Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09615 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 1.7e-64 249.2 125 100.0
SEGI_30050 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 5.9e-46 187.6 95 98.9
Ah.05g170380 Amaranthus hybridus HOM05D003637 ORTHO05D004175 1.2e-35 153.3 97 78.4
AUR62013381 Chenopodium quinoa HOM05D003637 ORTHO05D004175 2.3e-34 149.1 97 75.3
AUR62038534 Chenopodium quinoa HOM05D003637 ORTHO05D004175 2.3e-34 149.1 97 75.3
Hund26943 Selenicereus undatus HOM05D003637 ORTHO05D004175 6.8e-34 147.5 97 73.2
EL10Ac1g01273 Beta vulgaris HOM05D003637 ORTHO05D004175 2.6e-33 145.6 97 73.2
Sc25g0003100 Simmondsia chinensis HOM05D003637 ORTHO05D004175 2.6e-33 145.6 97 71.1
PGR042G1411 Punica granatum HOM05D003637 ORTHO05D004175 3.4e-33 145.2 97 71.1
TAR628G0957 Trochodendron aralioides HOM05D003637 ORTHO05D004175 2.2e-32 142.5 97 70.1
CSS0048399 Camellia sinensis var. sinensis HOM05D003637 ORTHO05D004175 2.8e-32 142.1 97 70.1
PGR083G1739 Punica granatum HOM05D003637 ORTHO05D004175 4.9e-32 141.4 97 69.1
Aqoxy1G03903 Aquilegia oxysepala HOM05D003637 ORTHO05D004175 6.3e-32 141.0 97 71.1
vmacro18731 Vaccinium macrocarpon HOM05D003637 ORTHO05D004175 1.1e-31 140.2 95 69.5
arahy.Tifrunner.gnm1.ann1.ICJU69 Arachis hypogaea HOM05D003637 ORTHO05D004175 1.4e-31 139.8 116 62.1
Haze_13959 Corylus avellana HOM05D003637 ORTHO05D004175 1.4e-31 139.8 96 70.8
Cfa008076 Carpinus fangiana HOM05D003637 ORTHO05D004175 3.1e-31 138.7 96 68.8
CDE10G0032 Ceratophyllum demersum HOM05D003637 ORTHO05D004175 3.1e-31 138.7 96 72.9
ATR1136G178 Amborella trichopoda HOM05D003637 ORTHO05D004175 4.1e-31 138.3 97 68.0
Cfa004677 Carpinus fangiana HOM05D003637 ORTHO05D004175 7.0e-31 137.5 96 67.7
Rhsim08G0251700 Rhododendron simsii HOM05D003637 ORTHO05D004175 7.0e-31 137.5 97 69.1
QL09p050166 Quercus lobata HOM05D003637 ORTHO05D004175 1.2e-30 136.7 97 68.0
TPR.G8734 Trifolium pratense HOM05D003637 ORTHO05D004175 1.2e-30 136.7 97 71.1
arahy.Tifrunner.gnm1.ann1.JT5ZHZ Arachis hypogaea HOM05D003637 ORTHO05D004175 1.6e-30 136.3 97 69.1
CiPaw.03G014200 Carya illinoinensis HOM05D003637 ORTHO05D004175 2.0e-30 136.0 97 69.1
Medtr1g057860 Medicago truncatula HOM05D003637 ORTHO05D004175 2.0e-30 136.0 97 71.1
Oeu004354.1 Olea europaea HOM05D003637 ORTHO05D004175 2.0e-30 136.0 97 68.0
Psat6g083160 Pisum sativum HOM05D003637 ORTHO05D004175 2.0e-30 136.0 97 71.1
DCAR_014239 Daucus carota HOM05D003637 ORTHO05D004175 2.7e-30 135.6 97 68.0
Manes.02G201900 Manihot esculenta HOM05D003637 ORTHO05D004175 2.7e-30 135.6 97 68.0
Oeu015342.1 Olea europaea HOM05D003637 ORTHO05D004175 2.7e-30 135.6 97 68.0
GSVIVG01036287001 Vitis vinifera HOM05D003637 ORTHO05D004175 2.7e-30 135.6 97 68.0
Nn3g21609 Nelumbo nucifera HOM05D003637 ORTHO05D004175 3.5e-30 135.2 97 68.0
Potri.019G071400 Populus trichocarpa HOM05D003637 ORTHO05D004175 4.5e-30 134.8 97 69.1
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 4.5e-30 134.8 97 69.1
CANSAT64G0718 Cannabis sativa HOM05D003637 ORTHO05D004175 5.9e-30 134.4 97 69.1
Migut.E00203 Erythranthe guttata HOM05D003637 ORTHO05D004175 5.9e-30 134.4 97 66.0
MBI06_g32172_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 7.8e-30 134.0 98 69.4
QL09p001806 Quercus lobata HOM05D003637 ORTHO05D004175 7.8e-30 134.0 97 67.0
QL11p001805 Quercus lobata HOM05D003637 ORTHO05D004175 7.8e-30 134.0 97 67.0
arahy.Tifrunner.gnm1.ann1.5D638A Arachis hypogaea HOM05D003637 ORTHO05D004175 1.0e-29 133.7 97 68.0
Eucgr.F02946 Eucalyptus grandis HOM05D003637 ORTHO05D004175 1.0e-29 133.7 97 67.0
Lj4g0018134 Lotus japonicus HOM05D003637 ORTHO05D004175 1.0e-29 133.7 97 68.0
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 1.0e-29 133.7 97 68.0
arahy.Tifrunner.gnm1.ann1.TE3K01 Arachis hypogaea HOM05D003637 ORTHO05D004175 1.3e-29 133.3 97 68.0
RcHm_v2.0_Chr6g0251201 Rosa chinensis HOM05D003637 ORTHO05D004175 1.3e-29 133.3 97 66.0
CANSAT35G0345 Cannabis sativa HOM05D003637 ORTHO05D004175 1.7e-29 132.9 97 68.0
Ciclev10018820m.g Citrus clementina HOM05D003637 ORTHO05D004175 1.7e-29 132.9 97 66.0
Eucgr.E00010 Eucalyptus grandis HOM05D003637 ORTHO05D004175 1.7e-29 132.9 97 67.0
HanXRQChr07g0194841 Helianthus annuus HOM05D003637 ORTHO05D004175 1.7e-29 132.9 97 66.0
Lalb_Chr16g0387641 Lupinus albus HOM05D003637 ORTHO05D004175 1.7e-29 132.9 97 67.0
TPR.G29194 Trifolium pratense HOM05D003637 ORTHO05D004175 2.3e-29 132.5 97 69.1
Mapoly0125s0016 Marchantia polymorpha HOM05D003637 ORTHO05D004175 2.9e-29 132.1 97 64.9
Prupe.8G006900 Prunus persica HOM05D003637 ORTHO05D004175 2.9e-29 132.1 97 67.0
QL93p0073_0666 Quercus lobata HOM05D003637 ORTHO05D004175 2.9e-29 132.1 96 66.7
FvH4_2g00780 Fragaria vesca HOM05D003637 ORTHO05D004175 3.8e-29 131.7 97 64.9
FAN24G0737 Fragaria x ananassa HOM05D003637 ORTHO05D004175 3.8e-29 131.7 97 64.9
FAN27G1433 Fragaria x ananassa HOM05D003637 ORTHO05D004175 3.8e-29 131.7 97 64.9
Glyma.08G042400 Glycine max HOM05D003637 ORTHO05D004175 3.8e-29 131.7 97 68.0
MBI03_g13500_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 3.8e-29 131.7 98 66.3
MD05G1003500 Malus domestica HOM05D003637 ORTHO05D004175 3.8e-29 131.7 97 66.0
QL08p063032 Quercus lobata HOM05D002302 ORTHO05D002728 3.8e-29 131.7 96 66.7
Ca_14602_v3 Cicer arietinum L. HOM05D003637 ORTHO05D004175 6.6e-29 131.0 97 68.0
MD10G1004600 Malus domestica HOM05D003637 ORTHO05D004175 6.6e-29 131.0 97 67.0
THA.LOC104820917 Tarenaya hassleriana HOM05D003637 ORTHO05D004175 6.6e-29 131.0 97 64.9
CsaV3_2G033230 Cucumis sativus L. HOM05D003637 ORTHO05D004175 8.6e-29 130.6 97 64.9
FAN20G2805 Fragaria x ananassa HOM05D003637 ORTHO05D004175 8.6e-29 130.6 97 64.9
QL05p083460 Quercus lobata HOM05D002302 ORTHO05D004175 8.6e-29 130.6 96 65.6
MELO3C008093.2 Cucumis melo HOM05D003637 ORTHO05D004175 1.1e-28 130.2 97 64.9
QL07p006103 Quercus lobata HOM05D000176 ORTHO05D000106 1.1e-28 130.2 96 65.6
MSTRG.13350 Avicennia marina HOM05D003637 ORTHO05D004175 1.5e-28 129.8 97 63.9
Glyma.05G234900 Glycine max HOM05D003637 ORTHO05D004175 1.5e-28 129.8 97 68.0
Cpa.g.sc1431.2 Carica papaya HOM05D003637 ORTHO05D004175 1.9e-28 129.4 97 63.9
TWI38G2004 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 1.9e-28 129.4 97 61.9
TWI39G1182 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 1.9e-28 129.4 97 62.9
Atru.chr13.2499 Acer truncatum HOM05D003637 ORTHO05D004175 2.5e-28 129.0 97 64.9
Atru.chr13.2508 Acer truncatum HOM05D003637 ORTHO05D004175 2.5e-28 129.0 97 64.9
Sed0019638 Sechium edule HOM05D003637 ORTHO05D004175 2.5e-28 129.0 97 66.0
ClCG11G008420 Citrullus lanatus HOM05D003637 ORTHO05D004175 3.3e-28 128.6 96 66.7
Lj9C543T19 Lonicera japonica HOM05D003637 ORTHO05D004175 4.3e-28 128.3 96 62.5
Medtr5g091860 Medicago truncatula HOM05D003637 ORTHO05D004175 4.3e-28 128.3 95 68.4
Peaxi162Scf00194g01048 Petunia axillaris HOM05D003637 ORTHO05D004175 4.3e-28 128.3 96 64.6
SalBow8G3371 Salvia bowleyana HOM05D003637 ORTHO05D004175 4.3e-28 128.3 96 65.6
PSO782G5164 Papaver somniferum HOM05D003637 ORTHO05D004175 5.6e-28 127.9 97 64.9
VMungo0251G0405 Vigna mungo HOM05D003637 ORTHO05D004175 5.6e-28 127.9 97 67.0
HPP92_000901 Vanilla planifolia HOM05D003637 ORTHO05D004175 7.3e-28 127.5 97 68.0
Os05g0150900 Oryza sativa ssp. japonica HOM05D003637 ORTHO05D004175 9.5e-28 127.1 97 64.9
Eucgr.E00009 Eucalyptus grandis HOM05D003637 ORTHO05D004175 1.2e-27 126.7 96 63.5
Zm00001eb354240 Zea mays HOM05D003637 ORTHO05D004175 2.1e-27 125.9 97 61.9
PSO063G3025 Papaver somniferum HOM05D003637 ORTHO05D004175 2.8e-27 125.6 97 63.9
Cc04_g00120 Coffea canephora HOM05D003637 ORTHO05D004175 3.6e-27 125.2 97 63.9
Zm00001eb267790 Zea mays HOM05D003637 ORTHO05D004175 1.0e-26 123.6 97 62.9
PSO513G0157 Papaver somniferum HOM05D003637 ORTHO05D004175 1.4e-26 123.2 94 63.8
Phvul.002G320100 Phaseolus vulgaris HOM05D003637 ORTHO05D004175 1.4e-26 123.2 97 64.9
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 1.8e-26 122.9 97 60.8
CAN.G1379.10 Capsicum annuum HOM05D003637 ORTHO05D004175 4.0e-26 121.7 97 62.9
Duzib106G1310 Durio zibethinus HOM05D003637 ORTHO05D004175 5.2e-26 121.3 98 63.3
ECA238G2554 Erigeron canadensis HOM05D003637 ORTHO05D004175 5.2e-26 121.3 97 60.8
Lsat_1_v5_gn_8_62500 Lactuca sativa HOM05D003637 ORTHO05D004175 5.2e-26 121.3 99 58.6
Nitab4.5_0000110g0370 Nicotiana tabacum HOM05D003637 ORTHO05D004175 5.2e-26 121.3 97 61.9
AagrBONN_evm.TU.Sc2ySwM_344.5308 Anthoceros agrestis HOM05D003637 ORTHO05D004175 8.9e-26 120.6 97 64.9
Solyc01g102800.3 Solanum lycopersicum HOM05D003637 ORTHO05D004175 8.9e-26 120.6 97 61.9
Sopen01g045200 Solanum pennellii HOM05D003637 ORTHO05D004175 8.9e-26 120.6 97 61.9
PGSC0003DMG400018260 Solanum tuberosum HOM05D003637 ORTHO05D004175 8.9e-26 120.6 97 61.9
Thecc.05G195900 Theobroma cacao HOM05D003637 ORTHO05D004175 1.2e-25 120.2 99 61.6
Duzib177G0609 Durio zibethinus HOM05D003637 ORTHO05D004175 1.5e-25 119.8 99 61.6
Nitab4.5_0003246g0090 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.5e-25 119.8 96 61.5
Aa31LG11G13210 Aethionema arabicum HOM05D003637 ORTHO05D004175 2.0e-25 119.4 93 61.3
CARHR076770 Cardamine hirsuta HOM05D003637 ORTHO05D004175 2.6e-25 119.0 93 62.4
Aa31LG5G13230 Aethionema arabicum HOM05D003637 ORTHO05D004175 5.8e-25 117.9 93 62.4
CBR_g19630 Chara braunii HOM05D003637 ORTHO05D004175 7.5e-25 117.5 104 56.7
Gohir.A08G225700 Gossypium hirsutum HOM05D003637 ORTHO05D004175 7.5e-25 117.5 99 61.6
Gohir.D08G246100 Gossypium hirsutum HOM05D003637 ORTHO05D004175 7.5e-25 117.5 99 61.6
Lsat_1_v5_gn_2_108061 Lactuca sativa HOM05D003637 ORTHO05D004175 7.5e-25 117.5 97 60.8
BcaB04g19390 Brassica carinata HOM05D003637 ORTHO05D004175 9.8e-25 117.1 93 62.4
BraA03t12479Z Brassica rapa HOM05D003637 ORTHO05D004175 1.7e-24 116.3 93 62.4
Thhalv10020033m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 1.7e-24 116.3 93 62.4
C03p40270 Brassica napus HOM05D003637 ORTHO05D004175 2.2e-24 115.9 93 62.4
BolC3t16292H Brassica oleracea HOM05D003637 ORTHO05D004175 2.2e-24 115.9 93 62.4
PSO210G5637 Papaver somniferum HOM05D003637 ORTHO05D004175 3.7e-24 115.2 98 60.2
COL.COLO4_20337 Corchorus olitorius HOM05D003637 ORTHO05D004175 4.9e-24 114.8 99 58.6
Gorai.004G262600 Gossypium raimondii HOM05D003637 ORTHO05D004175 4.9e-24 114.8 99 60.6
AL3G12170 Arabidopsis lyrata HOM05D003637 ORTHO05D004175 6.4e-24 114.4 93 62.4
AT3G02760 Arabidopsis thaliana HOM05D003637 ORTHO05D004175 6.4e-24 114.4 93 62.4
BcaNung05408 Brassica carinata HOM05D003637 ORTHO05D004175 8.3e-24 114.0 93 61.3
A03p33090 Brassica napus HOM05D003637 ORTHO05D004175 1.1e-23 113.6 93 61.3
Carub.0003s0186 Capsella rubella HOM05D003637 ORTHO05D004175 1.1e-23 113.6 93 62.4
Sp3g01790 Schrenkiella parvula HOM05D003637 ORTHO05D004175 1.1e-23 113.6 93 61.3
BcaB04g21398 Brassica carinata HOM05D003637 ORTHO05D004175 1.4e-23 113.2 93 60.2
Nitab4.5_0001497g0160 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.4e-23 113.2 96 58.3
BNapus_Darmor_BZH_scaffold_122p00030 Brassica napus HOM05D003637 ORTHO05D004175 3.2e-23 112.1 93 60.2
BolC1t05898H Brassica oleracea HOM05D003637 ORTHO05D004175 3.2e-23 112.1 93 60.2
Haze_10274 Corylus avellana HOM05D000058 ORTHO05D004175 3.2e-23 112.1 113 53.1
BNapus_Darmor_BZH_scaffold_99p00050 Brassica napus HOM05D003637 ORTHO05D004175 2.7e-22 109.0 93 59.1
Lsat_1_v5_gn_3_107861 Lactuca sativa HOM05D003637 ORTHO05D004175 3.5e-22 108.6 97 58.8
HanXRQChr01g0009571 Helianthus annuus HOM05D003637 ORTHO05D004175 6.0e-22 107.8 83 61.4
Nitab4.5_0002446g0080 Nicotiana tabacum HOM05D003637 ORTHO05D004175 1.1e-20 103.6 110 46.4
Medtr1g057880 Medicago truncatula HOM05D003637 ORTHO05D004175 5.6e-20 101.3 95 57.9
Thhalv10001912m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 2.8e-19 99.0 97 49.5
Medtr1g022010 Medicago truncatula HOM05D003637 ORTHO05D004175 5.2e-18 94.7 97 54.6
Cfa022007 Carpinus fangiana HOM05D003637 ORTHO05D004175 1.7e-16 89.7 94 50.0
Cre02.g142352 Chlamydomonas reinhardtii HOM05D003637 ORTHO05D004175 1.2e-14 83.6 95 46.3
PSO210G6366 Papaver somniferum HOM05D003637 ORTHO05D004175 4.3e-12 75.1 94 45.7
Nn1g00273 Nelumbo nucifera HOM05D003637 ORTHO05D004175 9.5e-12 73.9 79 51.9
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 1.4e-10 70.1 57 59.6
TAR374G1272 Trochodendron aralioides HOM05D003637 ORTHO05D004175 6.8e-10 67.8 38 76.3
Cc11_g04140 Coffea canephora HOM05D003637 ORTHO05D004175 1.6e-06 56.6 30 83.3


User provided reference genes

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