Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 2261.9 1154 100.0
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1769.6 1177 77.0
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1752.3 1092 80.2
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1744.2 1172 76.5
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1741.9 1169 75.7
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1736.9 1179 74.8
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1734.2 1165 77.0
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1729.9 1168 76.2
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1729.5 1178 75.0
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1728.8 1176 75.4
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1726.5 1160 75.9
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1724.1 1152 75.9
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1723.4 1179 75.5
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1722.6 1173 74.2
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1722.2 1172 74.8
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1720.3 1167 74.8
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1720.3 1168 74.8
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1712.2 1177 74.3
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1711.4 1170 74.6
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1711.0 1163 73.6
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1708.7 1174 74.5
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1707.2 1169 75.3
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1707.2 1167 74.5
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1705.3 1171 74.7
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1704.1 1179 74.2
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1703.7 1171 75.1
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1703.3 1177 73.8
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1703.0 1169 73.2
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1702.6 1167 74.1
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1702.2 1168 74.6
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1701.4 1176 74.0
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1700.3 1157 74.1
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1697.9 1165 73.0
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1696.4 1165 73.3
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1694.1 1161 74.6
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1691.4 1159 73.9
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1691.4 1160 74.0
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1691.0 1166 73.5
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1691.0 1171 75.0
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1690.2 1171 73.8
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1689.1 1163 73.3
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1689.1 1181 73.2
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1688.7 1161 73.4
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1688.3 1168 73.5
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1687.5 1170 75.1
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1687.5 1216 72.6
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1686.8 1167 73.4
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1685.2 1174 74.1
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1684.5 1170 74.4
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1684.1 1160 75.3
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1683.7 1159 74.1
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1683.7 1175 73.1
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1682.2 1172 72.9
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1680.6 1177 73.1
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1680.2 1205 72.8
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1680.2 1177 73.0
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1679.8 1179 73.5
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1678.3 1176 72.3
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1678.3 1177 72.8
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1677.5 1164 72.7
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1676.8 1209 72.3
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1675.6 1176 72.9
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1675.6 1179 73.1
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1674.8 1212 72.0
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1672.9 1179 73.7
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1672.1 1175 72.0
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1671.4 1181 73.3
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1669.4 1171 74.6
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1669.1 1168 72.9
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1667.5 1160 73.0
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1664.4 1161 74.6
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1661.0 1174 73.0
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1649.8 1178 72.5
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1648.3 1168 72.8
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1646.3 1155 71.6
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1644.4 1180 72.0
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1642.9 1186 70.7
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1642.1 1193 70.3
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1640.9 1193 70.2
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1640.2 1184 70.9
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1640.2 1093 75.0
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1639.8 1185 70.4
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1639.4 1188 70.9
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1639.4 1188 70.9
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1637.9 1184 70.9
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1637.5 1174 72.2
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1627.8 1204 69.4
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1626.3 1174 72.4
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1622.1 1094 74.2
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1614.7 1178 72.1
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1599.7 1164 69.7
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1570.4 1173 67.7
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1558.1 1337 63.0
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1555.8 1201 68.4
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1554.7 1149 68.5
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1541.6 1146 69.9
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1528.5 1146 66.4
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1501.9 1151 65.4
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1498.0 1151 65.6
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1485.3 1155 64.7
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1475.3 1156 64.4
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1460.7 1174 64.3
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1447.2 998 75.5
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1394.4 1157 65.4
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1355.9 940 73.9
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1310.4 851 77.7
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1276.5 809 78.4
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1243.4 842 74.5
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1208.7 802 75.3
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1152.1 912 63.2
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 0.0e+00 1131.7 1175 49.3
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1106.3 770 72.1
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 2.9e-296 1022.3 699 75.3
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 8.7e-277 957.6 647 75.0
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 5.5e-255 885.2 750 63.7
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 3.3e-252 875.9 579 77.4
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.2e-246 857.4 602 74.4
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.8e-243 846.3 549 78.1
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 5.2e-237 825.5 594 71.0
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 1.4e-229 800.8 630 65.4
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.1e-222 776.9 516 74.0
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 9.5e-207 724.9 466 76.0
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 1.6e-182 644.4 477 70.4
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 1.7e-176 624.4 400 77.0
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 5.0e-131 473.4 361 68.1
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 5.2e-128 463.4 344 70.6
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 2.3e-107 394.8 381 53.3
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 4.9e-94 350.5 264 67.4
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 7.8e-84 316.6 195 80.0
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 2.2e-46 192.2 170 61.2
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 2.8e-41 175.3 130 67.7
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 1.4e-37 162.9 146 61.0
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 8.2e-33 147.1 103 71.8
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 3.1e-32 145.2 164 54.9
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 5.3e-32 144.4 164 54.3
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 4.5e-31 141.4 109 66.1
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 1.7e-30 139.4 87 77.0
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 2.9e-30 138.7 94 74.5
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 8.5e-30 137.1 74 86.5
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 5.3e-16 91.3 98 52.0
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 8.5e-14 84.0 50 78.0
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.5e-13 82.4 50 74.0
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 3.2e-13 82.0 50 76.0
SEGI_20139 Sequoiadendron giganteum HOM05D000062 ORTHO05D000043 2.3e-11 75.9 67 61.2
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 3.8e-06 58.5 347 23.9


User provided reference genes

Program Settings