Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08492 Sequoiadendron giganteum HOM05D007481 ORTHO05D009444 5.9e-166 587.4 287 100.0
Nn2g13707 Nelumbo nucifera HOM05D007481 ORTHO05D009444 4.0e-82 308.9 285 57.2
Prupe.6G277100 Prunus persica HOM05D007481 ORTHO05D009444 4.0e-82 308.9 279 57.3
Psat7g244960 Pisum sativum HOM05D007481 ORTHO05D009444 2.6e-81 306.2 280 53.6
Thecc.05G016400 Theobroma cacao HOM05D007481 ORTHO05D009444 6.4e-80 301.6 285 53.0
Lalb_Chr07g0193571 Lupinus albus HOM05D007481 ORTHO05D009444 1.9e-79 300.1 280 53.6
PGR031G3607 Punica granatum HOM05D007481 ORTHO05D009444 2.5e-79 299.7 284 54.9
Medtr4g012440 Medicago truncatula HOM05D007481 ORTHO05D009444 3.2e-79 299.3 280 53.6
GSVIVG01033961001 Vitis vinifera HOM05D007481 ORTHO05D009444 3.2e-79 299.3 281 54.4
Actinidia11588 Actinidia chinensis HOM05D007481 ORTHO05D009444 4.2e-79 298.9 280 56.1
TWI74G0365 Tripterygium wilfordii HOM05D007481 ORTHO05D009444 4.2e-79 298.9 281 55.9
FAN05G5358 Fragaria x ananassa HOM05D007481 ORTHO05D009444 1.2e-78 297.4 279 55.2
Aqoxy2G00902 Aquilegia oxysepala HOM05D007481 ORTHO05D009444 1.6e-78 297.0 287 52.3
arahy.Tifrunner.gnm1.ann1.7RHW31 Arachis hypogaea HOM05D007481 ORTHO05D009444 1.6e-78 297.0 279 54.8
COL.COLO4_14539 Corchorus olitorius HOM05D007481 ORTHO05D009444 1.6e-78 297.0 284 54.2
Potri.006G100100 Populus trichocarpa HOM05D007481 ORTHO05D009444 1.6e-78 297.0 280 54.6
Dinv04699 Davidia involucrata HOM05D007481 ORTHO05D009444 2.1e-78 296.6 286 53.8
Aa31LG1G23100 Aethionema arabicum HOM05D007481 ORTHO05D009444 2.7e-78 296.2 290 53.1
C02p00150 Brassica napus HOM05D007481 ORTHO05D009444 2.7e-78 296.2 282 53.2
MD04G1152000 Malus domestica HOM05D007481 ORTHO05D009444 3.5e-78 295.8 279 55.9
RcHm_v2.0_Chr3g0463171 Rosa chinensis HOM05D007481 ORTHO05D009444 3.5e-78 295.8 279 54.8
Manes.09G104600 Manihot esculenta HOM05D007481 ORTHO05D009444 4.6e-78 295.4 279 54.8
Nitab4.5_0003666g0020 Nicotiana tabacum HOM05D007481 ORTHO05D009444 7.9e-78 294.7 281 53.7
BolC2t06012H Brassica oleracea HOM05D007481 ORTHO05D009444 1.0e-77 294.3 282 52.8
Phvul.010G001400 Phaseolus vulgaris HOM05D007481 ORTHO05D009444 1.0e-77 294.3 281 53.0
BcaB05g21923 Brassica carinata HOM05D007481 ORTHO05D009444 1.3e-77 293.9 282 52.5
CiPaw.10G156500 Carya illinoinensis HOM05D007481 ORTHO05D009444 1.3e-77 293.9 279 55.6
Glyma.03G058200 Glycine max HOM05D007481 ORTHO05D009444 1.3e-77 293.9 279 53.0
BraA02t04685Z Brassica rapa HOM05D007481 ORTHO05D009444 1.8e-77 293.5 282 53.5
Gohir.D09G160700 Gossypium hirsutum HOM05D007481 ORTHO05D009444 2.3e-77 293.1 280 55.0
QL07p035708 Quercus lobata HOM05D007481 ORTHO05D009444 2.3e-77 293.1 279 54.5
Carub.0006s0036 Capsella rubella HOM05D007481 ORTHO05D009444 3.0e-77 292.7 285 53.0
TPR.G13336 Trifolium pratense HOM05D007481 ORTHO05D009444 3.9e-77 292.4 285 51.9
BcaC03g13078 Brassica carinata HOM05D007481 ORTHO05D009444 5.1e-77 292.0 281 52.3
CARHR211840 Cardamine hirsuta HOM05D007481 ORTHO05D009444 5.1e-77 292.0 282 54.6
ECA248G3524 Erigeron canadensis HOM05D007481 ORTHO05D009444 5.1e-77 292.0 280 55.0
Thhalv10014504m.g Eutrema salsugineum HOM05D007481 ORTHO05D009444 6.7e-77 291.6 282 53.5
Cc06_g01380 Coffea canephora HOM05D007481 ORTHO05D009444 8.7e-77 291.2 279 53.8
Sopen10g034630 Solanum pennellii HOM05D007481 ORTHO05D009444 8.7e-77 291.2 279 54.8
Solyc10g085160.2 Solanum lycopersicum HOM05D007481 ORTHO05D009444 1.1e-76 290.8 279 54.8
CSS0016102 Camellia sinensis var. sinensis HOM05D007481 ORTHO05D009444 3.3e-76 289.3 280 54.6
Ca_20231_v3 Cicer arietinum L. HOM05D007481 ORTHO05D009444 3.3e-76 289.3 279 52.7
PSO801G0715 Papaver somniferum HOM05D007481 ORTHO05D009444 3.3e-76 289.3 280 53.6
Gorai.006G182400 Gossypium raimondii HOM05D007481 ORTHO05D009444 4.3e-76 288.9 286 54.9
AL6G10600 Arabidopsis lyrata HOM05D007481 ORTHO05D009444 5.6e-76 288.5 285 53.0
Eucgr.B02817 Eucalyptus grandis HOM05D007481 ORTHO05D009444 7.4e-76 288.1 280 52.5
Sp6g40760 Schrenkiella parvula HOM05D007481 ORTHO05D009444 7.4e-76 288.1 281 54.1
Peaxi162Scf00009g01813 Petunia axillaris HOM05D007481 ORTHO05D009444 1.6e-75 287.0 282 53.9
Sabra06G0076900 Salix brachista HOM05D007481 ORTHO05D009444 1.6e-75 287.0 280 52.5
AT5G01470 Arabidopsis thaliana HOM05D007481 ORTHO05D009444 2.1e-75 286.6 284 52.5
CAN.G616.2 Capsicum annuum HOM05D007481 ORTHO05D009444 2.1e-75 286.6 281 53.4
Ciclev10012584m.g Citrus clementina HOM05D007481 ORTHO05D009444 2.1e-75 286.6 282 53.5
HanXRQChr01g0007111 Helianthus annuus HOM05D007481 ORTHO05D009444 2.1e-75 286.6 285 52.3
Lj3g0018029 Lotus japonicus HOM05D007481 ORTHO05D009444 2.1e-75 286.6 279 53.0
MSTRG.10219 Avicennia marina HOM05D007481 ORTHO05D009444 2.8e-75 286.2 285 53.3
CANSAT35G1044 Cannabis sativa HOM05D007481 ORTHO05D009444 3.7e-75 285.8 281 50.5
Sed0020862 Sechium edule HOM05D007481 ORTHO05D009444 3.7e-75 285.8 279 52.3
PGSC0003DMG400011097 Solanum tuberosum HOM05D007481 ORTHO05D009444 3.7e-75 285.8 280 53.6
FAN02G0465 Fragaria x ananassa HOM05D007481 ORTHO05D009444 4.8e-75 285.4 275 55.3
Nitab4.5_0003024g0060 Nicotiana tabacum HOM05D007481 ORTHO05D009444 6.2e-75 285.0 295 51.2
THA.LOC104816191 Tarenaya hassleriana HOM05D007481 ORTHO05D009444 1.4e-74 283.9 284 52.1
PSO339G5056 Papaver somniferum HOM05D007481 ORTHO05D009444 1.8e-74 283.5 280 53.9
Cfa017210 Carpinus fangiana HOM05D007481 ORTHO05D009444 2.4e-74 283.1 257 55.3
ClCG04G007010 Citrullus lanatus HOM05D007481 ORTHO05D009444 4.0e-74 282.3 280 51.4
CsaV3_4G026270 Cucumis sativus L. HOM05D007481 ORTHO05D009444 5.3e-74 282.0 280 51.4
Mapoly0103s0024 Marchantia polymorpha HOM05D007481 ORTHO05D009444 1.2e-73 280.8 278 52.9
Pp3c17_21930 Physcomitrium patens HOM05D007481 ORTHO05D009444 1.2e-73 280.8 282 51.8
Migut.L02012 Erythranthe guttata HOM05D007481 ORTHO05D009444 2.0e-73 280.0 282 52.1
Sc07g0006570 Simmondsia chinensis HOM05D007481 ORTHO05D009444 2.0e-73 280.0 280 53.2
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.7e-72 276.9 299 47.8
arahy.Tifrunner.gnm1.ann1.6XTR6T Arachis hypogaea HOM05D007481 ORTHO05D009444 1.7e-72 276.9 279 52.3
ATR0618G339 Amborella trichopoda HOM05D007481 ORTHO05D009444 8.4e-72 274.6 280 50.4
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 2.5e-71 273.1 283 50.5
FAN14G0098 Fragaria x ananassa HOM05D007481 ORTHO05D009444 2.7e-70 269.6 339 45.1
SMO119G0350 Selaginella moellendorffii HOM05D007481 ORTHO05D009444 6.7e-69 265.0 246 52.8
Lj3A953G52 Lonicera japonica HOM05D007481 ORTHO05D009444 1.9e-68 263.5 281 49.8
Zm00001eb063270 Zea mays HOM05D007481 ORTHO05D009444 1.9e-68 263.5 291 48.5
FAN09G2325 Fragaria x ananassa HOM05D007481 ORTHO05D009444 9.7e-68 261.2 279 51.3
Os03g0826700 Oryza sativa ssp. japonica HOM05D007481 ORTHO05D009444 9.7e-68 261.2 280 51.4
Duzib093G0021 Durio zibethinus HOM05D007481 ORTHO05D009444 1.4e-66 257.3 244 52.5
unitig_736.g22787 Utricularia gibba HOM05D007481 ORTHO05D009444 5.3e-66 255.4 272 48.9
Hund11009 Selenicereus undatus HOM05D007481 ORTHO05D009444 6.9e-66 255.0 309 47.2
Gohir.A09G165100 Gossypium hirsutum HOM05D007481 ORTHO05D009444 3.8e-64 249.2 196 62.8
vmacro20262 Vaccinium macrocarpon HOM05D007481 ORTHO05D009444 5.0e-64 248.8 287 49.5
SalBow4G1731 Salvia bowleyana HOM05D007481 ORTHO05D009444 4.2e-63 245.7 192 61.5
AagrBONN_evm.TU.Sc2ySwM_228.1780 Anthoceros agrestis HOM05D007481 ORTHO05D009444 1.2e-62 244.2 239 52.3
FvH4_6g11480 Fragaria vesca HOM05D007481 ORTHO05D009444 2.1e-62 243.4 212 57.5
CDE02G3625 Ceratophyllum demersum HOM05D007481 ORTHO05D009444 6.1e-62 241.9 183 64.5
Lsat_1_v5_gn_5_149561 Lactuca sativa HOM05D007481 ORTHO05D009444 8.8e-61 238.0 280 47.1
CBR_g4113 Chara braunii HOM05D007481 ORTHO05D009444 2.5e-60 236.5 297 46.1
MELO3C003292.2 Cucumis melo HOM05D007481 ORTHO05D009444 4.3e-60 235.7 178 61.2
Rhsim05G0214800 Rhododendron simsii HOM05D007481 ORTHO05D009444 4.8e-59 232.3 338 40.8
TAR633G1799 Trochodendron aralioides HOM05D007481 ORTHO05D009444 4.1e-58 229.2 282 46.1
Haze_20985 Corylus avellana HOM05D007481 ORTHO05D009444 2.1e-54 216.9 285 44.9
Cpa.g.sc11.154 Carica papaya HOM05D007481 ORTHO05D009444 1.4e-50 204.1 284 40.1
FAN14G2270 Fragaria x ananassa HOM05D000872 ORTHO05D000777 6.1e-46 188.7 326 39.6
HPP92_003771 Vanilla planifolia HOM05D007481 ORTHO05D009444 3.0e-45 186.4 181 53.6
MBI14_g30737_MAGBIO Magnolia biondii HOM05D007481 ORTHO05D009444 3.3e-44 183.0 290 37.9
VMungo0331G0457 Vigna mungo HOM05D007481 ORTHO05D009444 3.1e-42 176.4 136 60.3
DCAR_015418 Daucus carota HOM05D007481 ORTHO05D009444 2.6e-41 173.3 139 59.7
Atru.chr8.2241 Acer truncatum HOM05D007481 ORTHO05D009444 6.1e-30 135.6 149 47.7
EL10Ac5g12562 Beta vulgaris HOM05D007481 ORTHO05D009444 6.8e-21 105.5 96 53.1
Oeu006297.1 Olea europaea HOM05D007481 ORTHO05D009444 1.8e-18 97.4 89 53.9
Eucgr.B02818 Eucalyptus grandis HOM05D007481 ORTHO05D009444 1.8e-13 80.9 121 42.1
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 5.0e-08 62.8 122 32.8
Hma1.2p1_0258F.1_g104040 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 6.6e-08 62.4 129 27.9
Hma1.2p1_0258F.1_g104050 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 6.6e-08 62.4 129 27.9
AUR62030437 Chenopodium quinoa HOM05D007481 ORTHO05D009444 8.6e-08 62.0 37 67.6
Lj4A220G94 Lonicera japonica HOM05D006469 ORTHO05D008034 1.1e-07 61.6 132 30.3
Nn6g32040 Nelumbo nucifera HOM05D006469 ORTHO05D008034 1.1e-07 61.6 174 24.7
PGSC0003DMG402022530 Solanum tuberosum HOM05D006469 ORTHO05D008034 1.9e-07 60.8 134 29.1
CANSAT25G3534 Cannabis sativa HOM05D006469 ORTHO05D008034 3.3e-07 60.1 170 27.6
FAN19G0062 Fragaria x ananassa HOM05D005677 ORTHO05D006966 4.3e-07 59.7 200 25.5
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 4.3e-07 59.7 134 26.9
Ciclev10026134m.g Citrus clementina HOM05D006469 ORTHO05D008034 9.5e-07 58.5 161 24.8
Hma1.2p1_0224F.1_g094650 Hydrangea macrophylla HOM05D005677 ORTHO05D006966 9.5e-07 58.5 189 28.0
CAN.G1817.1 Capsicum annuum HOM05D006469 ORTHO05D008034 1.2e-06 58.2 130 26.9
AUR62004051 Chenopodium quinoa HOM05D005677 ORTHO05D006966 1.2e-06 58.2 130 30.0
Potri.007G057000 Populus trichocarpa HOM05D006469 ORTHO05D008034 1.2e-06 58.2 175 24.0
QL06p050760 Quercus lobata HOM05D006469 ORTHO05D008034 1.2e-06 58.2 176 26.7
QL11p035074 Quercus lobata HOM05D006469 ORTHO05D008034 1.2e-06 58.2 176 26.7
Haze_15089 Corylus avellana HOM05D005677 ORTHO05D006966 1.6e-06 57.8 195 26.7
FvH4_1g13310 Fragaria vesca HOM05D005677 ORTHO05D006966 1.6e-06 57.8 200 24.5
CsaV3_6G047220 Cucumis sativus L. HOM05D006469 ORTHO05D008034 2.1e-06 57.4 121 30.6
ECA232G2278 Erigeron canadensis HOM05D005677 ORTHO05D006966 2.1e-06 57.4 139 30.9
Pp3c26_2100 Physcomitrium patens HOM05D001602 ORTHO05D001470 2.8e-06 57.0 125 28.0
Atru.chr3.815 Acer truncatum HOM05D006469 ORTHO05D008034 3.6e-06 56.6 173 24.3
FAN26G2780 Fragaria x ananassa HOM05D005677 ORTHO05D006966 3.6e-06 56.6 200 24.5
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 3.6e-06 56.6 120 28.3
MSTRG.3610 Avicennia marina HOM05D006469 ORTHO05D008034 4.7e-06 56.2 132 28.0
CANSAT25G3476 Cannabis sativa HOM05D006469 ORTHO05D008034 4.7e-06 56.2 167 26.9
HanXRQChr09g0261461 Helianthus annuus HOM05D005677 ORTHO05D006966 4.7e-06 56.2 142 31.0
Lsat_1_v5_gn_4_152101 Lactuca sativa HOM05D005677 ORTHO05D006966 4.7e-06 56.2 138 30.4
Oeu041446.1 Olea europaea HOM05D005677 ORTHO05D006966 6.2e-06 55.8 155 27.1
FAN23G0294 Fragaria x ananassa HOM05D005677 ORTHO05D006966 8.0e-06 55.5 164 28.0
Lsat_1_v5_gn_4_71781 Lactuca sativa HOM05D001920 ORTHO05D004895 8.0e-06 55.5 161 26.1
Zm00001eb229980 Zea mays HOM05D006745 ORTHO05D008449 8.0e-06 55.5 131 29.0


User provided reference genes

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