Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09522 Sequoiadendron giganteum HOM05D000874 ORTHO05D001267 5.7e-195 684.1 354 100.0
SEGI_24030 Sequoiadendron giganteum HOM05D000874 ORTHO05D001267 1.4e-28 131.3 365 35.6
ATR0177G003 Amborella trichopoda HOM05D000874 ORTHO05D001267 1.4e-23 114.8 153 41.8
TAR629G2997 Trochodendron aralioides HOM05D000874 ORTHO05D001267 2.9e-21 107.1 167 35.3
SEGI_15515 Sequoiadendron giganteum HOM05D000874 ORTHO05D001267 1.1e-20 105.1 275 36.4
Nn4g23458 Nelumbo nucifera HOM05D000874 ORTHO05D001267 7.1e-20 102.4 149 38.9
Sc12g0007060 Simmondsia chinensis HOM05D000874 ORTHO05D001267 9.2e-20 102.1 141 44.7
PGR083G2399 Punica granatum HOM05D000874 ORTHO05D001267 2.1e-19 100.9 123 44.7
TAR371G0581 Trochodendron aralioides HOM05D000874 ORTHO05D003941 2.7e-19 100.5 82 48.8
Sed0005310 Sechium edule HOM05D000874 ORTHO05D001267 7.8e-19 99.0 127 40.9
Aqoxy3G03671 Aquilegia oxysepala HOM05D000874 ORTHO05D001267 1.3e-18 98.2 149 39.6
AUR62021535 Chenopodium quinoa HOM05D000874 ORTHO05D001267 1.3e-18 98.2 160 37.5
CDE08G1099 Ceratophyllum demersum HOM05D000874 ORTHO05D001267 3.9e-18 96.7 129 38.8
Hma1.2p1_0060F.1_g032960 Hydrangea macrophylla HOM05D000874 ORTHO05D001267 3.9e-18 96.7 150 37.3
AUR62039650 Chenopodium quinoa HOM05D000874 ORTHO05D001267 8.7e-18 95.5 175 36.0
Cc00_g03520 Coffea canephora HOM05D000874 ORTHO05D001267 8.7e-18 95.5 123 42.3
ClCG06G015550 Citrullus lanatus HOM05D000874 ORTHO05D001267 3.3e-17 93.6 125 40.8
HPP92_007834 Vanilla planifolia HOM05D000874 ORTHO05D001267 4.3e-17 93.2 128 39.8
PSO339G4599 Papaver somniferum HOM05D000874 ORTHO05D001267 5.6e-17 92.8 130 40.8
CsaV3_1G003050 Cucumis sativus L. HOM05D000874 ORTHO05D001267 7.3e-17 92.4 68 54.4
Dinv17430 Davidia involucrata HOM05D000874 ORTHO05D001267 4.7e-16 89.7 128 39.8
Actinidia04813 Actinidia chinensis HOM05D000874 ORTHO05D001267 6.2e-16 89.4 126 36.5
Lj5P134T60 Lonicera japonica HOM05D000874 ORTHO05D001267 1.4e-15 88.2 158 36.1
HanXRQChr08g0230421 Helianthus annuus HOM05D000874 ORTHO05D001267 3.1e-15 87.0 70 51.4
MELO3C017235.2 Cucumis melo HOM05D000874 ORTHO05D001267 4.0e-15 86.7 125 40.8
Actinidia35043 Actinidia chinensis HOM05D000874 ORTHO05D001267 1.5e-14 84.7 59 55.9
Pp3c4_15980 Physcomitrium patens HOM05D000874 ORTHO05D001267 1.5e-14 84.7 219 37.0
Cpa.g.sc94.72 Carica papaya HOM05D000874 ORTHO05D001267 2.0e-14 84.3 144 34.0
Gorai.003G101900 Gossypium raimondii HOM05D000874 ORTHO05D001267 2.6e-14 84.0 133 32.3
Pp3c12_4860 Physcomitrium patens HOM05D000874 ORTHO05D001267 2.6e-14 84.0 232 32.8
QL10p019931 Quercus lobata HOM05D000874 ORTHO05D001267 2.6e-14 84.0 121 38.0
Eucgr.B00614 Eucalyptus grandis HOM05D000874 ORTHO05D001267 3.4e-14 83.6 320 29.4
Prupe.5G206700 Prunus persica HOM05D000874 ORTHO05D001267 3.4e-14 83.6 174 27.6
Thecc.03G104300 Theobroma cacao HOM05D000874 ORTHO05D001267 3.4e-14 83.6 142 31.7
Gohir.A03G070700 Gossypium hirsutum HOM05D000874 ORTHO05D001267 5.8e-14 82.8 133 33.1
Lsat_1_v5_gn_5_23020 Lactuca sativa HOM05D000874 ORTHO05D001267 1.3e-13 81.6 66 51.5
PSO648G0103 Papaver somniferum HOM05D000874 ORTHO05D001267 2.2e-13 80.9 135 37.0
TWI60G0966 Tripterygium wilfordii HOM05D000874 ORTHO05D001267 4.9e-13 79.7 143 33.6
TWI60G1583 Tripterygium wilfordii HOM05D000874 ORTHO05D001267 4.9e-13 79.7 143 33.6
EL10Ac5g11157 Beta vulgaris HOM05D000874 ORTHO05D001267 8.4e-13 79.0 295 32.5
CiPaw.11G055400 Carya illinoinensis HOM05D000874 ORTHO05D001267 8.4e-13 79.0 126 38.1
Nn3g17475 Nelumbo nucifera HOM05D000874 ORTHO05D001267 1.9e-12 77.8 69 47.8
Lj1g0025338 Lotus japonicus HOM05D000874 ORTHO05D001267 3.2e-12 77.0 137 32.8
ECA246G3190 Erigeron canadensis HOM05D000874 ORTHO05D001267 4.2e-12 76.6 309 27.5
Rhsim08G0144400 Rhododendron simsii HOM05D000874 ORTHO05D001267 7.1e-12 75.9 245 33.5
Atru.chr9.525 Acer truncatum HOM05D000874 ORTHO05D001267 1.7e-10 71.2 75 40.0
Manes.06G083000 Manihot esculenta HOM05D000874 ORTHO05D001267 1.7e-10 71.2 269 30.5
CBR_g37879 Chara braunii HOM05D000874 ORTHO05D001267 5.1e-10 69.7 311 31.2
Glyma.06G204600 Glycine max HOM05D000874 ORTHO05D001267 8.7e-10 68.9 132 31.1
SMO353G0398 Selaginella moellendorffii HOM05D000874 ORTHO05D001267 8.7e-10 68.9 135 37.0
Glyma.04G160800 Glycine max HOM05D000874 ORTHO05D001267 3.3e-09 67.0 132 32.6
Phvul.009G202700 Phaseolus vulgaris HOM05D000874 ORTHO05D001267 4.3e-09 66.6 132 32.6
Ciclev10018493m.g Citrus clementina HOM05D000874 ORTHO05D001267 5.6e-09 66.2 346 26.3
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 5.6e-09 66.2 96 40.6
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 5.6e-09 66.2 94 42.6
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 7.3e-09 65.9 83 45.8
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.6e-08 64.7 107 40.2
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 2.1e-08 64.3 96 39.6
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 2.1e-08 64.3 112 39.3
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 2.1e-08 64.3 93 45.2
VMungo1309G0947 Vigna mungo HOM05D000874 ORTHO05D001267 2.1e-08 64.3 119 32.8
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 2.8e-08 63.9 82 43.9
arahy.Tifrunner.gnm1.ann1.GR9NQC Arachis hypogaea HOM05D000874 ORTHO05D001267 6.2e-08 62.8 127 30.7
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 6.2e-08 62.8 117 39.3
arahy.Tifrunner.gnm1.ann1.A58RJ7 Arachis hypogaea HOM05D000874 ORTHO05D001267 8.1e-08 62.4 127 30.7
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 8.1e-08 62.4 119 40.3
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 1.1e-07 62.0 95 40.0
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.1e-07 62.0 84 41.7
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 1.1e-07 62.0 99 40.4
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 1.4e-07 61.6 101 38.6
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 1.8e-07 61.2 91 41.8
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 1.8e-07 61.2 133 37.6
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 1.8e-07 61.2 94 40.4
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 4.0e-07 60.1 94 40.4
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 5.3e-07 59.7 75 42.7
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 5.3e-07 59.7 75 42.7
vmacro16488 Vaccinium macrocarpon HOM05D000874 ORTHO05D001267 5.3e-07 59.7 299 29.1
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 9.0e-07 58.9 59 45.8
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 9.0e-07 58.9 89 38.2
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 9.0e-07 58.9 108 38.9
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 9.0e-07 58.9 67 46.3
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 9.0e-07 58.9 84 41.7
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 1.2e-06 58.5 91 39.6
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.2e-06 58.5 66 45.5
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 1.2e-06 58.5 71 43.7
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 1.2e-06 58.5 110 40.0
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 1.5e-06 58.2 141 36.9
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 1.5e-06 58.2 57 47.4
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 2.0e-06 57.8 125 32.8
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 2.0e-06 57.8 63 47.6
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 2.0e-06 57.8 57 49.1
PRCOL_00003511 Prasinoderma coloniale HOM05D005511 ORTHO05D006616 2.0e-06 57.8 91 40.7
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 2.6e-06 57.4 59 45.8
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 2.6e-06 57.4 77 40.3
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 3.4e-06 57.0 64 43.8
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 3.4e-06 57.0 64 43.8
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 3.4e-06 57.0 59 45.8
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 3.4e-06 57.0 59 45.8
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 3.4e-06 57.0 59 45.8
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 3.4e-06 57.0 59 45.8
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 3.4e-06 57.0 84 41.7
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.4e-06 57.0 55 45.5
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.4e-06 57.0 55 45.5
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 3.4e-06 57.0 65 47.7
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 3.4e-06 57.0 127 31.5
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 3.4e-06 57.0 84 41.7
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 3.4e-06 57.0 57 47.4
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 4.5e-06 56.6 80 41.2
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 4.5e-06 56.6 55 49.1
Manes.14G086800 Manihot esculenta HOM05D000874 ORTHO05D001267 4.5e-06 56.6 300 28.3
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 4.5e-06 56.6 57 47.4
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 4.5e-06 56.6 65 46.2
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 4.5e-06 56.6 66 40.9
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 5.8e-06 56.2 116 36.2
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 7.6e-06 55.8 107 35.5
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 7.6e-06 55.8 79 40.5
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 7.6e-06 55.8 52 50.0
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 7.6e-06 55.8 57 47.4
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 9.9e-06 55.5 59 42.4
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 9.9e-06 55.5 149 34.2


User provided reference genes

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