Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 5.6e-127 457.6 227 100.0
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.9e-43 179.5 156 51.9
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.2e-38 163.3 194 45.4
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.8e-37 160.2 182 45.6
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 3.1e-37 159.5 180 47.8
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 4.1e-37 159.1 194 44.8
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.2e-36 157.5 184 46.7
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.2e-36 157.5 190 45.3
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.6e-36 157.1 179 45.8
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.0e-36 156.8 179 46.4
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.6e-36 156.4 197 41.6
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 5.9e-36 155.2 191 45.0
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 5.9e-36 155.2 211 41.7
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.0e-35 154.5 192 44.8
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.0e-35 154.5 190 44.7
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 2.9e-35 152.9 191 45.5
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.9e-35 152.9 200 44.5
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.9e-35 152.9 200 44.5
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 2.9e-35 152.9 199 43.7
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 8.5e-35 151.4 184 46.2
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.5e-34 150.6 194 41.8
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 1.9e-34 150.2 193 45.6
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 3.2e-34 149.4 187 44.9
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.2e-34 149.4 201 41.8
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 4.2e-34 149.1 201 42.8
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 7.2e-34 148.3 196 42.9
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 9.4e-34 147.9 193 45.6
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 9.4e-34 147.9 199 42.7
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.2e-33 147.5 197 42.1
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.6e-33 147.1 225 38.2
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 2.1e-33 146.7 187 43.9
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 2.1e-33 146.7 205 40.0
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 2.1e-33 146.7 200 40.5
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 2.7e-33 146.4 188 44.7
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 3.6e-33 146.0 191 43.5
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 3.6e-33 146.0 205 40.5
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 3.6e-33 146.0 203 42.9
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.6e-33 146.0 194 44.8
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 3.6e-33 146.0 193 45.6
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 4.7e-33 145.6 219 38.8
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 4.7e-33 145.6 162 48.1
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 6.1e-33 145.2 185 43.8
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 6.1e-33 145.2 201 45.3
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 8.0e-33 144.8 187 42.2
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 8.0e-33 144.8 181 46.4
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.0e-32 144.4 206 43.2
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.0e-32 144.4 205 41.0
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 1.0e-32 144.4 187 43.3
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.4e-32 144.1 195 44.6
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 1.4e-32 144.1 186 46.2
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.8e-32 143.7 196 42.3
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.8e-32 143.7 196 42.3
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 2.3e-32 143.3 205 41.0
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.0e-32 142.9 200 40.5
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 4.0e-32 142.5 193 42.5
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 4.0e-32 142.5 202 42.1
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 4.0e-32 142.5 193 44.6
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 4.0e-32 142.5 162 47.5
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 6.8e-32 141.7 202 38.1
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 8.8e-32 141.4 194 41.8
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.2e-31 141.0 207 38.2
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.2e-31 141.0 186 42.5
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-31 141.0 199 44.2
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.2e-31 141.0 199 44.2
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.5e-31 140.6 194 41.8
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.0e-31 140.2 193 43.5
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.6e-31 139.8 142 46.5
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 3.4e-31 139.4 143 46.9
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.4e-31 139.4 143 46.9
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.4e-31 139.0 193 44.0
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 7.5e-31 138.3 205 42.0
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 7.5e-31 138.3 199 40.7
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 7.5e-31 138.3 199 40.2
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 9.8e-31 137.9 201 40.8
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 9.8e-31 137.9 199 43.7
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 1.3e-30 137.5 194 43.8
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.3e-30 137.5 193 44.0
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.7e-30 137.1 205 41.0
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.7e-30 137.1 201 38.8
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 2.2e-30 136.7 121 53.7
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 2.2e-30 136.7 198 41.9
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 2.2e-30 136.7 149 48.3
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 2.2e-30 136.7 146 46.6
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 2.8e-30 136.3 224 40.6
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 2.8e-30 136.3 209 39.7
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 3.7e-30 136.0 211 40.3
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 3.7e-30 136.0 192 40.6
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 4.8e-30 135.6 192 40.6
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 6.3e-30 135.2 199 40.7
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 6.3e-30 135.2 202 39.6
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 8.3e-30 134.8 205 43.4
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 8.3e-30 134.8 144 47.9
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 8.3e-30 134.8 210 40.0
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.1e-29 134.4 202 40.1
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.4e-29 134.0 190 40.5
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.4e-29 134.0 140 46.4
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.4e-29 134.0 195 43.6
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.8e-29 133.7 190 41.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.8e-29 133.7 203 38.9
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 1.8e-29 133.7 181 44.8
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.4e-29 133.3 162 42.6
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 4.1e-29 132.5 199 41.7
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 4.1e-29 132.5 185 42.7
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.1e-29 132.5 149 46.3
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 5.4e-29 132.1 208 39.9
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 7.0e-29 131.7 152 48.0
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 1.2e-28 131.0 141 46.1
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.0e-28 130.2 143 45.5
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 2.7e-28 129.8 143 44.8
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 3.5e-28 129.4 207 41.1
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 5.9e-28 128.6 142 45.1
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 7.7e-28 128.3 164 41.5
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 1.3e-27 127.5 179 43.0
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 2.9e-27 126.3 161 37.3
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 3.8e-27 125.9 132 47.7
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 3.8e-27 125.9 212 36.3
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.1e-26 124.4 150 42.0
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 1.5e-26 124.0 137 45.3
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 1.5e-26 124.0 162 37.7
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.9e-26 123.6 134 44.8
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.5e-26 123.2 97 55.7
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 7.2e-26 121.7 153 46.4
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 7.2e-26 121.7 199 37.7
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 2.1e-25 120.2 137 48.2
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 8.8e-24 114.8 93 53.8
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 8.8e-24 114.8 132 45.5
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.5e-23 114.0 84 53.6
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 5.7e-23 112.1 204 35.8
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 3.7e-22 109.4 186 34.9
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 4.9e-22 109.0 87 54.0
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 6.3e-22 108.6 97 51.5
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 6.3e-22 108.6 126 41.3
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.1e-21 107.8 98 51.0
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.4e-21 106.7 129 38.0
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 4.1e-21 105.9 135 38.5
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.2e-20 104.4 93 51.6
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.2e-20 104.4 184 37.0
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 2.0e-20 103.6 78 51.3
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 2.7e-20 103.2 71 64.8
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 3.5e-20 102.8 116 47.4
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.0e-19 99.0 129 36.4
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 8.6e-19 98.2 78 52.6
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.0e-15 87.0 83 47.0
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.1e-13 81.3 77 49.4
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.2e-12 77.8 87 47.1
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 2.0e-12 77.0 92 42.4
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.7e-12 76.6 116 39.7
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.7e-11 73.9 111 38.7
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.3e-11 73.6 116 38.8
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 8.6e-11 71.6 186 31.7
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 3.1e-08 63.2 74 45.9
SEGI_29592 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 2.2e-06 57.0 46 60.9


User provided reference genes

Program Settings