Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 3.6e-221 771.2 362 100.0
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 5.6e-89 332.0 188 76.1
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 1.3e-88 330.9 188 76.1
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 2.1e-88 330.1 188 76.1
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 2.8e-88 329.7 188 77.1
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 6.2e-88 328.6 188 76.6
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 6.2e-88 328.6 188 76.1
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 8.1e-88 328.2 193 74.6
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 8.1e-88 328.2 193 74.6
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 1.4e-87 327.4 188 76.1
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 1.8e-87 327.0 188 75.5
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 2.4e-87 326.6 188 76.6
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 3.1e-87 326.2 188 76.1
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 1.2e-86 324.3 188 75.5
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 1.5e-86 323.9 187 76.5
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.5e-86 323.9 188 75.5
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 2.0e-86 323.6 187 75.9
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 2.0e-86 323.6 188 75.0
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 2.6e-86 323.2 188 75.0
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 3.4e-86 322.8 188 73.9
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 7.6e-86 321.6 188 74.5
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 7.6e-86 321.6 188 75.0
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 9.9e-86 321.2 188 74.5
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 2.2e-85 320.1 188 75.0
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 2.9e-85 319.7 214 69.2
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 3.8e-85 319.3 188 73.9
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 4.9e-85 318.9 188 72.3
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 8.4e-85 318.2 188 72.9
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 8.4e-85 318.2 188 73.4
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 8.4e-85 318.2 188 74.5
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.1e-84 317.8 188 73.9
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 1.4e-84 317.4 188 73.9
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 1.4e-84 317.4 188 72.9
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 1.9e-84 317.0 188 73.9
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 1.9e-84 317.0 188 72.9
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 1.9e-84 317.0 188 72.9
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 3.2e-84 316.2 188 72.9
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 4.2e-84 315.8 188 72.3
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 7.1e-84 315.1 188 74.5
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 7.1e-84 315.1 188 72.9
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 7.1e-84 315.1 188 72.9
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 9.3e-84 314.7 188 72.3
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 1.2e-83 314.3 188 73.4
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 3.5e-83 312.8 188 72.9
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 3.5e-83 312.8 188 72.3
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 4.6e-83 312.4 188 72.9
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 6.0e-83 312.0 188 72.9
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 6.0e-83 312.0 188 72.9
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 7.9e-83 311.6 187 71.7
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 7.9e-83 311.6 187 71.7
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 7.9e-83 311.6 188 71.8
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 2.3e-82 310.1 188 72.9
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 2.3e-82 310.1 188 72.9
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 2.3e-82 310.1 196 71.4
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 3.0e-82 309.7 191 71.2
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 8.7e-82 308.1 188 72.3
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 7.4e-81 305.1 188 71.8
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 7.4e-81 305.1 188 71.3
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 7.4e-81 305.1 188 69.7
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 9.6e-81 304.7 203 66.0
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 6.2e-80 302.0 198 69.2
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 5.3e-79 298.9 173 74.6
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 1.5e-78 297.4 186 71.0
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 3.4e-78 296.2 188 69.1
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 4.5e-78 295.8 188 69.1
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 4.5e-78 295.8 188 69.1
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 4.5e-78 295.8 188 69.1
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 4.5e-78 295.8 188 69.1
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 5.8e-78 295.4 188 69.1
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 1.3e-77 294.3 188 68.6
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 1.7e-77 293.9 188 69.7
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 1.7e-77 293.9 188 68.6
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 1.7e-77 293.9 188 68.6
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 2.2e-77 293.5 188 68.6
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 2.9e-77 293.1 188 68.1
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 1.1e-76 291.2 188 68.1
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 1.1e-76 291.2 188 68.1
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 1.1e-76 291.2 188 68.1
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 1.1e-76 291.2 188 68.1
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 2.4e-76 290.0 192 65.6
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 2.7e-75 286.6 264 52.7
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 3.5e-75 286.2 188 66.0
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 1.1e-73 281.2 215 60.5
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 1.5e-73 280.8 216 60.2
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 4.3e-73 279.3 166 75.9
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 4.3e-73 279.3 166 75.9
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 4.3e-73 279.3 162 74.7
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 2.1e-72 276.9 182 65.9
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 2.8e-72 276.6 181 67.4
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 6.2e-72 275.4 266 51.5
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 4.0e-71 272.7 160 73.1
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 6.9e-71 271.9 161 72.7
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 9.0e-71 271.6 161 72.0
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 2.0e-70 270.4 191 62.3
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 1.3e-69 267.7 163 71.2
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 4.2e-68 262.7 214 57.9
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 5.5e-68 262.3 151 76.2
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 4.1e-63 246.1 188 61.2
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 2.0e-62 243.8 188 61.7
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 7.2e-60 235.3 188 59.6
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.2e-59 234.6 188 59.6
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.2e-56 223.8 122 78.7
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 4.5e-54 216.1 132 73.5
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 2.6e-49 200.3 139 66.2
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 5.7e-49 199.1 132 68.2
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 1.5e-36 157.9 97 74.2
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 3.2e-36 156.8 97 72.2
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 4.2e-36 156.4 97 71.1
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 8.0e-35 152.1 104 66.3
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 4.0e-34 149.8 97 71.1
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 8.8e-34 148.7 103 66.0
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 9.7e-33 145.2 97 67.0
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 2.4e-31 140.6 125 56.8
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.3e-29 134.8 87 69.0
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 7.2e-28 129.0 87 67.8
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 7.2e-28 129.0 87 67.8
SEGI_00881 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 1.4e-26 124.8 75 77.3
SEGI_19657 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 3.7e-24 116.7 74 75.7
SEGI_05073 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 4.8e-24 116.3 75 74.7
SEGI_20472 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 4.8e-24 116.3 75 72.0
SEGI_26003 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 1.4e-23 114.8 75 72.0
SEGI_25074 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 4.1e-23 113.2 75 70.7
SEGI_30750 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 4.1e-23 113.2 75 69.3
SEGI_07590 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 9.1e-23 112.1 75 72.0
SEGI_00018 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 1.2e-22 111.7 128 49.2
SEGI_41381 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 1.6e-22 111.3 75 69.3
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.5e-22 110.2 152 42.1
SEGI_14988 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 3.5e-22 110.2 77 67.5
SEGI_00127 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 4.5e-22 109.8 75 69.3
SEGI_13450 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 4.5e-22 109.8 74 70.3
SEGI_31799 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 4.5e-22 109.8 75 69.3
SEGI_05499 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 1.0e-21 108.6 75 66.7
SEGI_15451 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 2.2e-16 90.9 136 44.1
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.4e-15 88.2 79 53.2
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.6e-14 84.7 56 64.3
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.6e-14 84.7 56 64.3
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 1.6e-14 84.7 79 54.4
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.5e-14 83.6 56 64.3
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.3e-13 81.6 56 64.3
SEGI_41627 Sequoiadendron giganteum HOM05D000014 ORTHO05D000044 4.3e-12 76.6 46 78.3
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 3.6e-11 73.6 41 75.6
SEGI_11384 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 4.7e-11 73.2 40 82.5
SEGI_39433 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 1.0e-10 72.0 52 65.4
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.3e-10 70.9 51 60.8
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.3e-10 70.9 51 60.8
SEGI_35674 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 4.4e-09 66.6 77 49.4
SEGI_22694 Sequoiadendron giganteum HOM05D000014 ORTHO05D011582 1.3e-08 65.1 46 63.0
SEGI_19669 Sequoiadendron giganteum HOM05D009756 ORTHO05D011582 2.2e-08 64.3 171 31.0
SEGI_07042 Sequoiadendron giganteum HOM05D000873 ORTHO05D019844 2.9e-08 63.9 43 69.8


User provided reference genes

Program Settings