Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 8.5e-97 357.1 189 100.0
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 4.9e-68 261.5 180 76.7
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 3.6e-63 245.4 180 72.8
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 8.0e-63 244.2 184 70.1
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.8e-62 243.0 187 67.9
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 3.1e-62 242.3 179 69.3
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.0e-62 241.9 187 68.4
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 4.0e-62 241.9 178 69.7
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 8.9e-62 240.7 187 66.3
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 8.9e-62 240.7 185 67.0
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 8.9e-62 240.7 181 68.5
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 1.2e-61 240.4 177 72.3
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.5e-61 240.0 186 66.7
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.5e-61 240.0 185 67.0
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 2.0e-61 239.6 184 66.3
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 2.0e-61 239.6 173 72.3
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 2.6e-61 239.2 185 67.0
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 2.6e-61 239.2 182 69.8
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 2.6e-61 239.2 185 65.9
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.4e-61 238.8 173 71.1
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.4e-61 238.4 187 67.9
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.4e-61 238.4 187 67.9
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 4.4e-61 238.4 181 66.9
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 5.8e-61 238.0 185 66.5
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 5.8e-61 238.0 181 68.5
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 5.8e-61 238.0 182 67.6
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 7.5e-61 237.7 189 66.7
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 7.5e-61 237.7 179 67.6
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 7.5e-61 237.7 187 65.8
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 9.8e-61 237.3 186 65.6
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 9.8e-61 237.3 185 67.0
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 1.3e-60 236.9 170 71.8
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 1.7e-60 236.5 181 68.0
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 2.2e-60 236.1 174 70.1
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.2e-60 236.1 180 67.8
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.9e-60 235.7 178 68.0
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 2.9e-60 235.7 182 67.0
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 2.9e-60 235.7 172 68.6
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.9e-60 235.7 177 68.9
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 3.7e-60 235.3 181 68.5
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 3.7e-60 235.3 171 70.8
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 3.7e-60 235.3 169 71.0
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 3.7e-60 235.3 188 67.0
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 4.9e-60 235.0 183 67.8
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 4.9e-60 235.0 184 67.4
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 6.4e-60 234.6 178 69.1
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.4e-60 234.6 179 68.7
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 8.3e-60 234.2 188 63.8
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 8.3e-60 234.2 187 64.7
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 8.3e-60 234.2 183 67.2
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.4e-59 233.4 171 69.0
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 1.4e-59 233.4 185 65.9
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 1.4e-59 233.4 183 67.8
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.4e-59 233.4 173 69.9
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 1.9e-59 233.0 179 67.6
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 2.4e-59 232.6 176 68.8
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 2.4e-59 232.6 182 65.9
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 2.4e-59 232.6 187 64.2
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 2.4e-59 232.6 177 67.2
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 3.2e-59 232.3 174 69.5
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 3.2e-59 232.3 185 64.9
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 3.2e-59 232.3 178 66.3
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 4.1e-59 231.9 189 64.0
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 5.4e-59 231.5 168 70.2
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 5.4e-59 231.5 177 68.4
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 5.4e-59 231.5 184 67.9
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 7.0e-59 231.1 181 68.0
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 7.0e-59 231.1 177 67.8
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 7.0e-59 231.1 178 67.4
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 7.0e-59 231.1 178 67.4
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 7.0e-59 231.1 188 66.0
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 7.0e-59 231.1 188 66.0
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 9.2e-59 230.7 174 67.8
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 9.2e-59 230.7 177 67.2
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 1.2e-58 230.3 187 64.7
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 1.2e-58 230.3 185 65.4
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 1.2e-58 230.3 180 67.2
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 2.1e-58 229.6 186 63.4
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.1e-58 229.6 185 63.8
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 2.1e-58 229.6 181 65.2
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 3.5e-58 228.8 187 62.6
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 6.0e-58 228.0 172 68.6
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 6.0e-58 228.0 204 62.3
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 7.8e-58 227.6 184 65.2
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.7e-57 226.5 184 64.7
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 2.3e-57 226.1 184 64.7
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.3e-57 226.1 187 64.7
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 3.0e-57 225.7 182 64.8
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 5.1e-57 224.9 194 62.9
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 8.6e-57 224.2 167 68.9
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 1.1e-56 223.8 174 65.5
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.1e-56 223.8 185 63.8
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.1e-56 223.8 175 65.7
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.5e-56 223.4 187 63.6
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.5e-56 223.4 184 63.6
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.5e-56 223.4 184 63.6
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 2.5e-56 222.6 185 64.9
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 2.5e-56 222.6 182 63.7
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.3e-56 222.2 167 68.3
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.3e-56 222.2 186 64.0
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 4.3e-56 221.9 175 65.1
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 5.6e-56 221.5 176 64.2
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.6e-56 221.5 179 65.4
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 9.5e-56 220.7 182 63.2
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 9.5e-56 220.7 184 63.0
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 9.5e-56 220.7 184 63.0
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 9.5e-56 220.7 182 63.2
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 9.5e-56 220.7 184 63.0
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 9.5e-56 220.7 184 63.0
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.5e-53 213.4 218 55.5
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 3.4e-53 212.2 227 53.3
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 1.7e-52 209.9 155 70.3
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 2.9e-52 209.1 227 52.9
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 8.3e-52 207.6 227 51.5
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 7.1e-51 204.5 159 67.9
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 7.1e-51 204.5 177 62.1
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 3.9e-49 198.7 159 65.4
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 6.6e-49 198.0 178 60.1
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 1.2e-47 193.7 133 72.2
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 2.8e-47 192.6 242 47.1
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 3.6e-47 192.2 141 68.1
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 8.1e-47 191.0 131 72.5
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 4.4e-45 185.3 124 74.2
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 4.9e-44 181.8 124 72.6
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.4e-44 181.0 179 57.0
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 3.5e-42 175.6 131 67.2
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.5e-40 169.5 123 70.7
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 7.3e-40 167.9 138 63.8
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.6e-39 166.8 125 68.8
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.7e-36 156.8 123 67.5
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.1e-35 154.1 209 48.8
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.4e-35 153.7 110 70.9
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.9e-35 153.3 130 60.8
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.0e-33 147.5 165 45.5
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.6e-31 139.0 109 67.0
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.1e-30 136.0 102 65.7
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 4.0e-30 135.6 184 39.7
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 9.0e-30 134.4 90 71.1
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 7.6e-29 131.3 117 61.5
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 9.9e-29 131.0 89 71.9
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 9.9e-29 131.0 171 39.2
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 8.4e-28 127.9 166 40.4
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-27 127.1 99 64.6
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 1.1e-24 117.5 107 59.8
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.9e-24 116.7 99 64.6
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.2e-23 111.7 82 67.1
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 8.1e-23 111.3 92 65.2
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.4e-22 110.5 94 63.8
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.6e-21 106.3 90 60.0
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 4.5e-21 105.5 75 68.0
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 2.5e-19 99.8 104 55.8
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 1.2e-18 97.4 101 52.5
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.0e-13 80.1 57 68.4
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-11 73.9 53 66.0
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.3e-09 67.4 61 57.4
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 7.4e-08 61.6 111 36.0
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.6e-07 60.5 111 36.0
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.6e-07 60.5 111 36.0
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.3e-07 58.5 111 35.1
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 8.2e-07 58.2 111 35.1


User provided reference genes

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