05D004626 3.7e-55 218.4 145 67.6
FAN27G0191 Fragaria x ananassa HOM05D003989 ORTHO05D004626 3.7e-55 218.4 145 67.6
Sed0015900 Sechium edule HOM05D003989 ORTHO05D004626 6.4e-55 217.6 145 69.7
Prupe.8G222700 Prunus persica HOM05D003989 ORTHO05D004626 8.3e-55 217.2 145 65.5
RcHm_v2.0_Chr6g0287951 Rosa chinensis HOM05D003989 ORTHO05D004626 1.4e-54 216.5 145 66.2
Thecc.01G257400 Theobroma cacao HOM05D003989 ORTHO05D004626 1.4e-54 216.5 145 67.6
MD10G1183600 Malus domestica HOM05D003989 ORTHO05D004626 3.2e-54 215.3 145 65.5
CiPaw.03G265100 Carya illinoinensis HOM05D003989 ORTHO05D004626 9.2e-54 213.8 148 68.2
FAN24G0489 Fragaria x ananassa HOM05D003989 ORTHO05D004626 2.7e-53 212.2 150 65.3
Dinv22401 Davidia involucrata HOM05D003989 ORTHO05D004626 3.5e-53 211.8 145 67.6
Sc05g0000580 Simmondsia chinensis HOM05D003989 ORTHO05D004626 6.0e-53 211.1 145 64.8
Manes.12G032900 Manihot esculenta HOM05D003989 ORTHO05D004626 7.8e-53 210.7 145 66.2
Lj1A67G39 Lonicera japonica HOM05D003989 ORTHO05D004626 1.3e-52 209.9 145 66.9
vmacro02667 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 1.7e-52 209.5 145 66.9
Actinidia07300 Actinidia chinensis HOM05D003989 ORTHO05D004626 2.3e-52 209.1 145 66.2
Actinidia30162 Actinidia chinensis HOM05D003989 ORTHO05D004626 2.3e-52 209.1 147 63.9
MD05G1196300 Malus domestica HOM05D003989 ORTHO05D004626 3.0e-52 208.8 145 64.1
Rhsim01G0262900 Rhododendron simsii HOM05D003989 ORTHO05D004626 8.6e-52 207.2 145 65.5
Haze_24640 Corylus avellana HOM05D003989 ORTHO05D004626 1.1e-51 206.8 143 64.3
CSS0015513 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 1.9e-51 206.1 142 65.5
Cpa.g.sc50.14 Carica papaya HOM05D003989 ORTHO05D004626 1.9e-51 206.1 145 66.9
CsaV3_7G027030 Cucumis sativus L. HOM05D003989 ORTHO05D004626 1.9e-51 206.1 145 65.5
arahy.Tifrunner.gnm1.ann1.CXB6W4 Arachis hypogaea HOM05D003989 ORTHO05D004626 3.3e-51 205.3 143 66.4
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 4.3e-51 204.9 145 65.5
Gohir.A07G148900 Gossypium hirsutum HOM05D003989 ORTHO05D004626 9.5e-51 203.8 144 61.8
Gorai.001G177700 Gossypium raimondii HOM05D003989 ORTHO05D004626 9.5e-51 203.8 144 61.8
Gohir.D07G155200 Gossypium hirsutum HOM05D003989 ORTHO05D004626 1.6e-50 203.0 145 61.4
Lj5g0003366 Lotus japonicus HOM05D003989 ORTHO05D004626 1.6e-50 203.0 145 66.2
Lalb_Chr06g0170491 Lupinus albus HOM05D003989 ORTHO05D004626 2.1e-50 202.6 145 66.2
Oeu063312.1 Olea europaea HOM05D003989 ORTHO05D004626 2.8e-50 202.2 145 64.8
MELO3C012749.2 Cucumis melo HOM05D003989 ORTHO05D004626 3.6e-50 201.8 151 62.9
Duzib211G0528 Durio zibethinus HOM05D003989 ORTHO05D004626 3.6e-50 201.8 145 63.4
PSO210G1270 Papaver somniferum HOM05D003989 ORTHO05D004626 3.6e-50 201.8 145 64.1
PSO832G2594 Papaver somniferum HOM05D003989 ORTHO05D004626 3.6e-50 201.8 145 64.1
Potri.002G037900 Populus trichocarpa HOM05D003989 ORTHO05D004626 3.6e-50 201.8 145 63.4
CANSAT01G0960 Cannabis sativa HOM05D003989 ORTHO05D004626 4.7e-50 201.4 145 63.4
DCAR_012550 Daucus carota HOM05D003989 ORTHO05D004626 6.2e-50 201.1 145 64.8
Hund02930 Selenicereus undatus HOM05D003989 ORTHO05D004626 6.2e-50 201.1 145 62.1
Atru.chr5.1704 Acer truncatum HOM05D003989 ORTHO05D004626 8.0e-50 200.7 145 62.8
Nitab4.5_0000470g0010 Nicotiana tabacum HOM05D003989 ORTHO05D004626 1.1e-49 200.3 145 60.7
Sabra05G0173700 Salix brachista HOM05D003989 ORTHO05D004626 1.8e-49 199.5 145 64.1
PGSC0003DMG400010319 Solanum tuberosum HOM05D003989 ORTHO05D004626 3.1e-49 198.7 143 62.9
EL10As5g23494 Beta vulgaris HOM05D003989 ORTHO05D004626 4.0e-49 198.4 145 61.4
Cfa002434 Carpinus fangiana HOM05D003989 ORTHO05D004626 8.9e-49 197.2 143 62.9
Potri.005G225100 Populus trichocarpa HOM05D003989 ORTHO05D004626 1.2e-48 196.8 145 63.4
Glyma.12G060500 Glycine max HOM05D003989 ORTHO05D004626 2.0e-48 196.1 145 64.1
Nitab4.5_0005001g0020 Nicotiana tabacum HOM05D003989 ORTHO05D004626 2.0e-48 196.1 136 61.8
Solyc09g025250.4 Solanum lycopersicum HOM05D003989 ORTHO05D004626 2.0e-48 196.1 145 61.4
Sopen09g028270 Solanum pennellii HOM05D003989 ORTHO05D004626 2.0e-48 196.1 145 61.4
CSS0015006 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 2.6e-48 195.7 145 62.1
Gorai.001G254000 Gossypium raimondii HOM05D003989 ORTHO05D004626 3.4e-48 195.3 145 60.7
CDE04G0538 Ceratophyllum demersum HOM05D001473 ORTHO05D003900 4.4e-48 194.9 145 62.1
HanXRQChr04g0115141 Helianthus annuus HOM05D003989 ORTHO05D004626 4.4e-48 194.9 145 59.3
Lalb_Chr21g0313881 Lupinus albus HOM05D003989 ORTHO05D004626 5.8e-48 194.5 145 63.4
MBI10_g23171_MAGBIO Magnolia biondii HOM05D003989 ORTHO05D004626 7.5e-48 194.1 146 59.6
Hund09614 Selenicereus undatus HOM05D003989 ORTHO05D004626 9.8e-48 193.7 145 61.4
Ciclev10022360m.g Citrus clementina HOM05D003989 ORTHO05D004626 2.9e-47 192.2 145 60.0
Aqoxy5G00222 Aquilegia oxysepala HOM05D003989 ORTHO05D004626 6.4e-47 191.0 146 60.3
GSVIVG01028345001 Vitis vinifera HOM05D003989 ORTHO05D004626 6.4e-47 191.0 184 53.3
COL.COLO4_03876 Corchorus olitorius HOM05D003989 ORTHO05D004626 8.3e-47 190.7 145 60.0
Phvul.007G192500 Phaseolus vulgaris HOM05D003989 ORTHO05D004626 1.1e-46 190.3 145 62.1
Os04g0102600 Oryza sativa ssp. japonica HOM05D003989 ORTHO05D004626 1.9e-46 189.5 146 59.6
ECA236G3729 Erigeron canadensis HOM05D003989 ORTHO05D004626 4.1e-46 188.3 145 58.6
CAN.G1147.6 Capsicum annuum HOM05D003989 ORTHO05D004626 5.4e-46 188.0 153 56.9
Sabra02G0030600 Salix brachista HOM05D003989 ORTHO05D004626 7.0e-46 187.6 168 55.4
CDE04G0232 Ceratophyllum demersum HOM05D003989 ORTHO05D004626 2.0e-45 186.0 145 59.3
TAR636G0965 Trochodendron aralioides HOM05D003989 ORTHO05D004626 2.0e-45 186.0 141 61.7
TWI75G1341 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 3.5e-45 185.3 145 57.2
DCAR_018490 Daucus carota HOM05D003989 ORTHO05D004626 7.8e-45 184.1 139 56.1
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.3e-44 183.3 145 58.6
TAR362G1008 Trochodendron aralioides HOM05D003989 ORTHO05D004626 1.3e-44 183.3 127 64.6
PGR044G1132 Punica granatum HOM05D003989 ORTHO05D004626 2.3e-44 182.6 146 59.6
vmacro14818 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 3.0e-44 182.2 127 66.9
HPP92_008957 Vanilla planifolia HOM05D003989 ORTHO05D004626 3.0e-44 182.2 145 56.6
TAR633G0447 Trochodendron aralioides HOM05D003989 ORTHO05D004626 3.9e-44 181.8 122 67.2
ATR0736G179 Amborella trichopoda HOM05D003989 ORTHO05D004626 6.6e-44 181.0 146 59.6
Ca_09678_v3 Cicer arietinum L. HOM05D003989 ORTHO05D004626 5.6e-43 177.9 146 53.4
THA.LOC104815848 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 5.6e-43 177.9 145 56.6
Glyma.13G123800 Glycine max HOM05D003989 ORTHO05D004626 7.3e-43 177.6 145 60.7
Rhsim13G0035500 Rhododendron simsii HOM05D003989 ORTHO05D004626 7.3e-43 177.6 122 67.2
ClCG09G008040 Citrullus lanatus HOM05D003989 ORTHO05D004626 2.1e-42 176.0 194 48.5
Medtr1g069900 Medicago truncatula HOM05D003989 ORTHO05D004626 2.8e-42 175.6 146 54.8
BraA03t11012Z Brassica rapa HOM05D003989 ORTHO05D004626 4.7e-42 174.9 145 53.8
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 4.7e-42 174.9 145 55.9
BcaC01g05976 Brassica carinata HOM05D003989 ORTHO05D004626 8.1e-42 174.1 145 53.1
C03p20540 Brassica napus HOM05D003989 ORTHO05D004626 8.1e-42 174.1 145 53.1
BolC3t14434H Brassica oleracea HOM05D003989 ORTHO05D004626 8.1e-42 174.1 145 53.1
AUR62024686 Chenopodium quinoa HOM05D003989 ORTHO05D004626 8.1e-42 174.1 122 64.8
Thhalv10017243m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 8.1e-42 174.1 145 53.1
Zm00001eb089650 Zea mays HOM05D003989 ORTHO05D004626 1.1e-41 173.7 146 57.5
TWI12G0613 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 1.4e-41 173.3 145 53.8
Migut.N02208 Erythranthe guttata HOM05D003989 ORTHO05D004626 1.8e-41 172.9 143 58.0
Peaxi162Scf01280g00015 Petunia axillaris HOM05D003989 ORTHO05D004626 2.3e-41 172.6 121 62.8
THA.LOC104800868 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 2.3e-41 172.6 148 56.1
TPR.G23970 Trifolium pratense HOM05D003989 ORTHO05D004626 4.0e-41 171.8 146 52.7
BcaB01g04061 Brassica carinata HOM05D003989 ORTHO05D004626 6.8e-41 171.0 145 51.7
Migut.D00429 Erythranthe guttata HOM05D003989 ORTHO05D004626 1.2e-40 170.2 145 54.5
Sp4g13620 Schrenkiella parvula HOM05D003989 ORTHO05D004626 1.5e-40 169.9 145 51.0
SGA_v2.0_scaffold2G00880 Striga asiatica HOM05D003989 ORTHO05D004626 1.5e-40 169.9 143 58.0
CiPaw.04G187100 Carya illinoinensis HOM05D003989 ORTHO05D004626 2.6e-40 169.1 145 55.9
MSTRG.17493 Avicennia marina HOM05D003989 ORTHO05D004626 3.4e-40 168.7 145 57.9
Eucgr.K03258 Eucalyptus grandis HOM05D003989 ORTHO05D004626 5.8e-40 167.9 145 53.8
QL09p039095 Quercus lobata HOM05D003989 ORTHO05D004626 7.5e-40 167.5 244 38.9
AL4G26330 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 9.9e-40 167.2 145 51.7
Psat6g041800 Pisum sativum HOM05D003989 ORTHO05D004626 1.3e-39 166.8 139 54.0
ATR0736G119 Amborella trichopoda HOM05D003989 ORTHO05D004626 2.2e-39 166.0 140 52.9
AT2G31140 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 2.2e-39 166.0 145 51.0
BcaB02g06815 Brassica carinata HOM05D003989 ORTHO05D004626 2.2e-39 166.0 139 54.0
C05p04520 Brassica napus HOM05D003989 ORTHO05D004626 2.2e-39 166.0 139 53.2
BraA10t42752Z Brassica rapa HOM05D003989 ORTHO05D004626 2.2e-39 166.0 139 53.2
CARHR124740 Cardamine hirsuta HOM05D003989 ORTHO05D004626 6.4e-39 164.5 145 52.4
Cc01_g18270 Coffea canephora HOM05D003989 ORTHO05D004626 6.4e-39 164.5 145 54.5
Zm00001eb418960 Zea mays HOM05D003989 ORTHO05D004626 6.4e-39 164.5 147 57.8
Carub.0004s1243 Capsella rubella HOM05D003989 ORTHO05D004626 1.4e-38 163.3 145 51.0
SMO238G0041 Selaginella moellendorffii HOM05D003989 ORTHO05D004626 1.9e-38 162.9 139 51.8
Thhalv10008791m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 3.2e-38 162.2 145 50.3
Lj2A1151T33 Lonicera japonica HOM05D003989 ORTHO05D004626 4.1e-38 161.8 122 60.7
Pp3c12_14220 Physcomitrium patens HOM05D003989 ORTHO05D004626 4.1e-38 161.8 144 52.1
Pp3c3_23160 Physcomitrium patens HOM05D003989 ORTHO05D004626 5.4e-38 161.4 143 51.0
AL1G16180 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 2.7e-37 159.1 145 50.3
Carub.0001s0556 Capsella rubella HOM05D003989 ORTHO05D004626 2.7e-37 159.1 146 50.7
BraA08t35517Z Brassica rapa HOM05D003989 ORTHO05D004626 3.5e-37 158.7 139 53.2
AT1G06200 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 4.6e-37 158.3 145 49.7
MSTRG.18323 Avicennia marina HOM05D003989 ORTHO05D004626 6.0e-37 157.9 136 55.9
BolC5t29223H Brassica oleracea HOM05D003989 ORTHO05D004626 7.8e-37 157.5 152 48.7
CARHR005730 Cardamine hirsuta HOM05D003989 ORTHO05D004626 7.8e-37 157.5 145 49.0
Sp1g05010 Schrenkiella parvula HOM05D003989 ORTHO05D004626 6.6e-36 154.5 145 49.0
Medtr1g069870 Medicago truncatula HOM05D003989 ORTHO05D004626 1.1e-35 153.7 146 50.0
BcaB03g13432 Brassica carinata HOM05D003989 ORTHO05D004626 2.5e-35 152.5 140 52.9
Gohir.A07G213400 Gossypium hirsutum HOM05D003989 ORTHO05D004626 2.5e-35 152.5 145 51.7
Gohir.D07G219600 Gossypium hirsutum HOM05D003989 ORTHO05D004626 2.5e-35 152.5 145 51.7
A08p36100 Brassica napus HOM05D003989 ORTHO05D004626 1.8e-33 146.4 147 48.3
AagrBONN_evm.TU.Sc2ySwM_228.3815 Anthoceros agrestis HOM05D003989 ORTHO05D004626 3.1e-33 145.6 147 47.6
C08p02410 Brassica napus HOM05D003989 ORTHO05D004626 5.2e-33 144.8 147 46.9
BcaC05g24296 Brassica carinata HOM05D003989 ORTHO05D004626 2.0e-32 142.9 121 53.7
AUR62011843 Chenopodium quinoa HOM05D003989 ORTHO05D004626 2.0e-32 142.9 145 49.0
SalBow6G3340 Salvia bowleyana HOM05D003989 ORTHO05D004626 2.6e-32 142.5 141 49.6
Aa31LG5G5780 Aethionema arabicum HOM05D003989 ORTHO05D004626 2.4e-30 136.0 124 49.2
Mapoly0108s0055 Marchantia polymorpha HOM05D003989 ORTHO05D004626 6.0e-29 131.3 139 45.3
CBR_g23031 Chara braunii HOM05D003989 ORTHO05D004626 3.0e-28 129.0 148 43.9
unitig_22.g5457 Utricularia gibba HOM05D003989 ORTHO05D004626 6.6e-28 127.9 145 45.5
Lsat_1_v5_gn_8_92701 Lactuca sativa HOM05D003989 ORTHO05D004626 8.7e-28 127.5 86 68.6
unitig_60.g25751 Utricularia gibba HOM05D003989 ORTHO05D004626 1.1e-27 127.1 145 46.2
COL.COLO4_04036 Corchorus olitorius HOM05D003989 ORTHO05D004626 7.3e-27 124.4 122 50.0
Ah.13g072470 Amaranthus hybridus HOM05D003989 ORTHO05D004626 5.2e-25 118.2 118 50.8
EL10Ac3g04998 Beta vulgaris HOM05D003989 ORTHO05D004626 2.6e-24 115.9 142 44.4
Hund03044 Selenicereus undatus HOM05D003989 ORTHO05D004626 6.4e-23 111.3 143 42.0
AUR62015565 Chenopodium quinoa HOM05D003989 ORTHO05D004626 3.2e-22 109.0 140 39.3
AUR62002143 Chenopodium quinoa HOM05D003989 ORTHO05D004626 4.2e-22 108.6 123 44.7
Hund03045 Selenicereus undatus HOM05D003989 ORTHO05D004626 1.2e-21 107.1 140 39.3
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 3.5e-21 105.5 105 47.6
AUR62015563 Chenopodium quinoa HOM05D003989 ORTHO05D004626 3.5e-21 105.5 121 43.8
EL10Ac3g05001 Beta vulgaris HOM05D003989 ORTHO05D004626 2.3e-20 102.8 101 51.5
Actinidia09544 Actinidia chinensis HOM05D003989 ORTHO05D004626 1.4e-17 93.6 61 70.5
Oeu025856.1 Olea europaea HOM05D003989 ORTHO05D004626 8.4e-15 84.3 62 59.7
BcaB06g28424 Brassica carinata HOM05D003989 ORTHO05D004626 2.1e-13 79.7 81 45.7
Cre16.g694703 Chlamydomonas reinhardtii HOM05D003989 ORTHO05D004626 2.5e-11 72.8 108 38.0
Medtr1g069890 Medicago truncatula HOM05D003989 ORTHO05D004626 1.4e-09 67.0 59 54.2
Carub.0007s3141 Capsella rubella HOM05D003989 ORTHO05D004626 5.5e-06 55.1 42 59.5


User provided reference genes

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