Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 1.1e-202 709.9 369 100.0
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 2.3e-104 383.3 304 65.5
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 5.1e-99 365.5 312 60.9
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 2.2e-94 350.1 287 62.7
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 1.4e-93 347.4 287 61.3
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 1.4e-93 347.4 287 61.3
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 1.3e-91 340.9 291 61.2
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 1.7e-91 340.5 292 59.9
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 3.9e-91 339.3 295 59.3
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 6.6e-91 338.6 290 61.0
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 8.6e-91 338.2 290 59.3
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 4.3e-90 335.9 290 60.3
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 1.2e-89 334.3 312 57.4
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 1.6e-89 334.0 291 60.5
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 2.8e-89 333.2 290 58.6
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 2.8e-89 333.2 290 59.7
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 6.2e-89 332.0 290 57.9
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 2.4e-88 330.1 292 58.2
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 4.0e-88 329.3 289 59.9
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 5.2e-88 328.9 290 57.2
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 8.9e-88 328.2 291 59.5
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 8.9e-88 328.2 291 59.5
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.2e-87 327.8 288 59.7
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 1.5e-87 327.4 289 58.8
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 4.4e-87 325.9 279 59.1
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 9.9e-87 324.7 290 57.2
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 9.9e-87 324.7 290 58.6
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.3e-86 324.3 290 58.3
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 1.7e-86 323.9 291 59.1
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 1.7e-86 323.9 290 58.3
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 2.9e-86 323.2 288 58.3
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 2.9e-86 323.2 287 59.2
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 4.9e-86 322.4 288 58.7
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 8.4e-86 321.6 288 58.0
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 1.1e-85 321.2 290 57.6
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.4e-85 320.9 290 57.6
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 9.3e-85 318.2 291 59.1
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 2.1e-84 317.0 290 57.6
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 3.5e-84 316.2 290 57.2
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 3.5e-84 316.2 290 56.9
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 1.0e-83 314.7 290 55.9
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 1.7e-83 313.9 288 56.9
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 2.3e-83 313.5 291 56.7
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 2.3e-83 313.5 292 57.5
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 6.6e-83 312.0 291 56.4
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 1.1e-82 311.2 290 56.9
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 1.1e-82 311.2 290 53.4
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.5e-82 310.8 290 52.8
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 3.3e-82 309.7 290 54.5
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 4.3e-82 309.3 288 57.6
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 1.3e-81 307.8 290 57.2
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.6e-81 307.4 291 56.4
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 2.1e-81 307.0 291 56.0
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 2.1e-81 307.0 237 65.4
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 2.8e-81 306.6 290 56.6
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 2.8e-81 306.6 312 52.6
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 3.6e-81 306.2 290 55.9
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 1.1e-80 304.7 295 55.6
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 1.1e-80 304.7 290 55.9
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 1.1e-80 304.7 287 55.4
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 1.8e-80 303.9 287 56.1
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 2.4e-80 303.5 286 54.9
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 3.1e-80 303.1 292 55.5
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 5.3e-80 302.4 294 55.4
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 6.9e-80 302.0 290 54.5
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 9.0e-80 301.6 290 54.5
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 1.2e-79 301.2 293 54.3
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 1.2e-79 301.2 273 56.0
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 1.2e-79 301.2 290 56.2
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.5e-79 300.8 290 53.4
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 1.5e-79 300.8 287 55.7
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 2.6e-79 300.1 290 54.1
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 3.4e-79 299.7 290 53.4
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 5.8e-79 298.9 287 54.0
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 9.9e-79 298.1 290 53.4
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 9.9e-79 298.1 290 54.1
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 6.4e-78 295.4 275 57.1
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 8.4e-78 295.0 312 51.3
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 8.4e-78 295.0 312 52.6
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 1.4e-77 294.3 296 54.1
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.9e-77 293.9 290 53.1
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 3.2e-77 293.1 279 56.3
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.6e-76 290.8 280 55.4
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 2.7e-76 290.0 287 55.1
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 6.0e-76 288.9 287 55.1
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 1.0e-75 288.1 290 53.4
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 1.0e-75 288.1 291 53.3
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 1.3e-75 287.7 279 55.6
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 1.3e-75 287.7 279 55.9
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 1.7e-75 287.3 279 55.6
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 1.7e-75 287.3 279 55.6
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 2.3e-75 287.0 279 55.6
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 6.6e-75 285.4 279 55.6
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 6.6e-75 285.4 279 55.6
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 6.6e-75 285.4 279 55.6
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 6.6e-75 285.4 280 54.3
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 8.7e-75 285.0 280 55.0
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 1.5e-74 284.3 279 54.5
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 1.9e-74 283.9 279 55.2
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 1.9e-74 283.9 279 54.1
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 3.3e-74 283.1 279 55.2
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 3.3e-74 283.1 279 55.2
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 3.3e-74 283.1 279 55.2
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 1.3e-73 281.2 316 48.1
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.6e-73 280.8 290 50.7
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 6.2e-73 278.9 279 54.1
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 6.2e-73 278.9 279 54.5
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 8.1e-73 278.5 279 54.5
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 1.8e-72 277.3 286 51.0
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 2.4e-72 276.9 280 55.4
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 3.1e-72 276.6 279 53.0
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 3.1e-72 276.6 291 51.9
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 2.6e-71 273.5 277 53.1
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 3.4e-71 273.1 277 53.1
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 9.9e-71 271.6 284 54.2
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 3.8e-70 269.6 287 51.6
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 7.1e-69 265.4 314 47.5
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 7.9e-68 261.9 287 54.0
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 4.0e-64 249.6 218 57.3
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 3.0e-51 206.8 290 42.4
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 3.1e-48 196.8 188 52.7
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 2.2e-46 190.7 188 51.6
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 1.5e-42 177.9 158 57.6
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 2.2e-41 174.1 161 55.3
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 1.2e-39 168.3 219 47.0
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 8.8e-35 152.1 344 35.5
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 5.7e-34 149.4 192 46.9
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 5.7e-26 122.9 106 56.6
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 3.6e-20 103.6 113 46.0
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 7.5e-18 95.9 101 53.5
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 5.4e-16 89.7 76 53.9
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 5.9e-15 86.3 66 63.6
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 3.2e-13 80.5 68 55.9
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 4.2e-13 80.1 74 58.1
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 7.2e-13 79.3 98 48.0
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 2.0e-10 71.2 75 50.7
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 2.2e-09 67.8 52 53.8
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 3.7e-09 67.0 74 50.0
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 2.4e-08 64.3 154 33.1


User provided reference genes

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