Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 1.2e-92 343.2 176 100.0
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 2.6e-39 166.0 111 82.0
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.2e-12 77.4 87 48.3
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 1.8e-11 73.6 70 54.3
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 2.3e-11 73.2 81 50.6
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 3.9e-11 72.4 70 54.3
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 3.9e-11 72.4 71 53.5
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 3.9e-11 72.4 71 53.5
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 5.1e-11 72.0 70 54.3
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 6.7e-11 71.6 72 51.4
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 6.7e-11 71.6 70 54.3
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 8.7e-11 71.2 71 52.1
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 8.7e-11 71.2 73 52.1
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 1.1e-10 70.9 74 47.3
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 1.5e-10 70.5 70 50.0
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 1.5e-10 70.5 72 48.6
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 1.5e-10 70.5 72 48.6
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 1.5e-10 70.5 73 50.7
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 1.5e-10 70.5 71 52.1
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 1.9e-10 70.1 70 48.6
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 1.9e-10 70.1 70 51.4
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 1.9e-10 70.1 71 52.1
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 2.5e-10 69.7 70 52.9
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 3.3e-10 69.3 71 49.3
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 3.3e-10 69.3 66 57.6
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 7.4e-10 68.2 71 46.5
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 9.6e-10 67.8 67 55.2
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 1.3e-09 67.4 65 53.8
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 1.6e-09 67.0 70 47.1
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 2.1e-09 66.6 70 48.6
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 3.7e-09 65.9 68 52.9
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 3.7e-09 65.9 82 47.6
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 6.2e-09 65.1 64 50.0
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 8.1e-09 64.7 88 42.0
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 1.1e-08 64.3 64 51.6
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 1.1e-08 64.3 66 53.0
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 1.4e-08 63.9 71 47.9
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 1.4e-08 63.9 66 50.0
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 1.4e-08 63.9 81 44.4
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 1.4e-08 63.9 66 53.0
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 1.8e-08 63.5 72 48.6
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 1.8e-08 63.5 73 50.7
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 1.8e-08 63.5 70 45.7
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 1.8e-08 63.5 70 45.7
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 1.8e-08 63.5 70 45.7
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 1.8e-08 63.5 71 49.3
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 2.4e-08 63.2 70 48.6
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 2.4e-08 63.2 72 48.6
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 3.1e-08 62.8 71 49.3
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 3.1e-08 62.8 71 49.3
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 3.1e-08 62.8 66 45.5
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 3.1e-08 62.8 72 51.4
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 3.1e-08 62.8 66 50.0
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 3.1e-08 62.8 68 51.5
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 4.0e-08 62.4 73 50.7
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 4.0e-08 62.4 73 50.7
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 5.3e-08 62.0 66 48.5
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 6.9e-08 61.6 71 47.9
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 6.9e-08 61.6 67 50.7
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 9.0e-08 61.2 72 45.8
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 9.0e-08 61.2 72 45.8
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 9.0e-08 61.2 88 45.5
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 9.0e-08 61.2 64 51.6
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 1.2e-07 60.8 72 43.1
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.2e-07 60.8 66 51.5
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.2e-07 60.8 66 51.5
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 1.2e-07 60.8 70 47.1
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 1.5e-07 60.5 70 45.7
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 1.5e-07 60.5 70 45.7
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 1.5e-07 60.5 70 45.7
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 1.5e-07 60.5 70 45.7
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 1.5e-07 60.5 70 45.7
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 1.5e-07 60.5 70 45.7
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 1.5e-07 60.5 70 45.7
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 1.5e-07 60.5 70 50.0
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 1.5e-07 60.5 65 49.2
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 2.0e-07 60.1 70 45.7
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 3.4e-07 59.3 67 43.3
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 3.4e-07 59.3 70 45.7
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 3.4e-07 59.3 72 45.8
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 4.5e-07 58.9 70 45.7
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 4.5e-07 58.9 70 45.7
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 5.8e-07 58.5 71 42.3
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 5.8e-07 58.5 65 50.8
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 7.6e-07 58.2 65 49.2
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 7.6e-07 58.2 70 45.7
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 1.3e-06 57.4 64 42.2
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 2.2e-06 56.6 84 42.9
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 2.9e-06 56.2 69 42.0
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 2.9e-06 56.2 87 42.5
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 4.9e-06 55.5 65 47.7


User provided reference genes

Program Settings