Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08671 Sequoiadendron giganteum HOM05D000290 ORTHO05D026430 2.3e-66 255.4 123 100.0
HanXRQChr15g0471941 Helianthus annuus HOM05D000290 ORTHO05D002418 6.3e-16 87.8 57 66.7
PSO675G7818 Papaver somniferum HOM05D000290 ORTHO05D002418 8.2e-16 87.4 47 78.7
Atru.chr4.398 Acer truncatum HOM05D000290 ORTHO05D002418 2.4e-15 85.9 48 72.9
ECA238G4461 Erigeron canadensis HOM05D000290 ORTHO05D002418 2.4e-15 85.9 47 76.6
SalBow5G0667 Salvia bowleyana HOM05D000290 ORTHO05D002418 3.1e-15 85.5 47 74.5
TAR628G0248 Trochodendron aralioides HOM05D000290 ORTHO05D002418 3.1e-15 85.5 47 76.6
Peaxi162Scf01006g00026 Petunia axillaris HOM05D000290 ORTHO05D002418 4.1e-15 85.1 47 74.5
TWI74G1368 Tripterygium wilfordii HOM05D000290 ORTHO05D002418 4.1e-15 85.1 47 72.3
CAN.G267.22 Capsicum annuum HOM05D000290 ORTHO05D002418 5.3e-15 84.7 47 74.5
Lsat_1_v5_gn_2_67600 Lactuca sativa HOM05D000290 ORTHO05D002418 5.3e-15 84.7 47 74.5
Medtr3g094740 Medicago truncatula HOM05D000290 ORTHO05D002418 5.3e-15 84.7 47 72.3
Psat5g067200 Pisum sativum HOM05D000290 ORTHO05D002418 5.3e-15 84.7 47 72.3
vmacro18626 Vaccinium macrocarpon HOM05D000290 ORTHO05D002418 5.3e-15 84.7 45 77.8
Actinidia33364 Actinidia chinensis HOM05D000290 ORTHO05D002418 6.9e-15 84.3 47 70.2
HanXRQChr14g0446221 Helianthus annuus HOM05D000290 ORTHO05D002418 6.9e-15 84.3 47 74.5
Potri.007G082500 Populus trichocarpa HOM05D000290 ORTHO05D002418 6.9e-15 84.3 47 70.2
Solyc04g054190.3 Solanum lycopersicum HOM05D000290 ORTHO05D002418 6.9e-15 84.3 47 74.5
Sopen04g023660 Solanum pennellii HOM05D000290 ORTHO05D002418 6.9e-15 84.3 47 74.5
SGA_v2.0_scaffold47G17723 Striga asiatica HOM05D000290 ORTHO05D002418 6.9e-15 84.3 47 74.5
Zm00001eb244840 Zea mays HOM05D000290 ORTHO05D002418 9.1e-15 84.0 49 71.4
MELO3C007801.2 Cucumis melo HOM05D000290 ORTHO05D002418 1.2e-14 83.6 47 74.5
CsaV3_6G045940 Cucumis sativus L. HOM05D000290 ORTHO05D002418 1.2e-14 83.6 47 74.5
Nitab4.5_0004814g0010 Nicotiana tabacum HOM05D000290 ORTHO05D002418 1.2e-14 83.6 47 72.3
Sabra07G0069100 Salix brachista HOM05D000290 ORTHO05D002418 1.2e-14 83.6 47 70.2
TWI77G0161 Tripterygium wilfordii HOM05D000290 ORTHO05D002418 1.2e-14 83.6 47 72.3
ATR0564G333 Amborella trichopoda HOM05D000290 ORTHO05D002418 1.5e-14 83.2 47 72.3
arahy.Tifrunner.gnm1.ann1.S3R8GT Arachis hypogaea HOM05D000290 ORTHO05D002418 1.5e-14 83.2 47 72.3
Migut.H02416 Erythranthe guttata HOM05D000290 ORTHO05D002418 1.5e-14 83.2 49 67.3
MD15G1334400 Malus domestica HOM05D000290 ORTHO05D002418 1.5e-14 83.2 50 70.0
CSS0019128 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D002418 2.0e-14 82.8 47 70.2
CANSAT01G1322 Cannabis sativa HOM05D000290 ORTHO05D002418 2.0e-14 82.8 47 72.3
Hma1.2p1_0070F.1_g037540 Hydrangea macrophylla HOM05D000290 ORTHO05D002418 2.0e-14 82.8 47 70.2
Nitab4.5_0000156g0150 Nicotiana tabacum HOM05D000290 ORTHO05D002418 2.0e-14 82.8 47 70.2
AL8G42440 Arabidopsis lyrata HOM05D000290 ORTHO05D002418 2.6e-14 82.4 47 70.2
Carub.0008s2577 Capsella rubella HOM05D000290 ORTHO05D002418 2.6e-14 82.4 47 70.2
CiPaw.04G092900 Carya illinoinensis HOM05D000290 ORTHO05D002418 2.6e-14 82.4 47 68.1
CDE05G1393 Ceratophyllum demersum HOM05D001902 ORTHO05D002418 2.6e-14 82.4 47 70.2
CDE05G2915 Ceratophyllum demersum HOM05D000290 ORTHO05D002418 2.6e-14 82.4 47 70.2
ClCG01G019260 Citrullus lanatus HOM05D000290 ORTHO05D002418 2.6e-14 82.4 47 70.2
Haze_25028 Corylus avellana HOM05D000290 ORTHO05D002418 2.6e-14 82.4 47 72.3
Aqoxy6G00498 Aquilegia oxysepala HOM05D000290 ORTHO05D002418 3.4e-14 82.0 47 70.2
CiPaw.03G135100 Carya illinoinensis HOM05D000290 ORTHO05D002418 3.4e-14 82.0 47 68.1
Duzib147G0442 Durio zibethinus HOM05D000290 ORTHO05D002418 3.4e-14 82.0 47 72.3
Glyma.06G145700 Glycine max HOM05D000290 ORTHO05D002418 3.4e-14 82.0 47 72.3
Lj2A562G40 Lonicera japonica HOM05D000290 ORTHO05D002418 3.4e-14 82.0 47 70.2
Lalb_Chr13g0296171 Lupinus albus HOM05D000290 ORTHO05D002418 3.4e-14 82.0 49 69.4
Mapoly0001s0423 Marchantia polymorpha HOM05D000290 ORTHO05D002418 3.4e-14 82.0 47 72.3
Prupe.6G175300 Prunus persica HOM05D000290 ORTHO05D002418 3.4e-14 82.0 47 72.3
Hund03547 Selenicereus undatus HOM05D000290 ORTHO05D002418 3.4e-14 82.0 47 70.2
arahy.Tifrunner.gnm1.ann1.T0HPDF Arachis hypogaea HOM05D000290 ORTHO05D002418 4.5e-14 81.6 47 70.2
Gohir.A02G133800 Gossypium hirsutum HOM05D000290 ORTHO05D002418 4.5e-14 81.6 47 70.2
Gohir.D03G045200 Gossypium hirsutum HOM05D000290 ORTHO05D002418 4.5e-14 81.6 47 70.2
Gorai.003G046300 Gossypium raimondii HOM05D000290 ORTHO05D002418 4.5e-14 81.6 47 70.2
unitig_0.g1736 Utricularia gibba HOM05D000290 ORTHO05D002418 4.5e-14 81.6 47 70.2
Actinidia28888 Actinidia chinensis HOM05D000290 ORTHO05D026430 5.9e-14 81.3 47 68.1
Nn5g28931 Nelumbo nucifera HOM05D000290 ORTHO05D002418 5.9e-14 81.3 47 68.1
Pp3c15_3930 Physcomitrium patens HOM05D000290 ORTHO05D002418 5.9e-14 81.3 83 50.6
Ca_16887_v3 Cicer arietinum L. HOM05D000290 ORTHO05D002418 7.7e-14 80.9 47 68.1
Ciclev10024947m.g Citrus clementina HOM05D000290 ORTHO05D002418 7.7e-14 80.9 47 68.1
Glyma.04G220200 Glycine max HOM05D000290 ORTHO05D002418 7.7e-14 80.9 45 73.3
Os02g0575500 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D002418 7.7e-14 80.9 45 71.1
PGR004G2785 Punica granatum HOM05D000290 ORTHO05D002418 7.7e-14 80.9 47 68.1
QL06p032420 Quercus lobata HOM05D000290 ORTHO05D002418 7.7e-14 80.9 47 68.1
Thecc.01G110800 Theobroma cacao HOM05D000290 ORTHO05D002418 7.7e-14 80.9 45 71.1
GSVIVG01022210001 Vitis vinifera HOM05D000290 ORTHO05D002418 7.7e-14 80.9 47 68.1
Dinv19505 Davidia involucrata HOM05D000290 ORTHO05D002418 1.0e-13 80.5 47 68.1
Dinv42708 Davidia involucrata HOM05D000290 ORTHO05D002418 1.0e-13 80.5 47 66.0
Thhalv10003690m.g Eutrema salsugineum HOM05D000290 ORTHO05D002418 1.0e-13 80.5 47 68.1
Manes.12G141200 Manihot esculenta HOM05D000290 ORTHO05D002418 1.0e-13 80.5 47 68.1
FvH4_1g22080 Fragaria vesca HOM05D000290 ORTHO05D002418 1.3e-13 80.1 47 70.2
Lj1g0021046 Lotus japonicus HOM05D000290 ORTHO05D002418 1.3e-13 80.1 47 68.1
Sp2g28020 Schrenkiella parvula HOM05D000290 ORTHO05D002418 1.3e-13 80.1 47 68.1
THA.LOC104799212 Tarenaya hassleriana HOM05D000290 ORTHO05D002418 1.3e-13 80.1 47 68.1
Sabra05G0068300 Salix brachista HOM05D000290 ORTHO05D002418 1.7e-13 79.7 47 68.1
SalBow6G4085 Salvia bowleyana HOM05D000290 ORTHO05D002418 1.7e-13 79.7 47 66.0
Sed0011702 Sechium edule HOM05D000290 ORTHO05D002418 1.7e-13 79.7 47 68.1
TPR.G2223 Trifolium pratense HOM05D000290 ORTHO05D002418 1.7e-13 79.7 47 68.1
AT5G64940 Arabidopsis thaliana HOM05D000290 ORTHO05D002418 2.2e-13 79.3 47 66.0
Cpa.g.sc100.6 Carica papaya HOM05D000290 ORTHO05D026430 2.2e-13 79.3 45 68.9
Ca_17701_v3 Cicer arietinum L. HOM05D000290 ORTHO05D002418 2.2e-13 79.3 47 68.1
Eucgr.H04831 Eucalyptus grandis HOM05D000290 ORTHO05D002418 2.2e-13 79.3 47 66.0
Lalb_Chr12g0203571 Lupinus albus HOM05D000290 ORTHO05D002418 2.2e-13 79.3 49 65.3
Medtr8g091710 Medicago truncatula HOM05D000290 ORTHO05D002418 2.2e-13 79.3 47 68.1
HPP92_016464 Vanilla planifolia HOM05D000290 ORTHO05D002418 2.2e-13 79.3 45 71.1
HPP92_027145 Vanilla planifolia HOM05D000290 ORTHO05D002418 2.2e-13 79.3 45 71.1
Aa31LG1G17030 Aethionema arabicum HOM05D000290 ORTHO05D002418 2.9e-13 79.0 47 66.0
MSTRG.3805 Avicennia marina HOM05D000290 ORTHO05D002418 2.9e-13 79.0 45 71.1
EL10Ac6g14732 Beta vulgaris HOM05D000290 ORTHO05D002418 2.9e-13 79.0 47 66.0
BcaC01g02725 Brassica carinata HOM05D000290 ORTHO05D002418 2.9e-13 79.0 47 68.1
C03p61250 Brassica napus HOM05D000290 ORTHO05D002418 2.9e-13 79.0 47 68.1
BolC3t18386H Brassica oleracea HOM05D000290 ORTHO05D002418 2.9e-13 79.0 47 68.1
AUR62016263 Chenopodium quinoa HOM05D000290 ORTHO05D002418 2.9e-13 79.0 47 66.0
Lj4g0021892 Lotus japonicus HOM05D000290 ORTHO05D002418 2.9e-13 79.0 47 66.0
MD01G1017900 Malus domestica HOM05D000290 ORTHO05D002418 2.9e-13 79.0 50 66.0
CARHR293830 Cardamine hirsuta HOM05D000290 ORTHO05D002418 3.8e-13 78.6 47 66.0
AUR62003319 Chenopodium quinoa HOM05D000290 ORTHO05D002418 3.8e-13 78.6 47 66.0
Pp3c9_4350 Physcomitrium patens HOM05D000290 ORTHO05D002418 3.8e-13 78.6 45 75.6
DCAR_011445 Daucus carota HOM05D000290 ORTHO05D002418 5.0e-13 78.2 45 66.7
FAN19G1951 Fragaria x ananassa HOM05D000290 ORTHO05D002418 5.0e-13 78.2 47 68.1
Cc07_g16030 Coffea canephora HOM05D000290 ORTHO05D002418 6.5e-13 77.8 47 63.8
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 6.5e-13 77.8 47 68.1
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 6.5e-13 77.8 47 68.1
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 6.5e-13 77.8 47 68.1
Glyma.05G183100 Glycine max HOM05D000290 ORTHO05D002418 6.5e-13 77.8 47 63.8
Glyma.08G140900 Glycine max HOM05D000290 ORTHO05D002418 6.5e-13 77.8 47 63.8
Phvul.009G140366 Phaseolus vulgaris HOM05D000290 ORTHO05D002418 6.5e-13 77.8 47 66.0
RcHm_v2.0_Chr2g0116161 Rosa chinensis HOM05D000290 ORTHO05D002418 6.5e-13 77.8 47 68.1
VMungo0251G3264 Vigna mungo HOM05D000290 ORTHO05D002418 6.5e-13 77.8 47 63.8
AagrBONN_evm.TU.Sc2ySwM_344.1524 Anthoceros agrestis HOM05D000290 ORTHO05D002418 1.1e-12 77.0 45 68.9
Phvul.002G264200 Phaseolus vulgaris HOM05D000290 ORTHO05D002418 1.1e-12 77.0 47 63.8
Potri.005G083200 Populus trichocarpa HOM05D000290 ORTHO05D002418 1.1e-12 77.0 45 66.7
BcaB02g09843 Brassica carinata HOM05D000290 ORTHO05D002418 1.9e-12 76.3 47 63.8
A06p31730 Brassica napus HOM05D000290 ORTHO05D002418 2.5e-12 75.9 45 66.7
BraA06t26106Z Brassica rapa HOM05D000290 ORTHO05D002418 2.5e-12 75.9 45 66.7
Sc16g0004190 Simmondsia chinensis HOM05D000290 ORTHO05D002418 1.2e-11 73.6 47 61.7
Phvul.002G315800 Phaseolus vulgaris HOM05D000290 ORTHO05D026430 6.1e-11 71.2 47 59.6
SMO361G0768 Selaginella moellendorffii HOM05D000290 ORTHO05D002418 7.9e-11 70.9 47 61.7
CBR_g4041 Chara braunii HOM05D000290 ORTHO05D002418 6.7e-10 67.8 47 57.4


User provided reference genes

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