Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 1.6e-255 885.6 438 100.0
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.7e-178 629.0 386 78.2
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 5.1e-177 624.8 423 71.6
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 1.1e-176 623.6 406 73.9
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 3.3e-176 622.1 365 81.4
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 1.2e-175 620.2 401 74.6
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 8.1e-175 617.5 428 71.5
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 1.1e-174 617.1 390 74.9
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 1.4e-174 616.7 422 73.2
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 1.4e-174 616.7 414 72.5
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 1.8e-174 616.3 391 74.9
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 3.1e-174 615.5 408 74.3
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 4.0e-174 615.1 407 74.2
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 5.3e-174 614.8 426 71.6
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 6.9e-174 614.4 429 71.1
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 1.2e-173 613.6 423 72.1
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 1.2e-173 613.6 446 69.1
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 1.2e-173 613.6 443 70.9
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 2.0e-173 612.8 415 71.3
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 2.6e-173 612.5 394 74.4
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 2.6e-173 612.5 389 75.3
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 3.4e-173 612.1 442 70.1
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 4.4e-173 611.7 391 75.2
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 5.8e-173 611.3 389 76.1
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 9.9e-173 610.5 429 70.6
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 9.9e-173 610.5 401 72.8
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 1.7e-172 609.8 387 74.7
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 1.7e-172 609.8 372 77.7
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 2.2e-172 609.4 437 70.0
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 3.8e-172 608.6 445 69.9
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 3.8e-172 608.6 431 69.6
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 4.9e-172 608.2 426 71.1
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 4.9e-172 608.2 423 71.4
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 4.9e-172 608.2 437 68.4
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 8.4e-172 607.4 416 72.6
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 8.4e-172 607.4 385 75.1
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 1.1e-171 607.1 387 76.7
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 1.1e-171 607.1 360 80.3
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.1e-171 607.1 356 80.9
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 1.1e-171 607.1 429 70.4
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 1.1e-171 607.1 436 68.8
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 1.4e-171 606.7 386 75.9
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 1.4e-171 606.7 427 70.5
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.4e-171 606.7 427 70.5
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.4e-171 606.7 385 76.4
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 1.9e-171 606.3 360 79.7
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 1.9e-171 606.3 398 73.6
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 3.2e-171 605.5 415 70.1
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 4.2e-171 605.1 360 79.2
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 5.4e-171 604.7 394 73.1
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 7.1e-171 604.4 384 75.5
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 1.2e-170 603.6 386 74.9
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 1.2e-170 603.6 438 68.9
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 1.2e-170 603.6 365 78.6
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.6e-170 603.2 385 75.8
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 1.6e-170 603.2 437 68.0
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 2.1e-170 602.8 404 73.0
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 2.1e-170 602.8 386 75.1
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 2.1e-170 602.8 414 72.0
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 2.1e-170 602.8 427 70.3
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 2.1e-170 602.8 442 68.3
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.7e-170 602.4 388 74.5
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 2.7e-170 602.4 386 75.6
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 3.5e-170 602.1 385 75.8
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 3.5e-170 602.1 435 69.0
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 3.5e-170 602.1 443 69.3
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 4.6e-170 601.7 441 69.8
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 4.6e-170 601.7 387 75.7
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 4.6e-170 601.7 370 76.5
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 6.0e-170 601.3 445 68.1
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 7.8e-170 600.9 386 75.1
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 1.0e-169 600.5 435 69.0
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 1.0e-169 600.5 440 68.2
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 1.3e-169 600.1 360 78.3
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 1.3e-169 600.1 360 78.3
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 1.3e-169 600.1 447 67.3
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 2.3e-169 599.4 386 74.9
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 2.3e-169 599.4 387 73.4
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 3.0e-169 599.0 370 76.2
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 3.9e-169 598.6 389 73.0
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 5.1e-169 598.2 438 68.3
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 6.6e-169 597.8 433 68.8
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 6.6e-169 597.8 360 79.2
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 1.1e-168 597.0 429 67.8
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 1.1e-168 597.0 366 77.0
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 1.1e-168 597.0 371 76.3
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 2.5e-168 595.9 360 78.6
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 4.3e-168 595.1 442 67.9
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 2.8e-167 592.4 403 70.7
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 3.6e-167 592.0 389 72.2
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 3.6e-167 592.0 397 73.6
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 4.8e-167 591.7 383 75.7
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 4.8e-167 591.7 397 73.6
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 6.2e-167 591.3 401 70.6
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 6.2e-167 591.3 379 75.7
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 8.1e-167 590.9 393 72.3
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 1.4e-166 590.1 393 72.3
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 1.8e-166 589.7 435 67.4
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 1.8e-166 589.7 435 67.4
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 9.0e-166 587.4 393 70.2
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 9.0e-166 587.4 435 66.4
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 1.2e-165 587.0 438 65.5
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 2.0e-165 586.3 392 71.2
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 2.6e-165 585.9 363 78.5
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 3.4e-165 585.5 367 75.7
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 1.3e-164 583.6 388 70.1
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 1.3e-164 583.6 384 75.0
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 1.7e-164 583.2 387 71.6
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 4.9e-164 581.6 360 75.8
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 6.4e-164 581.3 371 75.2
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 6.4e-164 581.3 371 75.2
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 6.4e-164 581.3 364 76.1
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 1.4e-163 580.1 384 74.2
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 1.4e-163 580.1 423 67.6
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 2.7e-162 575.9 374 74.3
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 1.1e-160 570.5 370 74.1
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 2.8e-159 565.8 364 73.1
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 6.2e-159 564.7 385 70.6
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 8.1e-159 564.3 410 69.3
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 7.6e-157 557.8 329 80.5
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.3e-156 557.0 423 65.2
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 1.3e-156 557.0 373 72.1
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 8.4e-156 554.3 329 79.9
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 1.4e-155 553.5 374 69.0
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 4.2e-155 552.0 374 69.0
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 1.6e-154 550.1 329 78.7
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 1.0e-153 547.4 331 77.9
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 1.9e-152 543.1 404 65.8
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 1.4e-150 537.0 384 68.0
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 5.3e-150 535.0 384 68.5
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 7.6e-149 531.2 331 76.7
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 1.1e-134 484.2 429 60.8
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 6.9e-134 481.5 360 63.3
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 7.2e-131 471.5 386 60.1
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 8.0e-122 441.4 423 56.3
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.1e-120 437.6 311 69.5
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 6.3e-119 431.8 362 56.6
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 2.9e-116 422.9 445 54.2
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 1.2e-112 411.0 387 57.1
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 2.6e-96 356.7 391 51.9
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 1.7e-92 344.0 362 47.8
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 7.1e-78 295.4 256 63.7
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 1.2e-77 294.7 177 82.5
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 3.3e-75 286.6 245 63.3
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 1.3e-71 274.6 175 72.6
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 3.7e-71 273.1 152 85.5
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 3.2e-70 270.0 175 70.9
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 1.4e-65 254.6 260 56.2
A06p33750 Brassica napus HOM05D003687 ORTHO05D004571 3.4e-64 250.0 269 51.7
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.2e-61 241.5 250 52.8
MCO03G424 Micromonas commoda HOM05D003687 ORTHO05D049027 1.1e-59 235.0 365 35.3
CSS0005640 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 9.0e-57 225.3 188 62.8
PRCOL_00006694 Prasinoderma coloniale HOM05D003687 ORTHO05D049027 4.9e-55 219.5 323 37.8
Cfa023378 Carpinus fangiana HOM05D003687 ORTHO05D004571 1.1e-54 218.4 427 34.2
ATR0553G001 Amborella trichopoda HOM05D003687 ORTHO05D004571 3.2e-54 216.9 188 63.3
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 6.6e-52 209.1 175 65.1
QL06p053818 Quercus lobata HOM05D003687 ORTHO05D004571 7.6e-48 195.7 163 66.3
Dinv17413 Davidia involucrata HOM05D003687 ORTHO05D004571 1.3e-47 194.9 157 65.6
Dinv09926 Davidia involucrata HOM05D003687 ORTHO05D004571 4.9e-47 193.0 157 65.0
Dinv37828 Davidia involucrata HOM05D003687 ORTHO05D004571 1.2e-45 188.3 157 64.3
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 3.9e-44 183.3 152 64.5
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 3.3e-43 180.3 108 77.8
SalBow7G3504 Salvia bowleyana HOM05D003687 ORTHO05D004571 8.1e-42 175.6 298 39.9
RcHm_v2.0_Chr2g0097551 Rosa chinensis HOM05D003687 ORTHO05D004571 1.3e-39 168.3 150 56.7
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 2.9e-39 167.2 147 63.3
SEGI_08881 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 3.0e-36 157.1 295 36.9
Dinv34003 Davidia involucrata HOM05D003687 ORTHO05D004571 4.5e-32 143.3 83 80.7
ATR0763G123 Amborella trichopoda HOM05D003687 ORTHO05D004571 5.8e-32 142.9 99 68.7
RcHm_v2.0_Chr2g0097541 Rosa chinensis HOM05D003687 ORTHO05D004571 9.3e-30 135.6 125 58.4
SalBow6G6204 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.6e-29 134.8 78 78.2
ATR0749G088 Amborella trichopoda HOM05D003687 ORTHO05D004571 3.5e-29 133.7 162 44.4
SalBow7G4144 Salvia bowleyana HOM05D003687 ORTHO05D004571 7.9e-21 105.9 252 33.7
Dinv18127 Davidia involucrata HOM05D003687 ORTHO05D043272 3.9e-20 103.6 63 82.5
ATR0208G001 Amborella trichopoda HOM05D003687 ORTHO05D067511 4.3e-19 100.1 64 79.7
BraA06t26310Z Brassica rapa HOM05D003687 ORTHO05D043272 1.3e-18 98.6 65 83.1
SalBow6G6332 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.3e-18 98.6 129 43.4
SalBow6G4873 Salvia bowleyana HOM05D003687 ORTHO05D004571 6.9e-17 92.8 197 31.5
ATR0199G031 Amborella trichopoda HOM05D003687 ORTHO05D004571 7.7e-16 89.4 118 45.8
ATR0329G021 Amborella trichopoda HOM05D003687 ORTHO05D004571 3.8e-15 87.0 56 78.6
Psat6g182000 Pisum sativum HOM05D002062 ORTHO05D002242 1.1e-09 68.9 50 66.0
Psat3g043760 Pisum sativum HOM05D003687 ORTHO05D018418 5.9e-08 63.2 37 75.7
Sopen04g021110 Solanum pennellii HOM05D001565 ORTHO05D018129 1.0e-07 62.4 40 75.0
Solyc04g050430.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 1.7e-07 61.6 41 75.6
TAR371G0743 Trochodendron aralioides HOM05D003687 ORTHO05D006936 1.7e-07 61.6 61 52.5
Solyc04g150135.1 Solanum lycopersicum HOM05D001565 ORTHO05D001725 6.5e-07 59.7 49 59.2
Solyc04g050403.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 3.2e-06 57.4 38 76.3
BolC3t18117H Brassica oleracea HOM05D003687 ORTHO05D004571 5.5e-06 56.6 37 70.3


User provided reference genes

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