Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 5.9e-206 720.7 382 100.0
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 6.4e-184 647.5 317 99.7
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 3.4e-137 492.3 312 74.7
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 7.6e-137 491.1 314 74.8
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 1.9e-135 486.5 315 74.3
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 2.5e-135 486.1 299 76.6
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 5.5e-135 485.0 316 73.4
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 7.1e-135 484.6 299 75.6
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 7.1e-135 484.6 311 73.6
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 9.3e-135 484.2 313 73.2
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 1.2e-134 483.8 316 73.1
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.2e-134 483.8 313 74.1
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.6e-134 483.4 316 73.1
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 2.7e-134 482.6 303 74.9
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 3.5e-134 482.3 321 72.9
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 3.5e-134 482.3 304 74.7
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 3.5e-134 482.3 319 71.5
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 4.6e-134 481.9 305 75.1
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 6.1e-134 481.5 311 72.0
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 1.0e-133 480.7 325 71.7
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.3e-133 480.3 308 72.4
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 1.8e-133 479.9 301 74.8
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 2.3e-133 479.6 329 71.1
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 3.0e-133 479.2 325 70.8
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 3.9e-133 478.8 312 71.5
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 3.9e-133 478.8 304 75.0
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 3.9e-133 478.8 304 75.0
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 3.9e-133 478.8 315 72.7
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 5.1e-133 478.4 304 76.3
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 6.7e-133 478.0 314 72.6
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 8.7e-133 477.6 315 72.1
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 8.7e-133 477.6 303 73.3
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 1.1e-132 477.2 299 74.9
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 1.5e-132 476.9 315 72.1
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 2.5e-132 476.1 305 74.1
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 2.5e-132 476.1 304 74.0
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 1.3e-131 473.8 307 74.3
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 2.2e-131 473.0 318 72.0
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 2.8e-131 472.6 328 70.1
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 2.8e-131 472.6 310 72.3
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 2.8e-131 472.6 310 72.3
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 2.8e-131 472.6 304 74.7
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 3.7e-131 472.2 316 72.2
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 6.3e-131 471.5 308 71.1
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 6.3e-131 471.5 305 73.1
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 8.2e-131 471.1 318 70.8
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 1.4e-130 470.3 314 70.4
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 2.4e-130 469.5 313 71.6
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 3.1e-130 469.2 303 72.9
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 4.1e-130 468.8 304 73.4
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 4.1e-130 468.8 312 71.5
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 5.3e-130 468.4 315 70.8
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 5.3e-130 468.4 314 72.0
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 5.3e-130 468.4 313 71.2
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 6.9e-130 468.0 314 71.3
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 6.9e-130 468.0 313 70.9
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 9.0e-130 467.6 303 74.6
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 9.0e-130 467.6 312 70.8
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 1.2e-129 467.2 301 74.1
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 1.5e-129 466.8 325 69.5
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 1.5e-129 466.8 302 73.5
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.5e-129 466.8 313 70.6
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 2.0e-129 466.5 304 72.4
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 2.0e-129 466.5 274 78.8
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 2.6e-129 466.1 310 72.3
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.4e-129 465.7 283 77.4
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 4.5e-129 465.3 309 70.2
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 7.7e-129 464.5 323 70.6
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 1.3e-128 463.8 300 72.0
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 1.7e-128 463.4 311 71.1
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 1.7e-128 463.4 305 73.1
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 1.7e-128 463.4 305 73.1
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 1.7e-128 463.4 311 69.5
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 1.7e-128 463.4 307 71.3
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 2.2e-128 463.0 304 71.4
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 2.2e-128 463.0 303 72.6
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 2.2e-128 463.0 316 69.3
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 2.2e-128 463.0 315 69.2
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 2.9e-128 462.6 297 73.4
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 3.8e-128 462.2 303 73.3
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 3.8e-128 462.2 315 70.8
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 6.5e-128 461.5 313 69.6
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 6.5e-128 461.5 299 73.6
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 6.5e-128 461.5 314 70.7
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 6.5e-128 461.5 315 69.8
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 8.5e-128 461.1 301 73.4
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 8.5e-128 461.1 300 73.7
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 8.5e-128 461.1 302 71.5
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 8.5e-128 461.1 315 70.8
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 8.5e-128 461.1 298 72.5
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 8.5e-128 461.1 300 72.3
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 1.1e-127 460.7 324 67.9
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 1.1e-127 460.7 301 72.8
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 1.4e-127 460.3 311 70.4
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 1.4e-127 460.3 299 72.9
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.4e-127 460.3 310 71.0
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 1.4e-127 460.3 281 77.2
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.9e-127 459.9 302 70.9
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 1.9e-127 459.9 303 72.6
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 1.9e-127 459.9 303 72.6
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 1.9e-127 459.9 303 72.6
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 1.9e-127 459.9 318 68.6
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 2.5e-127 459.5 301 73.1
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 2.5e-127 459.5 301 72.8
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 3.2e-127 459.1 299 73.2
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 3.2e-127 459.1 299 73.2
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 3.2e-127 459.1 292 75.3
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 4.2e-127 458.8 301 73.1
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 4.2e-127 458.8 299 72.6
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 7.2e-127 458.0 292 75.0
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 7.2e-127 458.0 310 70.3
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 9.4e-127 457.6 304 71.4
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 1.6e-126 456.8 305 69.8
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 2.1e-126 456.4 308 71.1
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 2.7e-126 456.1 323 68.1
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 4.6e-126 455.3 301 71.8
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 1.0e-125 454.1 317 68.8
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 3.9e-125 452.2 284 74.3
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 3.9e-125 452.2 289 73.4
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 8.8e-125 451.1 303 70.6
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 1.1e-124 450.7 324 67.0
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 2.5e-124 449.5 314 69.7
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 9.7e-124 447.6 302 70.5
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 3.7e-123 445.7 308 70.8
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 3.7e-123 445.7 324 66.4
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 4.8e-123 445.3 324 66.4
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 8.2e-123 444.5 324 66.4
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 2.4e-122 443.0 324 65.4
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.2e-121 440.7 297 69.0
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 1.5e-121 440.3 266 77.8
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.0e-121 439.9 341 63.6
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 2.6e-121 439.5 303 69.6
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 5.9e-121 438.3 300 68.0
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 1.1e-119 434.1 272 74.3
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 5.5e-119 431.8 318 68.2
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 6.1e-118 428.3 304 70.4
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.3e-117 426.4 312 66.7
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 2.4e-114 416.4 365 56.7
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 8.5e-112 407.9 324 63.3
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 1.2e-110 404.1 247 77.7
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 3.6e-110 402.5 305 64.6
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 5.2e-109 398.7 298 63.4
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 2.1e-102 376.7 314 62.4
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 2.8e-86 323.2 209 72.2
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 2.9e-80 303.1 197 71.6
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 2.8e-78 296.6 291 54.6
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 3.3e-71 273.1 180 69.4
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.5e-63 247.7 156 72.4
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.5e-63 247.7 156 72.4
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.9e-63 247.3 159 70.4
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.1e-54 217.2 170 63.5
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 1.5e-52 211.1 302 39.7
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 2.9e-51 206.8 273 39.9
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 3.0e-48 196.8 112 83.9
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.5e-44 184.5 277 39.0
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.0e-44 184.1 120 74.2
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 4.9e-35 152.9 110 65.5
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 3.3e-31 140.2 109 60.6
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 3.7e-30 136.7 209 37.3
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 2.1e-25 120.9 165 41.2
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.6e-25 119.8 88 62.5
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 5.7e-23 112.8 100 55.0
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 1.8e-21 107.8 83 56.6
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 7.6e-20 102.4 83 53.0
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 1.7e-19 101.3 116 46.6
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.7e-19 101.3 54 85.2
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 3.2e-18 97.1 114 47.4
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 1.6e-17 94.7 76 60.5
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 9.7e-15 85.5 47 85.1
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 2.8e-14 84.0 189 33.9
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 3.8e-11 73.6 43 76.7
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 3.8e-11 73.6 49 71.4
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 6.7e-08 62.8 37 75.7
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 2.2e-06 57.8 139 30.9
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 3.7e-06 57.0 32 75.0


User provided reference genes

Program Settings