Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 3753.8 1905 100.0
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 3179.0 1599 100.0
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 1555.4 1911 47.3
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 1553.9 1897 47.8
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 1546.2 1909 46.8
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 1543.5 1904 47.8
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 1526.9 1907 47.3
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 1522.3 1916 46.7
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1519.2 1882 49.0
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 1513.4 1866 47.7
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 1503.8 1895 46.6
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 1497.3 1896 46.7
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 1494.2 1894 46.3
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 1484.2 1955 45.8
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 1479.2 1911 46.0
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 1470.7 1896 45.7
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 1467.2 1904 45.7
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 1444.1 1896 44.5
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 1442.2 1907 45.0
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 1441.4 1865 45.7
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 1441.0 1899 45.0
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 1432.9 1924 44.8
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 1430.6 1913 45.8
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 1429.5 1962 44.3
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 1421.8 1905 45.0
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1419.4 1905 45.1
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 1419.4 1918 44.9
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1417.5 1903 46.1
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1415.2 1912 45.9
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1414.4 1907 45.0
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 1411.0 1911 45.5
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 1410.6 1903 44.3
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 1407.1 1911 45.5
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1404.8 1922 45.1
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 1404.0 1869 45.7
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 1399.8 1904 45.1
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 1398.3 2038 42.6
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 1396.7 1897 44.8
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 1396.3 1895 45.5
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 1394.8 1916 43.6
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1393.3 1948 44.7
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 1392.9 1902 44.6
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 1392.9 1902 44.5
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 1390.9 1901 44.3
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 1384.8 1909 44.6
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 1384.4 1912 44.3
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 1378.2 1887 44.7
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 1377.8 1894 44.6
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 1375.5 1868 44.1
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 1374.4 1909 44.0
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 1374.4 1900 43.7
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 1374.4 1902 44.1
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1373.6 1915 44.9
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 1365.5 1936 43.8
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 1365.1 1910 44.3
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 1361.3 1906 44.4
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 1358.6 1905 44.4
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 1357.4 1899 43.9
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 1354.3 1860 44.3
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1340.9 1981 41.9
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 1340.5 1944 43.4
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 1332.0 1893 43.4
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1324.7 1912 42.2
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 1320.8 1909 43.7
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 1318.1 1868 42.6
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 1309.3 1990 43.1
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 1304.7 1742 45.9
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 1291.9 1911 43.1
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1287.3 1925 43.2
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1285.0 1888 43.1
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1283.5 1913 41.5
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 1261.9 1904 40.5
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 1257.7 1899 40.9
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 1253.0 1903 40.9
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 1247.6 1900 41.0
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 1247.3 1897 40.9
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1244.6 1925 41.8
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 1235.7 1906 40.8
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1219.9 1901 40.1
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1218.8 1864 40.8
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 1218.4 1929 40.2
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1216.1 1788 41.5
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1215.3 1897 40.3
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1212.2 1860 40.8
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1209.9 1537 46.0
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1193.3 1696 42.2
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1190.3 1398 47.4
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 1187.9 1568 45.1
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1184.1 1854 40.6
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1180.6 1894 39.9
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1171.0 1872 39.9
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1170.6 1897 39.2
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1166.0 1699 42.0
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1139.8 1863 41.8
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1127.5 1774 40.9
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1094.3 1521 43.6
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1084.7 1916 37.8
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 5.4e-308 1062.0 1439 44.0
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 3.3e-297 1026.2 2007 36.6
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 4.0e-287 992.6 1264 44.9
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 2.2e-264 917.1 1222 44.1
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 7.7e-262 908.7 1954 35.7
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 3.9e-258 896.3 1315 43.0
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 9.1e-239 832.0 1012 46.5
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 2.0e-233 814.3 787 53.0
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 3.6e-219 766.9 782 51.9
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 1.3e-213 748.4 792 50.6
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 7.3e-212 742.7 1077 41.8
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 3.6e-211 740.3 1791 34.1
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 4.4e-209 733.4 1095 44.7
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 2.3e-202 711.1 860 46.3
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 2.0e-201 708.0 1926 31.3
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 2.7e-190 671.0 1865 31.7
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 2.1e-158 565.1 1419 34.0
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 1.3e-155 555.8 1334 31.9
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 1.5e-148 532.3 1027 33.9
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 8.5e-144 516.5 594 45.3
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 3.4e-137 494.6 440 56.4
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.8e-122 445.7 680 43.5
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 1.2e-113 416.4 243 84.8
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 6.5e-112 410.6 1051 31.5
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 3.0e-109 401.7 331 58.9
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.9e-90 339.3 818 35.8
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-78 299.7 1095 26.8
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 3.2e-74 285.4 525 40.4
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 3.5e-65 255.4 285 50.2
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 3.3e-63 248.8 306 42.8
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 3.0e-56 225.7 233 53.2
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 1.2e-52 213.8 192 58.3
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 3.1e-45 189.1 411 35.0
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 5.3e-45 188.3 157 59.2
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 1.7e-43 183.3 408 38.7
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 9.0e-37 161.0 237 41.4
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 8.5e-35 154.5 637 25.7
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 1.4e-34 153.7 322 36.6
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 3.6e-33 149.1 231 42.4
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 1.1e-29 137.5 271 35.1
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 1.4e-26 127.1 72 72.2
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 6.7e-24 118.2 324 32.1
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 1.3e-22 114.0 379 31.1
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 2.2e-22 113.2 94 58.5
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 2.4e-21 109.8 253 32.8
SEGI_00563 Sequoiadendron giganteum HOM05D022280 ORTHO05D017116 3.4e-20 105.9 54 94.4
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 7.2e-18 98.2 267 30.7
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 1.2e-17 97.4 133 45.1
SEGI_21593 Sequoiadendron giganteum HOM05D000234 ORTHO05D000335 8.8e-16 91.3 54 77.8
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 2.6e-15 89.7 196 33.7
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 9.7e-15 87.8 84 51.2
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 9.7e-15 87.8 84 51.2
SEGI_38891 Sequoiadendron giganteum HOM05D000660 ORTHO05D003823 2.2e-14 86.7 105 43.8
SEGI_38687 Sequoiadendron giganteum HOM05D004367 ORTHO05D004937 1.4e-13 84.0 54 70.4
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 7.0e-13 81.6 113 42.5
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 9.1e-13 81.3 113 42.5
SEGI_24641 Sequoiadendron giganteum HOM05D000324 ORTHO05D001545 9.1e-13 81.3 53 69.8
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 4.5e-12 79.0 158 31.0
SEGI_00149 Sequoiadendron giganteum HOM05D000371 ORTHO05D006177 4.5e-12 79.0 55 61.8
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 5.9e-12 78.6 57 59.6
SEGI_09370 Sequoiadendron giganteum HOM05D000371 ORTHO05D006177 5.9e-12 78.6 55 61.8
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.0e-11 77.8 54 64.8
SEGI_30817 Sequoiadendron giganteum HOM05D004444 ORTHO05D005246 1.0e-11 77.8 61 63.9
SEGI_12964 Sequoiadendron giganteum HOM05D006469 ORTHO05D008034 1.7e-11 77.0 54 64.8
SEGI_23142 Sequoiadendron giganteum HOM05D001555 ORTHO05D009691 2.5e-10 73.2 54 61.1
SEGI_00840 Sequoiadendron giganteum HOM05D001929 ORTHO05D018395 7.2e-10 71.6 52 61.5
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.2e-09 70.9 44 79.5
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 2.1e-09 70.1 208 30.3
SEGI_05537 Sequoiadendron giganteum HOM05D012169 ORTHO05D387262 3.6e-09 69.3 53 62.3
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 2.6e-07 63.2 182 25.8
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 1.3e-06 60.8 164 27.4
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 6.3e-06 58.5 183 25.1


User provided reference genes

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