Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 1.0e-199 699.9 360 100.0
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 8.4e-69 265.0 354 42.7
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 2.7e-67 260.0 354 42.4
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 3.5e-67 259.6 353 42.5
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 1.7e-66 257.3 355 42.3
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 1.9e-65 253.8 353 44.5
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 5.6e-65 252.3 341 41.1
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 1.6e-64 250.8 364 41.8
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 3.6e-64 249.6 358 39.9
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 4.8e-64 249.2 341 40.5
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 3.1e-63 246.5 363 43.0
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 6.9e-63 245.4 341 41.6
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 6.9e-63 245.4 357 38.9
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 9.0e-63 245.0 346 42.5
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.5e-62 244.2 353 40.5
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 2.0e-62 243.8 358 40.2
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 2.6e-62 243.4 352 41.8
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 2.6e-62 243.4 336 39.3
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 2.6e-62 243.4 393 37.9
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.6e-62 243.4 353 40.2
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.6e-62 243.4 353 40.2
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 2.6e-62 243.4 344 42.2
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 3.4e-62 243.0 353 40.2
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 3.4e-62 243.0 355 41.1
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 4.5e-62 242.7 360 39.4
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 5.8e-62 242.3 350 40.6
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 7.6e-62 241.9 352 38.4
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 7.6e-62 241.9 353 40.2
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 9.9e-62 241.5 361 38.8
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 9.9e-62 241.5 362 40.3
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 2.9e-61 240.0 355 40.8
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 2.9e-61 240.0 355 41.1
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 4.9e-61 239.2 357 41.7
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 8.4e-61 238.4 352 40.3
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 8.4e-61 238.4 349 40.7
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.4e-60 237.7 361 38.5
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 1.4e-60 237.7 325 40.3
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.4e-60 236.9 353 39.7
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 3.2e-60 236.5 333 42.6
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 3.2e-60 236.5 358 41.1
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 4.2e-60 236.1 336 40.5
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 5.5e-60 235.7 354 39.5
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 5.5e-60 235.7 354 40.7
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 7.1e-60 235.3 331 41.1
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 1.6e-59 234.2 334 39.8
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 2.1e-59 233.8 354 39.5
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 2.1e-59 233.8 333 42.6
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 2.1e-59 233.8 341 39.6
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 2.1e-59 233.8 364 40.4
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.7e-59 233.4 351 39.3
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 2.7e-59 233.4 356 40.7
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 4.6e-59 232.6 358 41.9
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 4.6e-59 232.6 325 39.7
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 4.6e-59 232.6 343 40.2
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 1.0e-58 231.5 358 39.7
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 1.3e-58 231.1 334 39.5
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.3e-58 230.3 351 38.5
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 2.3e-58 230.3 347 40.3
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 3.0e-58 229.9 341 40.8
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 5.1e-58 229.2 399 34.8
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 1.5e-57 227.6 354 38.7
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 1.5e-57 227.6 329 39.8
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 1.5e-57 227.6 357 40.1
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 4.3e-57 226.1 345 38.8
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 5.6e-57 225.7 351 38.5
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 7.4e-57 225.3 340 39.7
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 7.4e-57 225.3 322 37.9
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 6.2e-56 222.2 353 37.7
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 8.1e-56 221.9 357 38.4
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.4e-55 221.1 322 37.6
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 1.8e-55 220.7 323 37.8
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 2.4e-55 220.3 356 38.8
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 2.4e-55 220.3 362 38.4
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 2.4e-55 220.3 341 39.3
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 4.0e-55 219.5 345 39.4
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 4.0e-55 219.5 351 37.0
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 4.0e-55 219.5 351 37.9
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 5.3e-55 219.2 340 38.8
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 6.9e-55 218.8 331 39.0
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 9.0e-55 218.4 339 38.3
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 9.0e-55 218.4 336 38.4
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 2.0e-54 217.2 347 38.6
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 4.5e-54 216.1 363 35.8
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 5.8e-54 215.7 299 43.1
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 5.8e-54 215.7 304 41.4
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 5.8e-54 215.7 350 39.7
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 1.0e-53 214.9 360 38.3
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 2.9e-53 213.4 353 36.8
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 2.9e-53 213.4 362 34.5
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 6.5e-53 212.2 348 38.2
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 8.4e-53 211.8 351 39.0
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 1.1e-52 211.5 382 36.1
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 1.9e-52 210.7 277 42.6
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 3.2e-52 209.9 331 40.8
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 4.2e-52 209.5 325 40.3
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 4.2e-52 209.5 338 36.7
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.2e-51 208.0 341 37.8
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 1.6e-51 207.6 392 35.7
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 3.5e-51 206.5 318 40.3
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 4.6e-51 206.1 282 40.8
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 7.9e-51 205.3 344 36.9
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.3e-50 204.5 346 36.7
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.3e-50 204.5 312 40.1
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.8e-50 204.1 362 36.2
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 2.3e-50 203.8 354 35.6
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 2.5e-49 200.3 354 35.0
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 3.3e-49 199.9 306 38.9
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 2.8e-48 196.8 351 36.5
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 1.1e-47 194.9 344 36.3
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 2.4e-47 193.7 351 35.0
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 6.9e-47 192.2 358 36.9
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 1.2e-46 191.4 442 31.2
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 2.0e-46 190.7 304 38.5
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.3e-45 188.0 367 34.1
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 3.5e-43 179.9 304 35.9
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 1.1e-41 174.9 256 41.8
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 1.5e-41 174.5 272 39.7
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.0e-38 164.1 325 32.9
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.9e-37 160.2 321 31.2
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.2e-35 154.8 262 37.0
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 2.4e-31 140.6 338 31.1
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 1.2e-30 138.3 231 36.4
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 2.9e-29 133.7 231 35.9
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.1e-28 131.7 191 40.8
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 9.4e-28 128.6 226 35.4
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 2.0e-25 120.9 231 36.8
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 3.3e-25 120.2 300 32.3
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 4.8e-24 116.3 237 36.7
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 4.2e-20 103.2 125 41.6
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.8e-18 97.8 171 36.3
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.5e-17 94.7 246 28.5
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 1.3e-16 91.7 127 40.2
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 5.0e-13 79.7 186 31.7
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 1.2e-11 75.1 241 28.2
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.0e-10 72.0 157 30.6
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 1.4e-10 71.6 154 33.1


User provided reference genes

Program Settings