Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 2.0e-52 208.8 101 100.0
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 2.4e-29 132.1 85 68.2
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.4e-26 122.9 89 64.0
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 9.4e-26 120.2 89 62.9
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 3.6e-25 118.2 97 59.8
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 3.6e-25 118.2 95 61.1
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 1.0e-24 116.7 74 71.6
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.4e-24 116.3 88 61.4
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 1.4e-24 116.3 83 63.9
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 1.4e-24 116.3 83 63.9
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 2.3e-24 115.5 80 63.8
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 2.3e-24 115.5 95 58.9
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 3.0e-24 115.2 73 72.6
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 3.0e-24 115.2 84 65.5
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 3.9e-24 114.8 74 70.3
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 3.9e-24 114.8 94 59.6
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 5.1e-24 114.4 82 65.9
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 5.1e-24 114.4 92 60.9
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 5.1e-24 114.4 93 59.1
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 5.1e-24 114.4 89 61.8
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 6.7e-24 114.0 100 60.0
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 8.8e-24 113.6 77 70.1
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 1.1e-23 113.2 74 68.9
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 1.1e-23 113.2 93 57.0
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 1.1e-23 113.2 83 61.4
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.5e-23 112.8 68 72.1
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.5e-23 112.8 68 72.1
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 1.5e-23 112.8 83 61.4
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 1.5e-23 112.8 73 67.1
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 2.0e-23 112.5 74 66.2
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 2.0e-23 112.5 78 65.4
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.0e-23 112.5 83 60.2
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.0e-23 112.5 102 54.9
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 2.0e-23 112.5 76 65.8
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 3.3e-23 111.7 67 73.1
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 3.3e-23 111.7 96 58.3
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.3e-23 111.7 83 60.2
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.3e-23 111.7 80 66.2
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 3.3e-23 111.7 74 67.6
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 4.3e-23 111.3 96 55.2
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 4.3e-23 111.3 74 67.6
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 4.3e-23 111.3 82 62.2
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 4.3e-23 111.3 74 68.9
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 4.3e-23 111.3 88 56.8
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 4.3e-23 111.3 74 68.9
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 4.3e-23 111.3 77 66.2
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 5.7e-23 110.9 68 70.6
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 5.7e-23 110.9 91 58.2
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 5.7e-23 110.9 99 53.5
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 5.7e-23 110.9 96 57.3
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 5.7e-23 110.9 74 67.6
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 5.7e-23 110.9 74 66.2
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 7.4e-23 110.5 82 61.0
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 7.4e-23 110.5 84 63.1
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 7.4e-23 110.5 83 61.4
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.4e-23 110.5 83 59.0
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 7.4e-23 110.5 83 60.2
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 7.4e-23 110.5 76 67.1
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 9.7e-23 110.2 74 68.9
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 9.7e-23 110.2 76 64.5
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.3e-22 109.8 78 64.1
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 1.3e-22 109.8 69 71.0
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 1.7e-22 109.4 83 61.4
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.7e-22 109.4 67 71.6
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 2.2e-22 109.0 94 57.4
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 2.2e-22 109.0 76 65.8
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 2.2e-22 109.0 88 55.7
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.8e-22 108.6 84 59.5
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.8e-22 108.6 83 59.0
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 3.7e-22 108.2 77 63.6
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 3.7e-22 108.2 62 77.4
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 4.8e-22 107.8 74 63.5
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 4.8e-22 107.8 74 63.5
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 6.3e-22 107.5 95 56.8
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 6.3e-22 107.5 77 62.3
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 8.2e-22 107.1 66 68.2
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 1.1e-21 106.7 66 68.2
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.1e-21 106.7 67 67.2
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 1.1e-21 106.7 76 67.1
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 1.1e-21 106.7 83 61.4
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 1.1e-21 106.7 77 67.5
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.4e-21 106.3 64 73.4
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.4e-21 106.3 74 62.2
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.4e-21 106.3 76 61.8
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.4e-21 106.3 79 60.8
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 2.4e-21 105.5 71 64.8
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 2.4e-21 105.5 92 57.6
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 3.1e-21 105.1 64 71.9
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 3.1e-21 105.1 64 71.9
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 3.1e-21 105.1 85 58.8
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 4.1e-21 104.8 100 52.0
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 4.1e-21 104.8 77 64.9
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 4.1e-21 104.8 91 54.9
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 4.1e-21 104.8 78 60.3
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.1e-21 104.8 79 59.5
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 5.3e-21 104.4 76 63.2
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 5.3e-21 104.4 67 70.1
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 5.3e-21 104.4 88 55.7
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 5.3e-21 104.4 86 60.5
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 1.2e-20 103.2 71 66.2
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 1.2e-20 103.2 78 61.5
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.5e-20 102.8 94 53.2
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.0e-20 102.4 94 51.1
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 3.4e-20 101.7 69 66.7
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 3.4e-20 101.7 89 55.1
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 3.4e-20 101.7 76 57.9
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 3.4e-20 101.7 76 60.5
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 3.4e-20 101.7 104 49.0
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 5.9e-20 100.9 90 57.8
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 5.9e-20 100.9 87 58.6
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 5.9e-20 100.9 90 57.8
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 5.9e-20 100.9 87 58.6
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 5.9e-20 100.9 95 52.6
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 5.9e-20 100.9 80 61.2
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 7.7e-20 100.5 69 65.2
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 7.7e-20 100.5 68 67.6
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 7.7e-20 100.5 94 53.2
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 1.7e-19 99.4 88 54.5
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 2.2e-19 99.0 79 58.2
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 3.8e-19 98.2 66 66.7
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 3.8e-19 98.2 66 66.7
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 3.8e-19 98.2 67 65.7
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 6.5e-19 97.4 69 63.8
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 8.5e-19 97.1 74 60.8
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.1e-18 96.7 74 58.1
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 1.4e-18 96.3 79 58.2
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 1.9e-18 95.9 86 53.5
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.9e-18 95.9 85 58.8
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 2.5e-18 95.5 75 58.7
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 2.5e-18 95.5 73 57.5
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 9.4e-18 93.6 64 67.2
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 9.4e-18 93.6 64 65.6
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 9.4e-18 93.6 64 65.6
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 1.2e-17 93.2 83 51.8
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 1.6e-17 92.8 56 71.4
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 3.6e-17 91.7 67 61.2
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 3.6e-17 91.7 68 58.8
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 3.6e-17 91.7 79 54.4
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 4.7e-17 91.3 62 64.5
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 3.0e-16 88.6 81 54.3
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 5.1e-16 87.8 87 47.1
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.1e-15 86.7 65 63.1
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.5e-15 86.3 61 63.9
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 2.0e-15 85.9 92 46.7
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 2.6e-15 85.5 71 54.9
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 5.7e-15 84.3 61 62.3
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 2.8e-14 82.0 60 63.3
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 8.2e-14 80.5 66 56.1
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 2.6e-12 75.5 60 55.0
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 3.5e-12 75.1 62 58.1
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.5e-12 75.1 55 61.8
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.5e-10 69.7 115 34.8
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 7.2e-10 67.4 60 53.3
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 3.0e-08 62.0 38 73.7
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 2.8e-06 55.5 44 54.5
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 3.7e-06 55.1 52 51.9


User provided reference genes

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