Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09155 Sequoiadendron giganteum HOM05D000001 ORTHO05D385389 3.8e-48 194.5 99 100.0
SEGI_16089 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 2.2e-11 72.4 90 36.7
AagrBONN_evm.TU.Sc2ySwM_362.1775 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.4e-11 70.9 80 42.5
SEGI_23369 Sequoiadendron giganteum HOM05D000001 ORTHO05D384046 1.9e-10 69.3 74 44.6
SEGI_01530 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 3.2e-10 68.6 72 45.8
SEGI_05004 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 3.2e-10 68.6 77 44.2
SEGI_34773 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 7.1e-10 67.4 95 41.1
SEGI_23987 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 1.6e-09 66.2 101 32.7
SEGI_37731 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 2.1e-09 65.9 76 38.2
GSVIVG01024061001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.5e-09 65.1 75 41.3
Cfa008097 Carpinus fangiana HOM05D000001 ORTHO05D009433 4.6e-09 64.7 82 37.8
Haze_13939 Corylus avellana HOM05D000001 ORTHO05D009433 4.6e-09 64.7 82 37.8
PGR042G1628 Punica granatum HOM05D000001 ORTHO05D009433 6.0e-09 64.3 83 36.1
Gohir.D12G089800 Gossypium hirsutum HOM05D000001 ORTHO05D009545 1.3e-08 63.2 75 38.7
Gorai.008G073100 Gossypium raimondii HOM05D000001 ORTHO05D009545 1.3e-08 63.2 75 38.7
Thecc.01G050300 Theobroma cacao HOM05D000001 ORTHO05D009545 1.3e-08 63.2 89 39.3
TAR376G0976 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.3e-08 63.2 74 40.5
VMungo1383G0199 Vigna mungo HOM05D000001 ORTHO05D009433 1.3e-08 63.2 75 37.3
Glyma.09G244300 Glycine max HOM05D000001 ORTHO05D009433 1.7e-08 62.8 75 38.7
Gohir.A12G069400 Gossypium hirsutum HOM05D000001 ORTHO05D009545 1.7e-08 62.8 75 38.7
QL09p003653 Quercus lobata HOM05D000001 ORTHO05D009433 1.7e-08 62.8 82 36.6
MSTRG.3410 Avicennia marina HOM05D000001 ORTHO05D009545 5.1e-08 61.2 81 30.9
Ciclev10024955m.g Citrus clementina HOM05D000001 ORTHO05D009545 5.1e-08 61.2 95 35.8
SEGI_05069 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 5.1e-08 61.2 78 41.0
Duzib147G1709 Durio zibethinus HOM05D000001 ORTHO05D009545 6.6e-08 60.8 89 36.0
Migut.K00830 Erythranthe guttata HOM05D000001 ORTHO05D009545 6.6e-08 60.8 96 29.2
MBI10_g00721_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009545 6.6e-08 60.8 85 34.1
Nn2g13998 Nelumbo nucifera HOM05D000001 ORTHO05D009545 6.6e-08 60.8 95 32.6
PSO675G0134 Papaver somniferum HOM05D000001 ORTHO05D000003 6.6e-08 60.8 97 29.9
Actinidia03522 Actinidia chinensis HOM05D000001 ORTHO05D009433 8.6e-08 60.5 82 32.9
Phvul.008G048400 Phaseolus vulgaris HOM05D000001 ORTHO05D009433 8.6e-08 60.5 75 34.7
Psat7g259960 Pisum sativum HOM05D000001 ORTHO05D009433 8.6e-08 60.5 82 37.8
QL08p018723 Quercus lobata HOM05D000001 ORTHO05D009545 8.6e-08 60.5 87 33.3
QL93p2023_0108 Quercus lobata HOM05D000001 ORTHO05D009545 8.6e-08 60.5 87 33.3
Rhsim11G0181400 Rhododendron simsii HOM05D000001 ORTHO05D009545 1.1e-07 60.1 81 37.0
SEGI_20427 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 1.1e-07 60.1 97 34.0
Lalb_Chr19g0126351 Lupinus albus HOM05D000001 ORTHO05D009433 1.5e-07 59.7 82 34.1
Sc07g0000100 Simmondsia chinensis HOM05D000001 ORTHO05D009545 1.5e-07 59.7 82 31.7
TPR.G38740 Trifolium pratense HOM05D000001 ORTHO05D009433 1.5e-07 59.7 82 36.6
TWI09G1516 Tripterygium wilfordii HOM05D000001 ORTHO05D009545 1.5e-07 59.7 84 38.1
AagrBONN_evm.TU.Sc2ySwM_362.237 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.9e-07 59.3 83 31.3
Solyc07g052590.1 Solanum lycopersicum HOM05D000001 ORTHO05D009433 1.9e-07 59.3 82 34.1
Sopen07g026200 Solanum pennellii HOM05D000001 ORTHO05D009433 1.9e-07 59.3 82 34.1
SEGI_01807 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 2.5e-07 58.9 77 37.7
TWI18G1345 Tripterygium wilfordii HOM05D000001 ORTHO05D009433 2.5e-07 58.9 82 35.4
Duzib177G0902 Durio zibethinus HOM05D000001 ORTHO05D009433 3.3e-07 58.5 82 34.1
Lj1g0014626 Lotus japonicus HOM05D000001 ORTHO05D009433 3.3e-07 58.5 75 33.3
Lalb_Chr05g0211401 Lupinus albus HOM05D000001 ORTHO05D009545 3.3e-07 58.5 71 36.6
Manes.02G207833 Manihot esculenta HOM05D000001 ORTHO05D009433 3.3e-07 58.5 82 32.9
Sabra19G0085700 Salix brachista HOM05D000001 ORTHO05D009433 3.3e-07 58.5 82 34.1
SEGI_13400 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 3.3e-07 58.5 100 37.0
Thecc.K0003000 Theobroma cacao HOM05D000001 ORTHO05D009433 3.3e-07 58.5 82 31.7
AT4G37170 Arabidopsis thaliana HOM05D000001 ORTHO05D009545 4.3e-07 58.2 83 37.3
MBI06_g15764_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 4.3e-07 58.2 78 38.5
SEGI_15874 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 4.3e-07 58.2 99 36.4
AagrBONN_evm.TU.Sc2ySwM_117.1520 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.6e-07 57.8 75 34.7
arahy.Tifrunner.gnm1.ann1.DZGM7B Arachis hypogaea HOM05D000001 ORTHO05D009433 5.6e-07 57.8 82 32.9
Prupe.7G139900 Prunus persica HOM05D000001 ORTHO05D009545 5.6e-07 57.8 95 31.6
SEGI_16813 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 5.6e-07 57.8 87 31.0
SEGI_37002 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 5.6e-07 57.8 75 30.7
SEGI_40970 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 5.6e-07 57.8 81 35.8
Atru.chr13.2447 Acer truncatum HOM05D000001 ORTHO05D009433 7.3e-07 57.4 82 32.9
AL7G13950 Arabidopsis lyrata HOM05D000001 ORTHO05D009545 7.3e-07 57.4 83 36.1
BcaNung03512 Brassica carinata HOM05D000201 ORTHO05D009545 7.3e-07 57.4 97 33.0
C01p02150 Brassica napus HOM05D000001 ORTHO05D009545 7.3e-07 57.4 97 33.0
BolC1t00207H Brassica oleracea HOM05D000001 ORTHO05D009545 7.3e-07 57.4 97 33.0
Cfa003968 Carpinus fangiana HOM05D000001 ORTHO05D009545 7.3e-07 57.4 96 32.3
CiPaw.02G010800 Carya illinoinensis HOM05D000001 ORTHO05D009545 7.3e-07 57.4 108 29.6
DCAR_012958 Daucus carota HOM05D000001 ORTHO05D009433 7.3e-07 57.4 82 34.1
Migut.D00872 Erythranthe guttata HOM05D000001 ORTHO05D000003 7.3e-07 57.4 90 33.3
MBI16_g31341_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D001705 7.3e-07 57.4 76 32.9
Rhsim02G0173600 Rhododendron simsii HOM05D000001 ORTHO05D009433 7.3e-07 57.4 82 34.1
SEGI_08342 Sequoiadendron giganteum HOM05D000001 ORTHO05D038390 7.3e-07 57.4 98 34.7
THA.LOC104811619 Tarenaya hassleriana HOM05D000001 ORTHO05D009433 7.3e-07 57.4 82 31.7
Ah.02g124100 Amaranthus hybridus HOM05D000001 ORTHO05D009545 9.5e-07 57.0 94 33.0
ATR0618G220 Amborella trichopoda HOM05D000001 ORTHO05D000003 9.5e-07 57.0 75 32.0
AagrBONN_evm.TU.Sc2ySwM_228.3876 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.5e-07 57.0 99 32.3
ClCG07G015160 Citrullus lanatus HOM05D000001 ORTHO05D009545 9.5e-07 57.0 82 35.4
Medtr4g006900 Medicago truncatula HOM05D000001 ORTHO05D009433 9.5e-07 57.0 82 34.1
Pp3c27_5540 Physcomitrium patens HOM05D000001 ORTHO05D000003 9.5e-07 57.0 79 32.9
SEGI_00123 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 9.5e-07 57.0 59 50.8
SGA_v2.0_scaffold114G31953 Striga asiatica HOM05D000001 ORTHO05D009545 9.5e-07 57.0 81 33.3
Aqoxy1G00818 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 1.2e-06 56.6 77 35.1
CAN.G921.7 Capsicum annuum HOM05D000001 ORTHO05D009433 1.2e-06 56.6 82 34.1
Lj1P756T28 Lonicera japonica HOM05D000001 ORTHO05D009433 1.2e-06 56.6 82 34.1
MBI19_g00154_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.2e-06 56.6 75 38.7
Phvul.002G199400 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 1.2e-06 56.6 71 38.0
Potri.019G075400 Populus trichocarpa HOM05D000001 ORTHO05D009433 1.2e-06 56.6 82 32.9
AagrBONN_evm.TU.Sc2ySwM_228.1934 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 56.2 80 38.8
A01p01980 Brassica napus HOM05D000001 ORTHO05D009545 1.6e-06 56.2 97 34.0
BraA01t00186Z Brassica rapa HOM05D000201 ORTHO05D000490 1.6e-06 56.2 97 34.0
COL.COLO4_24586 Corchorus olitorius HOM05D000001 ORTHO05D009433 1.6e-06 56.2 82 31.7
Glyma.19G179200 Glycine max HOM05D000001 ORTHO05D000003 1.6e-06 56.2 91 30.8
Lj4g0013919 Lotus japonicus HOM05D000001 ORTHO05D000003 1.6e-06 56.2 75 36.0
MD15G1276800 Malus domestica HOM05D000001 ORTHO05D009545 1.6e-06 56.2 108 30.6
Nitab4.5_0005894g0030 Nicotiana tabacum HOM05D001891 ORTHO05D009433 1.6e-06 56.2 82 34.1
Sp1g27640 Schrenkiella parvula HOM05D000001 ORTHO05D000003 1.6e-06 56.2 77 33.8
SEGI_19770 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 1.6e-06 56.2 74 36.5
THA.LOC104798507 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 1.6e-06 56.2 77 32.5
ATR0782G038 Amborella trichopoda HOM05D000001 ORTHO05D000003 2.1e-06 55.8 78 33.3
BcaNung03513 Brassica carinata HOM05D000001 ORTHO05D009545 2.1e-06 55.8 83 36.1
CSS0008644 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009433 2.1e-06 55.8 82 31.7
CSS0032847 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009433 2.1e-06 55.8 82 31.7
ClCG08G001080 Citrullus lanatus HOM05D000001 ORTHO05D009433 2.1e-06 55.8 82 30.5
Migut.B00763 Erythranthe guttata HOM05D000001 ORTHO05D009433 2.1e-06 55.8 82 34.1
Lj5C111T13 Lonicera japonica HOM05D000001 ORTHO05D013776 2.1e-06 55.8 77 33.8
Prupe.2G122200 Prunus persica HOM05D000001 ORTHO05D009433 2.1e-06 55.8 82 31.7
RcHm_v2.0_Chr2g0104091 Rosa chinensis HOM05D000001 ORTHO05D009545 2.1e-06 55.8 81 34.6
Sed0019825 Sechium edule HOM05D000001 ORTHO05D009433 2.1e-06 55.8 82 30.5
SEGI_05147 Sequoiadendron giganteum HOM05D000001 ORTHO05D001705 2.1e-06 55.8 71 38.0
TAR626G1702 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.1e-06 55.8 61 41.0
MSTRG.16487 Avicennia marina HOM05D000001 ORTHO05D009433 2.8e-06 55.5 82 31.7
Cpa.g.sc21.68 Carica papaya HOM05D000001 ORTHO05D009433 2.8e-06 55.5 75 32.0
Cfa003966 Carpinus fangiana HOM05D000001 ORTHO05D009545 2.8e-06 55.5 96 31.2
Thhalv10026762m.g Eutrema salsugineum HOM05D000001 ORTHO05D009545 2.8e-06 55.5 83 32.5
Nn6g34845 Nelumbo nucifera HOM05D000001 ORTHO05D000003 2.8e-06 55.5 73 39.7
Nitab4.5_0000366g0210 Nicotiana tabacum HOM05D000001 ORTHO05D009545 2.8e-06 55.5 109 30.3
PGSC0003DMG400026172 Solanum tuberosum HOM05D000001 ORTHO05D009433 2.8e-06 55.5 82 32.9
TAR381G0345 Trochodendron aralioides HOM05D000001 ORTHO05D009545 2.8e-06 55.5 95 30.5
Aa31LG6G13830 Aethionema arabicum HOM05D000001 ORTHO05D009545 3.6e-06 55.1 83 33.7
CARHR245340 Cardamine hirsuta HOM05D000001 ORTHO05D009545 3.6e-06 55.1 84 33.3
CiPaw.04G010200 Carya illinoinensis HOM05D000001 ORTHO05D009433 3.6e-06 55.1 83 32.5
Nitab4.5_0011457g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009545 3.6e-06 55.1 107 29.9
PGSC0003DMG400000068 Solanum tuberosum HOM05D000001 ORTHO05D009545 3.6e-06 55.1 106 30.2
PGSC0003DMG400008304 Solanum tuberosum HOM05D000001 ORTHO05D000003 3.6e-06 55.1 74 37.8
GSVIVG01023860001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.6e-06 55.1 76 34.2
CiPaw.05G094400 Carya illinoinensis HOM05D000001 ORTHO05D000003 4.7e-06 54.7 76 35.5
Ca_18300_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 4.7e-06 54.7 71 38.0
Dinv30177 Davidia involucrata HOM05D000001 ORTHO05D001705 4.7e-06 54.7 75 33.3
Lalb_Chr18g0054691 Lupinus albus HOM05D000001 ORTHO05D000003 4.7e-06 54.7 98 36.7
Nn4g25051 Nelumbo nucifera HOM05D000001 ORTHO05D009433 4.7e-06 54.7 75 33.3
SMO288G0015 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 4.7e-06 54.7 77 35.1
Solyc02g070710.3 Solanum lycopersicum HOM05D000001 ORTHO05D000003 4.7e-06 54.7 74 37.8
Sopen02g019790 Solanum pennellii HOM05D000001 ORTHO05D000003 4.7e-06 54.7 74 37.8
VMungo0720G1545 Vigna mungo HOM05D000001 ORTHO05D000003 4.7e-06 54.7 98 34.7
ATR0012G039 Amborella trichopoda HOM05D000001 ORTHO05D000003 6.2e-06 54.3 79 38.0
Ca_08374_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 6.2e-06 54.3 80 31.2
Ciclev10028001m.g Citrus clementina HOM05D000001 ORTHO05D000003 6.2e-06 54.3 97 29.9
CsaV3_5G039930 Cucumis sativus L. HOM05D000001 ORTHO05D009433 6.2e-06 54.3 82 29.3
Glyma.05G125500 Glycine max HOM05D000001 ORTHO05D000003 6.2e-06 54.3 71 36.6
Gohir.D05G255000 Gossypium hirsutum HOM05D000001 ORTHO05D009433 6.2e-06 54.3 82 31.7
Gorai.009G266500 Gossypium raimondii HOM05D000001 ORTHO05D009433 6.2e-06 54.3 82 31.7
Prupe.8G181700 Prunus persica HOM05D000001 ORTHO05D000003 6.2e-06 54.3 76 32.9
SEGI_03350 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 6.2e-06 54.3 78 41.0
Sopen05g003600 Solanum pennellii HOM05D000001 ORTHO05D001705 6.2e-06 54.3 97 27.8
TAR376G0558 Trochodendron aralioides HOM05D000001 ORTHO05D001705 6.2e-06 54.3 75 34.7
AagrBONN_evm.TU.Sc2ySwM_117.3506 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.1e-06 53.9 69 31.9
BcaC09g50353 Brassica carinata HOM05D000001 ORTHO05D010139 8.1e-06 53.9 71 38.0
C06p45620 Brassica napus HOM05D000001 ORTHO05D009433 8.1e-06 53.9 78 30.8
BolC1t02578H Brassica oleracea HOM05D000001 ORTHO05D010139 8.1e-06 53.9 71 38.0
BraA01t02018Z Brassica rapa HOM05D000001 ORTHO05D010139 8.1e-06 53.9 71 38.0
MELO3C035015.2 Cucumis melo HOM05D000001 ORTHO05D000003 8.1e-06 53.9 76 32.9
Lj7C50G4 Lonicera japonica HOM05D000001 ORTHO05D009545 8.1e-06 53.9 95 34.7
Medtr4g094502 Medicago truncatula HOM05D000001 ORTHO05D000003 8.1e-06 53.9 71 35.2
Nn1g04383 Nelumbo nucifera HOM05D000001 ORTHO05D000003 8.1e-06 53.9 76 31.6
Nn5g28072 Nelumbo nucifera HOM05D000001 ORTHO05D000003 8.1e-06 53.9 92 31.5
Nn6g34838 Nelumbo nucifera HOM05D000001 ORTHO05D000003 8.1e-06 53.9 73 38.4
Solyc05g007740.3 Solanum lycopersicum HOM05D000001 ORTHO05D001705 8.1e-06 53.9 97 27.8
TWI36G1094 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 8.1e-06 53.9 69 37.7


User provided reference genes

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