Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 1.5e-121 439.5 222 100.0
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 1.1e-87 327.0 217 73.7
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 3.3e-84 315.5 222 70.7
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 4.4e-84 315.1 223 70.0
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.3e-83 313.5 222 70.3
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 1.7e-83 313.2 231 68.0
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 1.7e-83 313.2 224 70.5
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.7e-83 313.2 222 70.7
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 2.8e-83 312.4 217 71.9
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 4.8e-83 311.6 224 67.9
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 6.3e-83 311.2 226 69.9
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 3.1e-82 308.9 221 69.7
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.1e-82 308.9 224 69.6
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 3.1e-82 308.9 230 67.4
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 5.3e-82 308.1 224 69.2
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 5.3e-82 308.1 224 69.2
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 7.0e-82 307.8 223 69.5
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 7.0e-82 307.8 222 68.5
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 9.1e-82 307.4 223 70.0
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.2e-81 307.0 223 68.6
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 1.2e-81 307.0 224 69.2
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.6e-81 306.6 221 68.8
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 1.6e-81 306.6 223 67.3
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 2.0e-81 306.2 223 69.1
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.6e-81 305.8 224 68.8
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 2.6e-81 305.8 217 71.0
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 3.5e-81 305.4 219 68.5
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 4.5e-81 305.1 211 71.1
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 7.7e-81 304.3 223 69.1
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 1.0e-80 303.9 225 68.9
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.0e-80 303.9 224 69.2
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 1.0e-80 303.9 224 70.5
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 1.7e-80 303.1 225 68.4
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 2.9e-80 302.4 216 67.1
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 2.9e-80 302.4 226 71.2
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 6.5e-80 301.2 221 68.3
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 8.5e-80 300.8 224 65.2
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 8.5e-80 300.8 226 65.9
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 8.5e-80 300.8 226 65.0
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 1.1e-79 300.4 218 68.3
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.1e-79 300.4 217 70.0
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 1.5e-79 300.1 228 68.9
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 3.2e-79 298.9 224 67.4
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 5.5e-79 298.1 226 65.0
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 5.5e-79 298.1 221 69.2
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 7.2e-79 297.7 224 67.9
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 7.2e-79 297.7 224 67.9
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 1.2e-78 297.0 226 65.9
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.6e-78 296.6 219 66.7
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 2.1e-78 296.2 226 64.2
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 2.1e-78 296.2 212 68.4
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 2.7e-78 295.8 226 64.2
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 2.7e-78 295.8 224 64.3
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 3.6e-78 295.4 224 64.7
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.7e-78 295.0 225 64.9
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 4.7e-78 295.0 224 66.5
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 4.7e-78 295.0 223 65.0
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 6.1e-78 294.7 224 62.9
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 6.1e-78 294.7 215 68.4
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 8.0e-78 294.3 224 63.8
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 8.0e-78 294.3 229 66.8
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 1.0e-77 293.9 224 63.8
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 1.4e-77 293.5 216 68.1
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.4e-77 293.5 225 64.4
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.4e-77 293.5 225 64.4
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 1.8e-77 293.1 222 64.4
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.8e-77 293.1 224 63.8
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 1.8e-77 293.1 220 67.7
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 3.0e-77 292.4 221 64.7
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 4.0e-77 292.0 228 63.6
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 4.0e-77 292.0 223 66.4
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 5.2e-77 291.6 229 64.2
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 8.8e-77 290.8 222 65.8
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 1.5e-76 290.0 220 65.0
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 4.4e-76 288.5 223 63.7
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 5.7e-76 288.1 217 65.0
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 5.7e-76 288.1 207 65.7
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 5.7e-76 288.1 225 65.8
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 7.5e-76 287.7 223 63.2
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 7.5e-76 287.7 219 66.2
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 7.5e-76 287.7 220 64.1
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 7.5e-76 287.7 218 66.1
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 9.7e-76 287.3 223 63.7
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 1.7e-75 286.6 224 62.9
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 1.7e-75 286.6 224 62.9
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 1.7e-75 286.6 225 63.1
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 1.7e-75 286.6 218 65.1
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.2e-75 286.2 225 66.7
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 2.8e-75 285.8 215 64.7
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 3.7e-75 285.4 222 63.5
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 3.7e-75 285.4 225 63.1
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 4.8e-75 285.0 223 65.9
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 4.8e-75 285.0 217 65.0
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 6.3e-75 284.6 218 66.1
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 6.3e-75 284.6 217 66.8
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.1e-74 283.9 215 64.2
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 1.8e-74 283.1 227 64.3
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.8e-74 283.1 223 63.2
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 1.8e-74 283.1 221 64.3
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.8e-74 283.1 228 61.0
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 1.8e-74 283.1 223 62.8
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 5.3e-74 281.6 221 63.8
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 7.0e-74 281.2 226 65.0
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 7.0e-74 281.2 224 61.6
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.2e-73 280.4 218 65.6
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.7e-73 279.3 214 63.1
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 3.5e-73 278.9 251 59.0
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 3.5e-73 278.9 228 60.5
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 4.5e-73 278.5 228 60.5
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 1.0e-72 277.3 220 64.1
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 1.7e-72 276.6 220 62.3
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 6.5e-72 274.6 229 62.9
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 6.5e-72 274.6 220 61.4
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 9.4e-71 270.8 220 61.8
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 1.6e-70 270.0 325 48.0
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 2.7e-70 269.2 217 60.4
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 5.2e-69 265.0 312 49.7
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 4.1e-66 255.4 222 56.3
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 1.9e-63 246.5 223 58.7
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 3.2e-63 245.7 173 71.1
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 1.8e-61 240.0 357 40.9
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 6.8e-61 238.0 223 57.4
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 6.8e-61 238.0 153 77.8
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 2.0e-60 236.5 224 54.5
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 1.0e-56 224.2 153 73.2
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 6.6e-56 221.5 152 71.7
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 8.9e-53 211.1 173 64.2
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 4.4e-52 208.8 152 68.4
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 3.0e-48 196.1 162 60.5
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 5.6e-47 191.8 125 76.0
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 1.0e-45 187.6 138 65.2
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 3.1e-45 186.0 130 70.8
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 2.9e-43 179.5 188 55.9
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 1.1e-42 177.6 140 65.7
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 9.2e-42 174.5 111 75.7
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 9.2e-42 174.5 111 75.7
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 7.8e-41 171.4 99 81.8
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 6.2e-38 161.8 95 82.1
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 6.8e-37 158.3 222 41.9
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 9.2e-34 147.9 190 40.5
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 1.9e-31 140.2 117 61.5
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 3.6e-30 136.0 117 57.3
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.4e-29 134.0 111 60.4
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 5.4e-26 122.1 121 52.9
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.6e-25 120.6 84 67.9
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 2.5e-23 113.2 145 42.8
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 2.4e-18 96.7 81 61.7
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 3.2e-18 96.3 107 48.6
MCO08G354 Micromonas commoda HOM05D004698 ORTHO05D005699 8.7e-16 88.2 200 29.0
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 1.6e-14 84.0 128 42.2
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 9.9e-12 74.7 56 66.1
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 6.7e-08 62.0 47 61.7
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.3e-07 59.3 75 42.7
Cfa026991 Carpinus fangiana HOM05D004698 ORTHO05D123152 7.4e-07 58.5 191 26.2


User provided reference genes

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