Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08858 Sequoiadendron giganteum HOM05D004978 ORTHO05D005621 4.6e-39 164.1 82 100.0
CANSAT25G0263 Cannabis sativa HOM05D004978 ORTHO05D005621 3.0e-14 81.6 45 77.8
Zm00001eb370120 Zea mays HOM05D004978 ORTHO05D005621 1.1e-13 79.7 48 77.1
arahy.Tifrunner.gnm1.ann1.54WUVN Arachis hypogaea HOM05D004978 ORTHO05D005621 1.9e-13 79.0 54 66.7
Lj5g0010127 Lotus japonicus HOM05D004978 ORTHO05D005621 2.5e-13 78.6 45 73.3
Carub.0006s1818 Capsella rubella HOM05D004978 ORTHO05D005621 4.3e-13 77.8 61 63.9
PGR044G1133 Punica granatum HOM05D004978 ORTHO05D005621 4.3e-13 77.8 46 71.7
Sc05g0001310 Simmondsia chinensis HOM05D004978 ORTHO05D005621 4.3e-13 77.8 45 71.1
Ca_09727_v3 Cicer arietinum L. HOM05D004978 ORTHO05D005621 7.4e-13 77.0 45 73.3
Ciclev10019332m.g Citrus clementina HOM05D004978 ORTHO05D005621 7.4e-13 77.0 45 73.3
Dinv32884 Davidia involucrata HOM05D004978 ORTHO05D005621 7.4e-13 77.0 45 75.6
Phvul.007G175000 Phaseolus vulgaris HOM05D004978 ORTHO05D005621 7.4e-13 77.0 45 73.3
Potri.005G215200 Populus trichocarpa HOM05D004978 ORTHO05D005621 7.4e-13 77.0 45 77.8
Aqoxy5G00398 Aquilegia oxysepala HOM05D004978 ORTHO05D005621 1.3e-12 76.3 45 73.3
Lalb_Chr02g0142521 Lupinus albus HOM05D004978 ORTHO05D005621 1.3e-12 76.3 44 75.0
Sed0003895 Sechium edule HOM05D004978 ORTHO05D005621 1.3e-12 76.3 68 58.8
COL.COLO4_09187 Corchorus olitorius HOM05D004978 ORTHO05D005621 2.1e-12 75.5 45 73.3
Glyma.10G029800 Glycine max HOM05D004978 ORTHO05D005621 2.1e-12 75.5 45 71.1
Medtr1g071300 Medicago truncatula HOM05D004978 ORTHO05D005621 2.1e-12 75.5 45 71.1
BcaB01g04828 Brassica carinata HOM05D004978 ORTHO05D005621 2.8e-12 75.1 59 62.7
C03p11220 Brassica napus HOM05D004978 ORTHO05D005621 2.8e-12 75.1 59 62.7
BolC3t13593H Brassica oleracea HOM05D004978 ORTHO05D005621 2.8e-12 75.1 59 62.7
ClCG09G007410 Citrullus lanatus HOM05D004978 ORTHO05D005621 3.7e-12 74.7 45 73.3
CsaV3_7G027890 Cucumis sativus L. HOM05D004978 ORTHO05D005621 3.7e-12 74.7 45 73.3
TAR636G0163 Trochodendron aralioides HOM05D004978 ORTHO05D005621 3.7e-12 74.7 45 68.9
MELO3C015807.2 Cucumis melo HOM05D004978 ORTHO05D005621 4.8e-12 74.3 68 57.4
Thhalv10013262m.g Eutrema salsugineum HOM05D004978 ORTHO05D005621 4.8e-12 74.3 51 66.7
TPR.G29273 Trifolium pratense HOM05D004978 ORTHO05D005621 4.8e-12 74.3 45 71.1
AagrBONN_evm.TU.Sc2ySwM_117.2029 Anthoceros agrestis HOM05D004978 ORTHO05D005621 6.2e-12 73.9 60 58.3
Glyma.02G144267 Glycine max HOM05D004978 ORTHO05D005621 6.2e-12 73.9 45 71.1
MD03G1258000 Malus domestica HOM05D004978 ORTHO05D005621 6.2e-12 73.9 45 71.1
Psat6g058480 Pisum sativum HOM05D004978 ORTHO05D005621 6.2e-12 73.9 45 71.1
MD11G1278700 Malus domestica HOM05D004978 ORTHO05D005621 8.2e-12 73.6 45 73.3
Manes.05G081900 Manihot esculenta HOM05D004978 ORTHO05D005621 8.2e-12 73.6 45 73.3
TWI75G1276 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 8.2e-12 73.6 57 64.9
Atru.chr5.1521 Acer truncatum HOM05D004978 ORTHO05D005621 1.1e-11 73.2 45 66.7
ATR0665G047 Amborella trichopoda HOM05D004978 ORTHO05D005621 1.1e-11 73.2 45 71.1
arahy.Tifrunner.gnm1.ann1.ZM38TH Arachis hypogaea HOM05D004978 ORTHO05D005621 1.1e-11 73.2 51 64.7
Lsat_1_v5_gn_8_93980 Lactuca sativa HOM05D004978 ORTHO05D005621 1.1e-11 73.2 56 62.5
GSVIVG01003121001 Vitis vinifera HOM05D004978 ORTHO05D005621 1.1e-11 73.2 45 71.1
AT5G19840 Arabidopsis thaliana HOM05D004978 ORTHO05D005621 1.4e-11 72.8 59 59.3
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 1.4e-11 72.8 45 71.1
Migut.D00356 Erythranthe guttata HOM05D004978 ORTHO05D005621 1.4e-11 72.8 45 71.1
AL6G31360 Arabidopsis lyrata HOM05D004978 ORTHO05D005621 1.8e-11 72.4 45 68.9
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 1.8e-11 72.4 45 71.1
Gohir.D08G072400 Gossypium hirsutum HOM05D004978 ORTHO05D005621 1.8e-11 72.4 45 68.9
Gorai.004G076600 Gossypium raimondii HOM05D004978 ORTHO05D005621 1.8e-11 72.4 45 68.9
Prupe.8G234700 Prunus persica HOM05D004978 ORTHO05D005621 1.8e-11 72.4 65 58.5
Thecc.01G271500 Theobroma cacao HOM05D004978 ORTHO05D005621 2.4e-11 72.0 45 68.9
vmacro14887 Vaccinium macrocarpon HOM05D004978 ORTHO05D005621 2.4e-11 72.0 47 66.0
Haze_04642 Corylus avellana HOM05D004978 ORTHO05D005621 3.1e-11 71.6 62 56.5
Gohir.A08G063900 Gossypium hirsutum HOM05D004978 ORTHO05D005621 3.1e-11 71.6 45 68.9
CiPaw.07G086800 Carya illinoinensis HOM05D004978 ORTHO05D005621 4.0e-11 71.2 48 68.8
ECA236G1829 Erigeron canadensis HOM05D004978 ORTHO05D005621 4.0e-11 71.2 45 66.7
Nn1g02459 Nelumbo nucifera HOM05D004978 ORTHO05D005621 4.0e-11 71.2 45 71.1
PSO210G1189 Papaver somniferum HOM05D004978 ORTHO05D005621 4.0e-11 71.2 44 70.5
PSO832G2480 Papaver somniferum HOM05D004978 ORTHO05D005621 4.0e-11 71.2 44 70.5
QL12p042266 Quercus lobata HOM05D004978 ORTHO05D005621 4.0e-11 71.2 41 73.2
CARHR193040 Cardamine hirsuta HOM05D004978 ORTHO05D005621 5.3e-11 70.9 45 71.1
Rhsim01G0272000 Rhododendron simsii HOM05D004978 ORTHO05D005621 5.3e-11 70.9 45 66.7
Actinidia24924 Actinidia chinensis HOM05D004978 ORTHO05D005621 6.9e-11 70.5 43 72.1
SGA_v2.0_scaffold1G00534 Striga asiatica HOM05D004978 ORTHO05D005621 6.9e-11 70.5 52 59.6
TWI12G0244 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 9.0e-11 70.1 49 63.3
Cc01_g19000 Coffea canephora HOM05D004978 ORTHO05D005621 1.5e-10 69.3 45 64.4
Eucgr.K03324 Eucalyptus grandis HOM05D004978 ORTHO05D005621 1.5e-10 69.3 45 64.4
RcHm_v2.0_Chr6g0289951 Rosa chinensis HOM05D004978 ORTHO05D005621 1.5e-10 69.3 40 75.0
CAN.G433.6 Capsicum annuum HOM05D004978 ORTHO05D005621 2.0e-10 68.9 45 68.9
HanXRQChr04g0113941 Helianthus annuus HOM05D004978 ORTHO05D005621 2.0e-10 68.9 45 64.4
RcHm_v2.0_Chr6g0289911 Rosa chinensis HOM05D004978 ORTHO05D005621 2.0e-10 68.9 45 66.7
HPP92_027617 Vanilla planifolia HOM05D004978 ORTHO05D005621 2.0e-10 68.9 42 71.4
Hund09547 Selenicereus undatus HOM05D004978 ORTHO05D005621 3.4e-10 68.2 53 56.6
Solyc09g065690.4 Solanum lycopersicum HOM05D004978 ORTHO05D005621 3.4e-10 68.2 45 66.7
Sopen09g027430 Solanum pennellii HOM05D004978 ORTHO05D005621 3.4e-10 68.2 45 66.7
Cfa006202 Carpinus fangiana HOM05D004978 ORTHO05D005621 4.5e-10 67.8 48 62.5
Pp3c26_13750 Physcomitrium patens HOM05D004978 ORTHO05D005621 5.8e-10 67.4 46 60.9
FAN20G1006 Fragaria x ananassa HOM05D004978 ORTHO05D005621 7.6e-10 67.0 40 72.5
Sp6g24570 Schrenkiella parvula HOM05D004978 ORTHO05D005621 7.6e-10 67.0 56 60.7
DCAR_002701 Daucus carota HOM05D004978 ORTHO05D005621 1.0e-09 66.6 53 56.6
FvH4_2g22940 Fragaria vesca HOM05D004978 ORTHO05D005621 1.0e-09 66.6 45 66.7
FAN15G0608 Fragaria x ananassa HOM05D004978 ORTHO05D005621 1.0e-09 66.6 57 57.9
FAN27G2645 Fragaria x ananassa HOM05D004978 ORTHO05D005621 1.0e-09 66.6 57 57.9
Oeu014736.1 Olea europaea HOM05D004978 ORTHO05D005621 1.0e-09 66.6 41 70.7
EL10Ac5g10492 Beta vulgaris HOM05D004978 ORTHO05D005621 1.3e-09 66.2 40 72.5
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 1.7e-09 65.9 44 68.2
Duzib133G0140 Durio zibethinus HOM05D004978 ORTHO05D005621 1.7e-09 65.9 40 72.5
FAN24G2655 Fragaria x ananassa HOM05D004978 ORTHO05D005621 2.2e-09 65.5 40 72.5
QL01p000805 Quercus lobata HOM05D004978 ORTHO05D005621 2.2e-09 65.5 42 64.3
Aa31LG9G14570 Aethionema arabicum HOM05D004978 ORTHO05D005621 3.8e-09 64.7 58 55.2
CSS0039116 Camellia sinensis var. sinensis HOM05D004978 ORTHO05D005621 5.0e-09 64.3 40 70.0
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 6.5e-09 63.9 47 66.0
AUR62032283 Chenopodium quinoa HOM05D004978 ORTHO05D005621 8.4e-09 63.5 40 70.0
Nitab4.5_0004115g0020 Nicotiana tabacum HOM05D004978 ORTHO05D005621 8.4e-09 63.5 40 70.0
Sed0016751 Sechium edule HOM05D004978 ORTHO05D005621 8.4e-09 63.5 38 73.7
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.1e-08 63.2 47 63.8
PGSC0003DMG400019309 Solanum tuberosum HOM05D004978 ORTHO05D005621 1.1e-08 63.2 40 70.0
Ah.11g050220 Amaranthus hybridus HOM05D004978 ORTHO05D005621 2.5e-08 62.0 38 71.1
Mapoly0003s0071 Marchantia polymorpha HOM05D004978 ORTHO05D005621 4.2e-08 61.2 46 58.7
SMO367G0146 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 2.7e-07 58.5 56 57.1


User provided reference genes

Program Settings