Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 0.0e+00 2558.5 1302 100.0
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1122.1 1322 47.0
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 0.0e+00 1092.0 1353 45.8
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 1091.6 1316 45.7
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 1087.8 1317 45.8
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 1083.6 1316 46.4
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 1.5e-309 1066.6 1329 45.4
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 6.5e-305 1051.2 1317 45.2
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 6.5e-305 1051.2 1293 46.3
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 1.5e-304 1050.0 1313 44.3
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 2.0e-301 1039.6 1323 44.4
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 4.4e-301 1038.5 1306 45.9
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 4.5e-298 1028.5 1311 44.0
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 1.9e-296 1023.1 1316 45.0
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 4.2e-296 1021.9 1315 45.0
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 1.2e-295 1020.4 1321 43.7
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 8.8e-294 1014.2 1318 44.5
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 1.2e-293 1013.8 1306 44.4
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 2.6e-293 1012.7 1315 44.3
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 4.9e-292 1008.4 1311 44.0
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 2.0e-290 1003.0 1315 43.8
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 1.1e-288 997.3 1316 43.3
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 1.1e-288 997.3 1308 44.0
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 4.2e-288 995.3 1314 43.9
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.2e-287 993.8 1317 43.4
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 3.6e-287 992.3 1214 45.5
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 2.0e-285 986.5 1315 43.3
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 2.6e-285 986.1 1327 43.3
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 2.2e-284 983.0 1311 42.6
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 3.7e-284 982.2 1313 43.0
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 8.3e-284 981.1 1318 43.1
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 8.3e-284 981.1 1321 43.0
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 1.4e-283 980.3 1324 43.1
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 2.4e-283 979.5 1313 43.0
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 7.0e-283 978.0 1323 42.7
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 7.0e-283 978.0 1311 42.9
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 3.5e-282 975.7 1328 42.9
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 7.8e-282 974.5 1315 43.1
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 1.0e-281 974.2 1318 42.6
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 1.3e-281 973.8 1314 42.5
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 2.3e-281 973.0 1313 43.0
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 3.9e-281 972.2 1325 42.3
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 3.9e-281 972.2 1316 42.1
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 6.6e-281 971.5 1348 42.4
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 1.9e-280 969.9 1325 42.0
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 5.6e-280 968.4 1315 41.3
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 5.6e-280 968.4 1314 41.8
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 7.3e-280 968.0 1312 41.6
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 9.5e-280 967.6 1426 40.0
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 2.0e-277 959.9 1319 42.0
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 2.6e-277 959.5 1320 42.7
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 3.4e-277 959.1 1245 44.3
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 4.4e-277 958.7 1314 42.2
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 7.5e-277 958.0 1312 41.5
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 1.7e-276 956.8 1352 42.5
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 2.2e-276 956.4 1315 42.0
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 2.9e-276 956.1 1315 42.1
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 5.4e-275 951.8 1316 41.6
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 5.4e-275 951.8 1325 41.2
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 1.2e-274 950.7 1316 42.2
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 2.3e-273 946.4 1266 43.4
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 1.5e-272 943.7 1314 42.2
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 1.9e-272 943.3 1349 41.6
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 1.9e-272 943.3 1307 41.6
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 4.3e-272 942.2 1311 41.5
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 1.2e-271 940.6 1314 41.9
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 2.1e-271 939.9 1307 41.9
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 6.2e-271 938.3 1319 41.7
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 8.1e-271 937.9 1337 41.0
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 1.8e-270 936.8 1314 41.9
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 1.8e-270 936.8 1314 41.9
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 2.6e-269 932.9 1356 40.8
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 1.7e-268 930.2 1314 41.9
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 3.2e-267 926.0 1314 41.6
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 1.2e-266 924.1 1304 41.6
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 1.3e-265 920.6 1305 42.1
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 3.3e-264 916.0 1305 41.1
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 4.7e-263 912.1 1320 40.8
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 4.4e-261 905.6 1260 42.1
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 7.6e-261 904.8 1307 41.2
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 5.4e-259 898.7 1312 41.5
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 3.0e-257 892.9 1235 43.4
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 2.5e-256 889.8 1232 43.3
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 4.7e-255 885.6 1316 40.1
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 2.9e-252 876.3 1318 40.4
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 5.4e-251 872.1 1318 40.8
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 2.4e-235 820.1 1125 41.3
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 4.0e-230 802.7 1048 43.5
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 7.9e-226 788.5 1197 40.0
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 7.4e-216 755.4 1303 37.5
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 1.0e-185 655.2 1007 38.8
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 7.3e-163 579.3 912 37.8
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 7.0e-158 562.8 610 50.2
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 2.0e-136 491.5 665 44.7
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 1.1e-113 416.0 453 50.6
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 3.5e-109 401.0 767 33.8
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 4.6e-109 400.6 656 38.3
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 5.1e-100 370.5 467 45.6
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 2.3e-84 318.5 508 38.8
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.8e-66 258.5 340 45.9
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 5.0e-63 247.7 338 39.9
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 4.5e-56 224.6 653 28.5
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 3.9e-47 194.9 228 45.2
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 6.2e-45 187.6 227 45.8
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 3.4e-43 181.8 153 60.1
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 3.4e-43 181.8 146 61.6
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 4.4e-43 181.4 152 60.5
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 6.0e-32 144.4 195 41.5
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 9.5e-30 137.1 179 39.1
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 5.2e-28 131.3 137 45.3
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 4.9e-26 124.8 120 49.2
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 6.4e-26 124.4 416 26.2
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 3.9e-23 115.2 161 39.8
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.1e-22 113.6 102 54.9
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 2.8e-21 109.0 123 50.4
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.7e-16 92.4 70 62.9
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 8.1e-13 80.9 94 43.6
CARHR188760 Cardamine hirsuta HOM05D002653 ORTHO05D002623 4.0e-12 78.6 779 20.7
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.2e-11 77.0 260 27.3
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 9.9e-11 73.9 785 20.0
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 1.7e-10 73.2 543 18.6
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 2.9e-10 72.4 118 33.9
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 3.2e-09 68.9 791 19.2
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 4.2e-09 68.6 103 36.9
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.2e-08 67.0 61 62.3
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 7.9e-08 64.3 116 34.5
Mapoly0076s0037 Marchantia polymorpha HOM05D001092 ORTHO05D000923 1.0e-07 63.9 636 21.1
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 1.9e-06 59.7 129 30.2


User provided reference genes

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