Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09137 Sequoiadendron giganteum HOM05D005103 ORTHO05D007000 3.1e-40 167.9 81 100.0
Cpa.g.sc69.64 Carica papaya HOM05D005103 ORTHO05D007000 2.2e-09 65.5 36 77.8
EL10Ac6g13454 Beta vulgaris HOM05D005103 ORTHO05D007000 2.9e-09 65.1 64 51.6
ECA233G6025 Erigeron canadensis HOM05D005103 ORTHO05D007000 2.9e-09 65.1 64 51.6
Migut.E00173 Erythranthe guttata HOM05D005103 ORTHO05D007000 2.9e-09 65.1 34 85.3
FAN28G2415 Fragaria x ananassa HOM05D005103 ORTHO05D007000 2.9e-09 65.1 64 53.1
Hma1.2p1_0536F.1_g173890 Hydrangea macrophylla HOM05D005103 ORTHO05D007000 2.9e-09 65.1 64 53.1
Manes.13G028800 Manihot esculenta HOM05D005103 ORTHO05D007000 2.9e-09 65.1 64 53.1
FvH4_4g34130 Fragaria vesca HOM05D005103 ORTHO05D007000 3.7e-09 64.7 64 53.1
FAN07G1472 Fragaria x ananassa HOM05D005103 ORTHO05D007000 3.7e-09 64.7 64 53.1
FAN12G1504 Fragaria x ananassa HOM05D005103 ORTHO05D007000 3.7e-09 64.7 64 53.1
RcHm_v2.0_Chr4g0443641 Rosa chinensis HOM05D005103 ORTHO05D007000 3.7e-09 64.7 64 53.1
Atru.chr11.2052 Acer truncatum HOM05D005103 ORTHO05D007000 6.4e-09 63.9 72 50.0
CANSAT01G1076 Cannabis sativa HOM05D005103 ORTHO05D007000 6.4e-09 63.9 64 51.6
Ca_22673_v3 Cicer arietinum L. HOM05D005103 ORTHO05D007000 6.4e-09 63.9 64 51.6
Potri.001G329900 Populus trichocarpa HOM05D005103 ORTHO05D007000 6.4e-09 63.9 64 53.1
Sabra16G0211200 Salix brachista HOM05D005103 ORTHO05D007000 6.4e-09 63.9 64 53.1
Hund08250 Selenicereus undatus HOM05D005103 ORTHO05D007000 6.4e-09 63.9 64 53.1
TPR.G20819 Trifolium pratense HOM05D005103 ORTHO05D007000 6.4e-09 63.9 64 51.6
TWI36G0719 Tripterygium wilfordii HOM05D005103 ORTHO05D007000 6.4e-09 63.9 64 53.1
CiPaw.05G185300 Carya illinoinensis HOM05D005103 ORTHO05D007000 8.3e-09 63.5 36 72.2
Glyma.08G285500 Glycine max HOM05D005103 ORTHO05D007000 8.3e-09 63.5 64 53.1
Glyma.18G139700 Glycine max HOM05D005103 ORTHO05D007000 8.3e-09 63.5 64 53.1
Lj4g0021818 Lotus japonicus HOM05D005103 ORTHO05D007000 8.3e-09 63.5 64 53.1
Lalb_Chr05g0228271 Lupinus albus HOM05D005103 ORTHO05D007000 8.3e-09 63.5 64 53.1
Medtr8g064990 Medicago truncatula HOM05D005103 ORTHO05D007000 8.3e-09 63.5 64 51.6
Cfa009167 Carpinus fangiana HOM05D004343 ORTHO05D005695 1.1e-08 63.2 64 51.6
Psat4g124520 Pisum sativum HOM05D005103 ORTHO05D007000 1.1e-08 63.2 64 51.6
Rhsim12G0115700 Rhododendron simsii HOM05D005103 ORTHO05D007000 1.1e-08 63.2 62 54.8
Solyc05g005180.3 Solanum lycopersicum HOM05D005103 ORTHO05D007000 1.1e-08 63.2 62 54.8
arahy.Tifrunner.gnm1.ann1.KRF4CZ Arachis hypogaea HOM05D000049 ORTHO05D000027 1.4e-08 62.8 64 51.6
CiPaw.05G185400 Carya illinoinensis HOM05D005103 ORTHO05D007000 1.4e-08 62.8 34 76.5
Ciclev10032070m.g Citrus clementina HOM05D005103 ORTHO05D007000 1.4e-08 62.8 62 53.2
Haze_12201 Corylus avellana HOM05D005103 ORTHO05D007000 1.4e-08 62.8 64 50.0
MELO3C011988.2 Cucumis melo HOM05D005103 ORTHO05D007000 1.4e-08 62.8 62 54.8
CsaV3_5G031500 Cucumis sativus L. HOM05D005103 ORTHO05D007000 1.4e-08 62.8 62 54.8
SalBow2G2893 Salvia bowleyana HOM05D005103 ORTHO05D007000 1.4e-08 62.8 47 63.8
arahy.Tifrunner.gnm1.ann1.N1WY3Z Arachis hypogaea HOM05D000049 ORTHO05D007000 1.9e-08 62.4 64 51.6
CSS0036380 Camellia sinensis var. sinensis HOM05D005103 ORTHO05D007000 1.9e-08 62.4 62 53.2
CARHR052450 Cardamine hirsuta HOM05D005103 ORTHO05D007000 1.9e-08 62.4 64 50.0
Eucgr.H02566 Eucalyptus grandis HOM05D005103 ORTHO05D007000 1.9e-08 62.4 64 51.6
Eucgr.H02570 Eucalyptus grandis HOM05D005103 ORTHO05D007000 1.9e-08 62.4 64 51.6
HanXRQChr08g0208651 Helianthus annuus HOM05D005103 ORTHO05D007000 1.9e-08 62.4 62 51.6
Lsat_1_v5_gn_8_154721 Lactuca sativa HOM05D005103 ORTHO05D007000 1.9e-08 62.4 62 51.6
Phvul.003G061500 Phaseolus vulgaris HOM05D005103 ORTHO05D007000 1.9e-08 62.4 64 51.6
Zm00001eb157640 Zea mays HOM05D005103 ORTHO05D007000 1.9e-08 62.4 62 54.8
MSTRG.2402 Avicennia marina HOM05D005103 ORTHO05D007000 2.4e-08 62.0 34 76.5
CAN.G1110.47 Capsicum annuum HOM05D005103 ORTHO05D007000 2.4e-08 62.0 62 53.2
Cc11_g15280 Coffea canephora HOM05D005103 ORTHO05D007000 2.4e-08 62.0 62 53.2
Nitab4.5_0001366g0100 Nicotiana tabacum HOM05D005103 ORTHO05D007000 2.4e-08 62.0 62 53.2
SalBow8G2510 Salvia bowleyana HOM05D005103 ORTHO05D007000 2.4e-08 62.0 34 76.5
SMO118G0541 Selaginella moellendorffii HOM05D005103 ORTHO05D007000 2.4e-08 62.0 34 79.4
Sopen05g001190 Solanum pennellii HOM05D005103 ORTHO05D007000 2.4e-08 62.0 62 53.2
PGSC0003DMG400013515 Solanum tuberosum HOM05D005103 ORTHO05D007000 2.4e-08 62.0 62 53.2
unitig_22.g6431 Utricularia gibba HOM05D005103 ORTHO05D007000 2.4e-08 62.0 34 76.5
ATR1091G039 Amborella trichopoda HOM05D005103 ORTHO05D007000 3.2e-08 61.6 34 79.4
AagrBONN_evm.TU.Sc2ySwM_228.4093 Anthoceros agrestis HOM05D005103 ORTHO05D007000 3.2e-08 61.6 34 79.4
AT1G60550 Arabidopsis thaliana HOM05D005103 ORTHO05D007000 3.2e-08 61.6 64 48.4
BcaC04g22235 Brassica carinata HOM05D005103 ORTHO05D007000 3.2e-08 61.6 64 50.0
BolC9t55079H Brassica oleracea HOM05D005103 ORTHO05D007000 3.2e-08 61.6 64 50.0
Carub.0002s0477 Capsella rubella HOM05D005103 ORTHO05D007000 3.2e-08 61.6 64 48.4
AUR62005582 Chenopodium quinoa HOM05D005103 ORTHO05D007000 3.2e-08 61.6 36 72.2
MD16G1095300 Malus domestica HOM05D005103 ORTHO05D007000 3.2e-08 61.6 64 48.4
PSO135G0342 Papaver somniferum HOM05D005103 ORTHO05D001998 3.2e-08 61.6 62 51.6
PSO135G0586 Papaver somniferum HOM05D005103 ORTHO05D001998 3.2e-08 61.6 62 51.6
PSO135G1055 Papaver somniferum HOM05D005103 ORTHO05D001998 3.2e-08 61.6 62 51.6
PSO339G1713 Papaver somniferum HOM05D005103 ORTHO05D001998 3.2e-08 61.6 67 47.8
PSO675G3968 Papaver somniferum HOM05D005103 ORTHO05D001998 3.2e-08 61.6 62 51.6
Sc11g0001100 Simmondsia chinensis HOM05D005103 ORTHO05D007000 3.2e-08 61.6 64 50.0
Actinidia15054 Actinidia chinensis HOM05D005103 ORTHO05D007000 4.1e-08 61.2 62 53.2
MSTRG.586 Avicennia marina HOM05D005103 ORTHO05D007000 4.1e-08 61.2 34 76.5
BcaB07g31222 Brassica carinata HOM05D005103 ORTHO05D007000 4.1e-08 61.2 64 48.4
A09p17460 Brassica napus HOM05D005103 ORTHO05D007000 4.1e-08 61.2 64 48.4
C09p21740 Brassica napus HOM05D005103 ORTHO05D007000 4.1e-08 61.2 64 48.4
AUR62024148 Chenopodium quinoa HOM05D005103 ORTHO05D007000 4.1e-08 61.2 36 72.2
Thhalv10023583m.g Eutrema salsugineum HOM05D005103 ORTHO05D007000 4.1e-08 61.2 64 46.9
FAN22G1528 Fragaria x ananassa HOM05D005103 ORTHO05D007000 4.1e-08 61.2 64 51.6
Peaxi162Scf00710g00537 Petunia axillaris HOM05D005103 ORTHO05D007000 4.1e-08 61.2 62 51.6
Sp2g04210 Schrenkiella parvula HOM05D005103 ORTHO05D007000 4.1e-08 61.2 64 48.4
SGA_v2.0_scaffold87G27034 Striga asiatica HOM05D005103 ORTHO05D007000 4.1e-08 61.2 34 76.5
VMungo0251G3149 Vigna mungo HOM05D005103 ORTHO05D007000 4.1e-08 61.2 64 51.6
Actinidia13502 Actinidia chinensis HOM05D005103 ORTHO05D007000 5.4e-08 60.8 62 53.2
AL2G16100 Arabidopsis lyrata HOM05D005103 ORTHO05D007000 5.4e-08 60.8 62 50.0
QL05p020444 Quercus lobata HOM05D005103 ORTHO05D007000 5.4e-08 60.8 62 51.6
BraA09t37372Z Brassica rapa HOM05D005103 ORTHO05D007000 7.1e-08 60.5 62 50.0
CSS0002893 Camellia sinensis var. sinensis HOM05D005103 ORTHO05D007000 7.1e-08 60.5 62 51.6
Gohir.A03G138500 Gossypium hirsutum HOM05D005103 ORTHO05D007000 7.1e-08 60.5 62 51.6
Gohir.D02G161500 Gossypium hirsutum HOM05D005103 ORTHO05D007000 7.1e-08 60.5 62 51.6
Gorai.005G181500 Gossypium raimondii HOM05D005103 ORTHO05D007000 7.1e-08 60.5 62 51.6
PSO063G5765 Papaver somniferum HOM05D005103 ORTHO05D001998 7.1e-08 60.5 61 52.5
PSO170G3944 Papaver somniferum HOM05D005103 ORTHO05D007000 7.1e-08 60.5 62 51.6
PSO302G0153 Papaver somniferum HOM05D005103 ORTHO05D007000 7.1e-08 60.5 62 51.6
PSO339G1430 Papaver somniferum HOM05D005103 ORTHO05D001998 7.1e-08 60.5 61 52.5
PSO339G3880 Papaver somniferum HOM05D005103 ORTHO05D001998 7.1e-08 60.5 61 52.5
PSO384G0715 Papaver somniferum HOM05D005103 ORTHO05D007000 7.1e-08 60.5 61 52.5
Prupe.1G251300 Prunus persica HOM05D005103 ORTHO05D007000 7.1e-08 60.5 64 50.0
Sed0013752 Sechium edule HOM05D005103 ORTHO05D007000 7.1e-08 60.5 62 51.6
Thecc.02G252800 Theobroma cacao HOM05D005103 ORTHO05D007000 7.1e-08 60.5 62 51.6
TAR374G0881 Trochodendron aralioides HOM05D005103 ORTHO05D007000 7.1e-08 60.5 62 51.6
CBR_g40708 Chara braunii HOM05D005103 ORTHO05D007000 9.2e-08 60.1 34 76.5
Duzib268G0797 Durio zibethinus HOM05D005103 ORTHO05D007000 9.2e-08 60.1 62 50.0
Lj6A807T89 Lonicera japonica HOM05D005103 ORTHO05D007000 9.2e-08 60.1 62 53.2
Nitab4.5_0004066g0060 Nicotiana tabacum HOM05D005103 ORTHO05D007000 9.2e-08 60.1 62 51.6
PSO170G4926 Papaver somniferum HOM05D005103 ORTHO05D001998 9.2e-08 60.1 61 52.5
PRCOL_00003474 Prasinoderma coloniale HOM05D005103 ORTHO05D007000 9.2e-08 60.1 34 73.5
PGR119G0537 Punica granatum HOM05D005103 ORTHO05D007000 9.2e-08 60.1 33 78.8
Cre02.g114250 Chlamydomonas reinhardtii HOM05D005103 ORTHO05D007000 1.2e-07 59.7 34 73.5
COL.COLO4_24196 Corchorus olitorius HOM05D005103 ORTHO05D007000 1.2e-07 59.7 62 51.6
CDE02G3529 Ceratophyllum demersum HOM05D005103 ORTHO05D007000 1.6e-07 59.3 62 50.0
Os01g0662700 Oryza sativa ssp. japonica HOM05D005103 ORTHO05D007000 1.6e-07 59.3 34 76.5
THA.LOC104819418 Tarenaya hassleriana HOM05D005103 ORTHO05D007000 1.6e-07 59.3 62 50.0
vmacro16234 Vaccinium macrocarpon HOM05D005103 ORTHO05D007000 1.6e-07 59.3 62 51.6
MD13G1094000 Malus domestica HOM05D005103 ORTHO05D007000 2.1e-07 58.9 62 50.0
Cc11_g11340 Coffea canephora HOM05D005103 ORTHO05D007000 2.7e-07 58.5 34 70.6
Nn4g24650 Nelumbo nucifera HOM05D005103 ORTHO05D007000 3.5e-07 58.2 33 72.7
Oeu055456.1 Olea europaea HOM05D005103 ORTHO05D007000 4.6e-07 57.8 34 67.6
GSVIVG01013769001 Vitis vinifera HOM05D005103 ORTHO05D007000 4.6e-07 57.8 64 46.9
Aa31LG2G9910 Aethionema arabicum HOM05D005103 ORTHO05D007000 6.0e-07 57.4 60 50.0
Pp3c19_10340 Physcomitrium patens HOM05D005103 ORTHO05D007000 6.0e-07 57.4 34 73.5
Aqoxy3G02909 Aquilegia oxysepala HOM05D005103 ORTHO05D007000 3.0e-06 55.1 62 45.2
HPP92_006168 Vanilla planifolia HOM05D005103 ORTHO05D007000 3.0e-06 55.1 60 51.7
HPP92_006192 Vanilla planifolia HOM05D005103 ORTHO05D007000 3.0e-06 55.1 60 51.7
HPP92_006259 Vanilla planifolia HOM05D005103 ORTHO05D007000 3.0e-06 55.1 60 51.7
BcaC04g22237 Brassica carinata HOM05D005103 ORTHO05D007000 3.9e-06 54.7 44 52.3
BcaC04g22240 Brassica carinata HOM05D005103 ORTHO05D007000 3.9e-06 54.7 44 52.3


User provided reference genes

Program Settings