Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 2.7e-80 302.0 155 100.0
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 4.0e-44 181.8 137 65.7
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 9.0e-44 180.6 137 66.4
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 2.0e-43 179.5 137 65.7
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 2.6e-43 179.1 137 65.7
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 2.6e-43 179.1 137 65.0
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 2.6e-43 179.1 137 64.2
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 2.6e-43 179.1 137 63.5
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 3.4e-43 178.7 137 63.5
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 5.8e-43 177.9 137 64.2
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 5.8e-43 177.9 136 65.4
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 5.8e-43 177.9 137 63.5
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 9.9e-43 177.2 137 64.2
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 9.9e-43 177.2 137 64.2
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 9.9e-43 177.2 137 62.8
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.3e-42 176.8 137 64.2
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 1.7e-42 176.4 137 65.7
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.7e-42 176.4 137 62.0
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 1.7e-42 176.4 137 64.2
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 1.7e-42 176.4 137 64.2
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 1.7e-42 176.4 137 65.0
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 2.2e-42 176.0 137 62.0
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 2.9e-42 175.6 137 62.8
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 3.8e-42 175.3 137 62.0
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 4.9e-42 174.9 137 65.0
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 4.9e-42 174.9 137 64.2
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 6.4e-42 174.5 137 62.8
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 6.4e-42 174.5 137 61.3
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 6.4e-42 174.5 137 62.0
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 8.4e-42 174.1 137 62.8
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 1.1e-41 173.7 137 65.7
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.1e-41 173.7 137 64.2
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 1.1e-41 173.7 137 62.8
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 1.1e-41 173.7 136 61.8
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 1.1e-41 173.7 137 64.2
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 1.1e-41 173.7 137 63.5
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 1.4e-41 173.3 137 63.5
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 1.4e-41 173.3 136 61.8
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 1.9e-41 172.9 137 60.6
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 2.4e-41 172.6 136 61.8
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 2.4e-41 172.6 137 62.8
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 2.4e-41 172.6 137 62.0
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 2.4e-41 172.6 137 61.3
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 2.4e-41 172.6 137 62.8
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 3.2e-41 172.2 139 59.7
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 4.2e-41 171.8 137 63.5
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 4.2e-41 171.8 137 63.5
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 5.4e-41 171.4 137 60.6
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 5.4e-41 171.4 137 60.6
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 5.4e-41 171.4 137 65.0
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 5.4e-41 171.4 137 59.9
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 5.4e-41 171.4 137 59.9
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 5.4e-41 171.4 137 62.0
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 7.1e-41 171.0 136 64.7
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 7.1e-41 171.0 138 61.6
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 7.1e-41 171.0 137 65.7
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 9.3e-41 170.6 137 61.3
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 9.3e-41 170.6 139 64.7
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 9.3e-41 170.6 137 65.7
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 1.2e-40 170.2 152 59.2
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.2e-40 170.2 137 59.9
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.2e-40 170.2 137 59.9
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.2e-40 170.2 137 59.9
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 1.6e-40 169.9 136 61.0
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.6e-40 169.9 137 61.3
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 3.5e-40 168.7 153 56.2
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 4.6e-40 168.3 136 60.3
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 6.0e-40 167.9 137 60.6
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 7.8e-40 167.5 142 56.3
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 1.3e-39 166.8 136 62.5
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 1.7e-39 166.4 137 59.9
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.3e-39 166.0 137 59.1
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 2.3e-39 166.0 127 65.4
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 5.1e-39 164.9 136 60.3
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 6.6e-39 164.5 136 56.6
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 6.6e-39 164.5 127 63.0
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 8.7e-39 164.1 137 57.7
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 1.1e-38 163.7 137 59.9
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 1.1e-38 163.7 137 59.1
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.5e-38 163.3 136 56.6
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 1.5e-38 163.3 137 61.3
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 1.5e-38 163.3 137 58.4
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 1.9e-38 162.9 137 61.3
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 2.5e-38 162.5 137 56.2
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 3.3e-38 162.2 136 58.8
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 5.6e-38 161.4 136 59.6
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 9.6e-38 160.6 137 56.9
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 1.3e-37 160.2 127 63.8
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 1.6e-37 159.8 127 62.2
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 2.1e-37 159.5 137 55.5
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 2.1e-37 159.5 136 55.9
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 2.1e-37 159.5 137 55.5
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 2.8e-37 159.1 137 55.5
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 2.8e-37 159.1 137 55.5
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 2.8e-37 159.1 137 59.9
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 3.6e-37 158.7 137 55.5
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 3.6e-37 158.7 124 62.9
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 3.6e-37 158.7 136 57.4
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 3.6e-37 158.7 136 55.1
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 4.8e-37 158.3 137 55.5
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 8.1e-37 157.5 137 55.5
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 8.1e-37 157.5 137 59.9
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 8.1e-37 157.5 136 57.4
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 8.1e-37 157.5 136 57.4
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 1.1e-36 157.1 137 58.4
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.4e-36 156.8 136 56.6
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.4e-36 156.8 136 56.6
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.8e-36 156.4 137 52.6
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.8e-36 156.4 118 66.9
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.8e-36 156.4 127 61.4
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 2.4e-36 156.0 139 55.4
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 3.1e-36 155.6 131 55.7
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 3.1e-36 155.6 131 55.7
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 3.1e-36 155.6 131 55.7
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 3.1e-36 155.6 127 60.6
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 6.9e-36 154.5 131 55.0
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 6.9e-36 154.5 131 55.0
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 6.9e-36 154.5 129 62.8
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 9.0e-36 154.1 133 54.9
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 1.2e-35 153.7 133 57.1
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 2.0e-35 152.9 152 51.3
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.6e-35 152.5 127 57.5
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 2.6e-35 152.5 137 55.5
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 5.8e-35 151.4 127 59.8
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 1.7e-34 149.8 142 56.3
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 2.2e-34 149.4 133 58.6
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 3.8e-34 148.7 137 60.6
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 6.4e-34 147.9 127 56.7
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 7.1e-33 144.4 137 56.9
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 9.3e-33 144.1 136 54.4
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 2.1e-32 142.9 107 66.4
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 2.7e-32 142.5 137 49.6
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 4.6e-32 141.7 107 65.4
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 6.0e-32 141.4 107 64.5
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 1.8e-31 139.8 107 65.4
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 7.4e-30 134.4 107 60.7
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.3e-29 133.7 106 63.2
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.7e-29 132.1 106 62.3
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 1.4e-28 130.2 107 60.7
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 2.0e-27 126.3 133 50.4
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 2.0e-27 126.3 133 50.4
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 8.4e-26 120.9 108 55.6
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 8.4e-18 94.4 136 39.0
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 1.1e-17 94.0 136 39.0
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 6.1e-16 88.2 126 38.1
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 5.3e-12 75.1 68 58.8
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 1.5e-11 73.6 156 32.1


User provided reference genes

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