Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08377 Sequoiadendron giganteum HOM05D002286 ORTHO05D385319 2.1e-169 599.0 304 100.0
SEGI_14265 Sequoiadendron giganteum HOM05D000109 ORTHO05D000520 9.3e-53 211.5 136 80.1
SEGI_30731 Sequoiadendron giganteum HOM05D000221 ORTHO05D386789 1.0e-38 164.9 100 84.0
SEGI_34936 Sequoiadendron giganteum HOM05D002286 ORTHO05D000006 6.3e-25 119.0 123 58.5
SEGI_11495 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 4.4e-18 96.3 74 71.6
SEGI_02493 Sequoiadendron giganteum HOM05D002286 ORTHO05D002468 2.4e-16 90.5 60 78.3
SEGI_26160 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 5.5e-13 79.3 46 82.6
Peaxi162Scf00015g00058 Petunia axillaris HOM05D002286 ORTHO05D002468 2.0e-10 70.9 60 60.0
Dinv30550 Davidia involucrata HOM05D002286 ORTHO05D004844 4.4e-10 69.7 60 58.3
Solyc03g119930.1 Solanum lycopersicum HOM05D002286 ORTHO05D002468 5.7e-10 69.3 60 60.0
Sopen03g038810 Solanum pennellii HOM05D002286 ORTHO05D002468 5.7e-10 69.3 60 60.0
PGSC0003DMG400005760 Solanum tuberosum HOM05D002286 ORTHO05D002468 5.7e-10 69.3 60 60.0
Nn1g07804 Nelumbo nucifera HOM05D002286 ORTHO05D002468 9.7e-10 68.6 60 55.0
Nn1g07809 Nelumbo nucifera HOM05D002286 ORTHO05D002468 9.7e-10 68.6 60 55.0
CAN.G438.97 Capsicum annuum HOM05D002286 ORTHO05D002468 1.3e-09 68.2 60 58.3
Aqoxy7G01952 Aquilegia oxysepala HOM05D002286 ORTHO05D002468 1.7e-09 67.8 61 59.0
Nitab4.5_0004817g0020 Nicotiana tabacum HOM05D002286 ORTHO05D002468 1.7e-09 67.8 60 58.3
Oeu001147.3 Olea europaea HOM05D002286 ORTHO05D002468 1.7e-09 67.8 60 58.3
GSVIVG01035740001 Vitis vinifera HOM05D002286 ORTHO05D002468 1.7e-09 67.8 60 56.7
ClCG09G002510 Citrullus lanatus HOM05D002286 ORTHO05D002468 2.2e-09 67.4 60 55.0
Prupe.3G077200 Prunus persica HOM05D002286 ORTHO05D002468 2.2e-09 67.4 60 56.7
Nn3g19942 Nelumbo nucifera HOM05D002286 ORTHO05D002468 2.8e-09 67.0 60 55.0
CSS0038238 Camellia sinensis var. sinensis HOM05D002286 ORTHO05D002468 3.7e-09 66.6 60 58.3
CSS0042482 Camellia sinensis var. sinensis HOM05D002286 ORTHO05D002468 3.7e-09 66.6 60 58.3
TAR625G1367 Trochodendron aralioides HOM05D002286 ORTHO05D002468 3.7e-09 66.6 61 59.0
CDE07G0769 Ceratophyllum demersum HOM05D002286 ORTHO05D002468 4.8e-09 66.2 61 57.4
MELO3C023385.2 Cucumis melo HOM05D002286 ORTHO05D002468 4.8e-09 66.2 60 56.7
CsaV3_7G032820 Cucumis sativus L. HOM05D002286 ORTHO05D002468 4.8e-09 66.2 60 56.7
Migut.D01041 Erythranthe guttata HOM05D002286 ORTHO05D002468 4.8e-09 66.2 60 58.3
Nitab4.5_0000410g0320 Nicotiana tabacum HOM05D002286 ORTHO05D002468 4.8e-09 66.2 60 56.7
SGA_v2.0_scaffold279G46823 Striga asiatica HOM05D002286 ORTHO05D002468 4.8e-09 66.2 60 58.3
Ciclev10010241m.g Citrus clementina HOM05D002286 ORTHO05D002468 6.3e-09 65.9 60 60.0
Cc04_g03750 Coffea canephora HOM05D002286 ORTHO05D002468 6.3e-09 65.9 60 56.7
RcHm_v2.0_Chr2g0137081 Rosa chinensis HOM05D002286 ORTHO05D002468 6.3e-09 65.9 60 55.0
TAR383G0042 Trochodendron aralioides HOM05D002286 ORTHO05D002468 6.3e-09 65.9 60 55.0
Lj3g0015754 Lotus japonicus HOM05D002286 ORTHO05D002468 8.2e-09 65.5 60 58.3
Medtr4g011600 Medicago truncatula HOM05D002286 ORTHO05D002468 8.2e-09 65.5 60 58.3
PSO386G0049 Papaver somniferum HOM05D002286 ORTHO05D002468 8.2e-09 65.5 61 57.4
PSO724G0501 Papaver somniferum HOM05D002286 ORTHO05D002468 8.2e-09 65.5 61 57.4
Psat4g172720 Pisum sativum HOM05D002286 ORTHO05D002468 8.2e-09 65.5 60 58.3
HPP92_009791 Vanilla planifolia HOM05D002286 ORTHO05D002468 8.2e-09 65.5 58 56.9
Ciclev10025542m.g Citrus clementina HOM05D002286 ORTHO05D002468 1.1e-08 65.1 60 55.0
SalBow2G2293 Salvia bowleyana HOM05D002286 ORTHO05D002468 1.1e-08 65.1 60 55.0
Sed0007547 Sechium edule HOM05D002286 ORTHO05D002468 1.1e-08 65.1 60 55.0
Haze_16485 Corylus avellana HOM05D002286 ORTHO05D002468 1.8e-08 64.3 60 53.3
MBI01_g16631_MAGBIO Magnolia biondii HOM05D002286 ORTHO05D002468 1.8e-08 64.3 60 56.7
SEGI_21023 Sequoiadendron giganteum HOM05D002286 ORTHO05D002468 1.8e-08 64.3 60 58.3
ATR0824G251 Amborella trichopoda HOM05D002286 ORTHO05D002468 2.4e-08 63.9 60 51.7
Glyma.08G208700 Glycine max HOM05D002286 ORTHO05D002468 2.4e-08 63.9 60 56.7
Lalb_Chr25g0279561 Lupinus albus HOM05D002286 ORTHO05D002468 3.1e-08 63.5 60 56.7
Gohir.A10G078000 Gossypium hirsutum HOM05D002286 ORTHO05D002468 4.1e-08 63.2 60 56.7
MBI01_g19674_MAGBIO Magnolia biondii HOM05D002286 ORTHO05D002468 4.1e-08 63.2 60 56.7
PSO135G0873 Papaver somniferum HOM05D002286 ORTHO05D002468 4.1e-08 63.2 61 55.7
Cfa002033 Carpinus fangiana HOM05D002286 ORTHO05D002468 5.3e-08 62.8 60 51.7
Os01g0645900 Oryza sativa ssp. japonica HOM05D002286 ORTHO05D002468 5.3e-08 62.8 60 56.7
PSO063G4464 Papaver somniferum HOM05D002286 ORTHO05D002468 5.3e-08 62.8 61 55.7
PSO782G1481 Papaver somniferum HOM05D002286 ORTHO05D002468 5.3e-08 62.8 61 55.7
SMO169G0098 Selaginella moellendorffii HOM05D002286 ORTHO05D002468 5.3e-08 62.8 61 55.7
THA.LOC104812482 Tarenaya hassleriana HOM05D002286 ORTHO05D002468 5.3e-08 62.8 60 55.0
Gohir.D10G073600 Gossypium hirsutum HOM05D002286 ORTHO05D002468 7.0e-08 62.4 60 56.7
Gorai.011G079400 Gossypium raimondii HOM05D002286 ORTHO05D002468 7.0e-08 62.4 60 56.7
TPR.G38628 Trifolium pratense HOM05D002286 ORTHO05D002468 7.0e-08 62.4 60 56.7
arahy.Tifrunner.gnm1.ann1.WPDD67 Arachis hypogaea HOM05D002286 ORTHO05D002468 9.1e-08 62.0 60 55.0
arahy.Tifrunner.gnm1.ann1.YICS0E Arachis hypogaea HOM05D002286 ORTHO05D002468 9.1e-08 62.0 60 55.0
VMungo0331G1867 Vigna mungo HOM05D002286 ORTHO05D002468 9.1e-08 62.0 60 56.7
Cpa.g.sc10.199 Carica papaya HOM05D002286 ORTHO05D002468 1.2e-07 61.6 60 55.0
Zm00001eb158530 Zea mays HOM05D002286 ORTHO05D002468 1.2e-07 61.6 60 55.0
Potri.006G245900 Populus trichocarpa HOM05D002286 ORTHO05D002468 1.6e-07 61.2 60 53.3
Ca_07171_v3 Cicer arietinum L. HOM05D002286 ORTHO05D002468 2.0e-07 60.8 60 55.0
Duzib235G0902 Durio zibethinus HOM05D002286 ORTHO05D002468 2.0e-07 60.8 60 51.7
Rhsim12G0195100 Rhododendron simsii HOM05D002286 ORTHO05D002468 2.0e-07 60.8 60 51.7
RhsimUnG0009500 Rhododendron simsii HOM05D002286 ORTHO05D002468 2.0e-07 60.8 60 51.7
TWI34G0774 Tripterygium wilfordii HOM05D002286 ORTHO05D002468 2.0e-07 60.8 60 53.3
CiPaw.01G242400 Carya illinoinensis HOM05D002286 ORTHO05D002468 2.7e-07 60.5 60 50.0
Manes.11G049700 Manihot esculenta HOM05D002286 ORTHO05D002468 2.7e-07 60.5 60 51.7
Phvul.010G152700 Phaseolus vulgaris HOM05D002286 ORTHO05D002468 2.7e-07 60.5 60 53.3
Potri.006G246000 Populus trichocarpa HOM05D002286 ORTHO05D002468 2.7e-07 60.5 60 53.3
Thecc.06G077800 Theobroma cacao HOM05D002286 ORTHO05D002468 2.7e-07 60.5 60 53.3
TWI12G0048 Tripterygium wilfordii HOM05D002286 ORTHO05D002468 2.7e-07 60.5 60 53.3
MSTRG.4724 Avicennia marina HOM05D002286 ORTHO05D002468 3.5e-07 60.1 60 51.7
Lj8A335T44 Lonicera japonica HOM05D002286 ORTHO05D002468 3.5e-07 60.1 60 55.0
Peaxi162Scf00003g03332 Petunia axillaris HOM05D002286 ORTHO05D002468 4.5e-07 59.7 60 56.7
Peaxi162Scf01093g00002 Petunia axillaris HOM05D002286 ORTHO05D002468 4.5e-07 59.7 60 56.7
Pp3c2_20160 Physcomitrium patens HOM05D002286 ORTHO05D002468 4.5e-07 59.7 60 51.7
Gohir.D07G029700 Gossypium hirsutum HOM05D002286 ORTHO05D002468 5.9e-07 59.3 60 53.3
Gorai.001G030900 Gossypium raimondii HOM05D002286 ORTHO05D002468 5.9e-07 59.3 60 53.3
Solyc10g084680.1 Solanum lycopersicum HOM05D002286 ORTHO05D002468 5.9e-07 59.3 60 55.0
PGSC0003DMG400011000 Solanum tuberosum HOM05D002286 ORTHO05D002468 5.9e-07 59.3 60 55.0
unitig_62.g23775 Utricularia gibba HOM05D002980 ORTHO05D003421 5.9e-07 59.3 60 51.7
AL2G41190 Arabidopsis lyrata HOM05D002286 ORTHO05D002468 7.7e-07 58.9 60 51.7
AL7G51770 Arabidopsis lyrata HOM05D002286 ORTHO05D002468 7.7e-07 58.9 60 51.7
BcaB02g08694 Brassica carinata HOM05D002286 ORTHO05D002468 7.7e-07 58.9 60 51.7
Carub.0002s0429 Capsella rubella HOM05D002286 ORTHO05D002468 7.7e-07 58.9 60 51.7
Thhalv10019779m.g Eutrema salsugineum HOM05D002286 ORTHO05D002468 7.7e-07 58.9 60 51.7
Manes.11G049600 Manihot esculenta HOM05D002286 ORTHO05D002468 7.7e-07 58.9 60 51.7
PGR031G1478 Punica granatum HOM05D002286 ORTHO05D002468 7.7e-07 58.9 60 50.0
Cpa.g.sc91.3 Carica papaya HOM05D002286 ORTHO05D002468 1.0e-06 58.5 60 53.3
Eucgr.J03028 Eucalyptus grandis HOM05D002286 ORTHO05D002468 1.0e-06 58.5 60 50.0
Gohir.A07G025900 Gossypium hirsutum HOM05D002286 ORTHO05D002468 1.0e-06 58.5 60 53.3
Sopen10g034120 Solanum pennellii HOM05D002286 ORTHO05D002468 1.0e-06 58.5 60 53.3
Atru.chr1.3168 Acer truncatum HOM05D002286 ORTHO05D002468 1.3e-06 58.2 60 51.7
Aa31LG4G590 Aethionema arabicum HOM05D002286 ORTHO05D002468 1.3e-06 58.2 60 51.7
AT1G80310 Arabidopsis thaliana HOM05D002286 ORTHO05D002468 1.3e-06 58.2 60 50.0
A07p45330 Brassica napus HOM05D002286 ORTHO05D002468 1.3e-06 58.2 60 51.7
BraA07t32037Z Brassica rapa HOM05D002286 ORTHO05D002468 1.3e-06 58.2 60 51.7
CARHR291220 Cardamine hirsuta HOM05D002286 ORTHO05D002468 1.3e-06 58.2 60 50.0
COL.COLO4_12856 Corchorus olitorius HOM05D002286 ORTHO05D002468 1.3e-06 58.2 60 53.3
Gohir.D07G029800 Gossypium hirsutum HOM05D002286 ORTHO05D002468 1.3e-06 58.2 58 53.4
Gorai.001G031000 Gossypium raimondii HOM05D002286 ORTHO05D002468 1.3e-06 58.2 58 53.4
Hma1.2p1_0317F.1_g123320 Hydrangea macrophylla HOM05D002286 ORTHO05D002468 1.3e-06 58.2 60 48.3
Hma1.2p1_3026F.1_g331810 Hydrangea macrophylla HOM05D002286 ORTHO05D002468 1.3e-06 58.2 60 48.3
Lsat_1_v5_gn_4_103980 Lactuca sativa HOM05D002286 ORTHO05D002468 1.3e-06 58.2 60 53.3
QL05p026809 Quercus lobata HOM05D002286 ORTHO05D002468 1.3e-06 58.2 62 51.6
Sabra06G0192400 Salix brachista HOM05D002286 ORTHO05D002468 1.3e-06 58.2 60 51.7
Sabra06G0192500 Salix brachista HOM05D002286 ORTHO05D002468 1.3e-06 58.2 60 51.7
Sabra18G0035900 Salix brachista HOM05D002286 ORTHO05D002468 1.3e-06 58.2 60 51.7
Sp5g35500 Schrenkiella parvula HOM05D002286 ORTHO05D002468 1.3e-06 58.2 60 51.7
CANSAT54G0703 Cannabis sativa HOM05D002286 ORTHO05D002468 1.7e-06 57.8 60 55.0
Haze_21634 Corylus avellana HOM05D002286 ORTHO05D002468 1.7e-06 57.8 60 48.3
Dinv30222 Davidia involucrata HOM05D002286 ORTHO05D002468 1.7e-06 57.8 60 55.0
Dinv30223 Davidia involucrata HOM05D002286 ORTHO05D002468 1.7e-06 57.8 60 55.0
ECA232G5015 Erigeron canadensis HOM05D002286 ORTHO05D002468 1.7e-06 57.8 60 53.3
Gohir.D06G048400 Gossypium hirsutum HOM05D002286 ORTHO05D002468 1.7e-06 57.8 60 51.7
Gorai.010G054200 Gossypium raimondii HOM05D002286 ORTHO05D002468 1.7e-06 57.8 60 51.7
Hma1.2p1_0140F.1_g063860 Hydrangea macrophylla HOM05D002286 ORTHO05D002468 1.7e-06 57.8 60 53.3
Hma1.2p1_0140F.1_g063870 Hydrangea macrophylla HOM05D002286 ORTHO05D002468 1.7e-06 57.8 60 53.3
Hma1.2p1_0175F.1_g077326 Hydrangea macrophylla HOM05D002286 ORTHO05D002468 1.7e-06 57.8 60 53.3
QL12p031132 Quercus lobata HOM05D002286 ORTHO05D002468 1.7e-06 57.8 60 53.3
THA.LOC104819892 Tarenaya hassleriana HOM05D002286 ORTHO05D002468 1.7e-06 57.8 60 51.7
Thecc.09G143500 Theobroma cacao HOM05D002286 ORTHO05D002468 1.7e-06 57.8 60 51.7
BcaC08g47578 Brassica carinata HOM05D002286 ORTHO05D002468 2.2e-06 57.4 60 50.0
C06p54180 Brassica napus HOM05D002286 ORTHO05D002468 2.2e-06 57.4 60 50.0
BolC6t40430H Brassica oleracea HOM05D002286 ORTHO05D002468 2.2e-06 57.4 60 50.0
Duzib168G1154 Durio zibethinus HOM05D002286 ORTHO05D002468 2.2e-06 57.4 60 53.3
Gohir.A06G048500 Gossypium hirsutum HOM05D002286 ORTHO05D002468 2.2e-06 57.4 60 51.7
Nitab4.5_0000202g0160 Nicotiana tabacum HOM05D002286 ORTHO05D002468 2.2e-06 57.4 60 53.3
Nitab4.5_0000216g0090 Nicotiana tabacum HOM05D002286 ORTHO05D002468 2.2e-06 57.4 60 53.3
Atru.chr7.2315 Acer truncatum HOM05D002286 ORTHO05D002468 2.9e-06 57.0 60 53.3
Cc08_g08220 Coffea canephora HOM05D002286 ORTHO05D002468 2.9e-06 57.0 60 50.0
Cc08_g08230 Coffea canephora HOM05D002286 ORTHO05D002468 2.9e-06 57.0 60 50.0
DCAR_002843 Daucus carota HOM05D002286 ORTHO05D002468 2.9e-06 57.0 60 53.3
Gohir.A06G048400 Gossypium hirsutum HOM05D002286 ORTHO05D002468 2.9e-06 57.0 60 51.7
TPR.G19045 Trifolium pratense HOM05D002286 ORTHO05D002468 2.9e-06 57.0 60 50.0
Aqoxy7G01804 Aquilegia oxysepala HOM05D002286 ORTHO05D002468 3.8e-06 56.6 60 50.0
DCAR_006259 Daucus carota HOM05D002286 ORTHO05D002468 3.8e-06 56.6 60 53.3
Lj8C608T4 Lonicera japonica HOM05D002286 ORTHO05D002468 3.8e-06 56.6 60 51.7
Psat0s2694g0160 Pisum sativum HOM05D002286 ORTHO05D002468 3.8e-06 56.6 60 48.3
Psat6g031280 Pisum sativum HOM05D002286 ORTHO05D002468 3.8e-06 56.6 60 48.3
Psat7g150560 Pisum sativum HOM05D002286 ORTHO05D002468 3.8e-06 56.6 60 48.3
AagrBONN_evm.TU.Sc2ySwM_340.487 Anthoceros agrestis HOM05D002286 ORTHO05D002468 5.0e-06 56.2 60 46.7
Dinv30221 Davidia involucrata HOM05D002286 ORTHO05D002468 5.0e-06 56.2 60 53.3
HanXRQChr16g0500611 Helianthus annuus HOM05D002286 ORTHO05D002468 5.0e-06 56.2 60 51.7
HanXRQChr03g0093961 Helianthus annuus HOM05D002286 ORTHO05D002468 6.5e-06 55.8 60 56.7
Mapoly0132s0021 Marchantia polymorpha HOM05D002286 ORTHO05D002468 8.5e-06 55.5 61 50.8


User provided reference genes

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