Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08298 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 5.6e-231 803.9 404 100.0
SEGI_03881 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 1.4e-141 506.9 278 92.4
QL11p032729 Quercus lobata HOM05D003511 ORTHO05D004403 1.4e-80 304.3 277 56.0
Dinv42203 Davidia involucrata HOM05D003511 ORTHO05D004403 5.3e-80 302.4 277 55.6
TAR381G0463 Trochodendron aralioides HOM05D003511 ORTHO05D004403 6.9e-80 302.0 277 56.0
MD10G1099400 Malus domestica HOM05D003511 ORTHO05D004403 9.1e-80 301.6 277 56.0
Dinv15773 Davidia involucrata HOM05D003511 ORTHO05D004403 1.5e-79 300.8 278 56.5
Nn5g30453 Nelumbo nucifera HOM05D003511 ORTHO05D004403 4.5e-79 299.3 297 51.2
Haze_10199 Corylus avellana HOM05D003511 ORTHO05D004403 1.0e-78 298.1 281 56.6
Actinidia34394 Actinidia chinensis HOM05D003511 ORTHO05D004403 5.5e-77 292.4 278 54.3
Lj5C215T12 Lonicera japonica HOM05D003511 ORTHO05D004403 3.6e-76 289.7 277 53.4
MBI16_g16349_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 6.1e-76 288.9 295 51.5
MBI16_g33969_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 6.1e-76 288.9 295 51.2
ATR0205G005 Amborella trichopoda HOM05D003511 ORTHO05D004403 8.0e-76 288.5 289 49.5
Rhsim10G0162400 Rhododendron simsii HOM05D003511 ORTHO05D004403 8.0e-76 288.5 280 52.5
Cfa004603 Carpinus fangiana HOM05D003511 ORTHO05D004403 2.3e-75 287.0 284 56.0
CSS0033371 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 3.0e-75 286.6 288 53.5
CSS0038772 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 3.0e-75 286.6 288 53.5
Cfa004604 Carpinus fangiana HOM05D003511 ORTHO05D004403 3.0e-75 286.6 282 52.5
Manes.10G075800 Manihot esculenta HOM05D003511 ORTHO05D004403 3.0e-75 286.6 278 53.2
CiPaw.05G013100 Carya illinoinensis HOM05D003511 ORTHO05D004403 5.2e-75 285.8 278 54.7
Eucgr.I01092 Eucalyptus grandis HOM05D003511 ORTHO05D004403 6.7e-75 285.4 283 53.0
Sabra09G0072200 Salix brachista HOM05D003511 ORTHO05D004403 6.7e-75 285.4 283 54.1
ATR0661G369 Amborella trichopoda HOM05D003511 ORTHO05D004403 8.8e-75 285.0 287 50.9
CiPaw.05G013200 Carya illinoinensis HOM05D003511 ORTHO05D004403 8.8e-75 285.0 278 52.2
Gohir.D12G021900 Gossypium hirsutum HOM05D003511 ORTHO05D004403 8.8e-75 285.0 287 53.3
Thecc.02G110900 Theobroma cacao HOM05D003511 ORTHO05D004403 1.5e-74 284.3 283 53.7
Gohir.A12G021400 Gossypium hirsutum HOM05D003511 ORTHO05D004403 2.0e-74 283.9 283 53.7
Medtr1g107135 Medicago truncatula HOM05D003511 ORTHO05D004403 2.0e-74 283.9 283 51.9
Hma1.2p1_1518F.1_g288460 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 5.7e-74 282.3 283 50.2
Gorai.008G022200 Gossypium raimondii HOM05D003511 ORTHO05D004403 7.4e-74 282.0 287 52.6
Potri.009G093900 Populus trichocarpa HOM05D003511 ORTHO05D004403 7.4e-74 282.0 277 54.5
TWI79G1106 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 7.4e-74 282.0 283 51.6
vmacro02524 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 1.3e-73 281.2 280 51.1
Ciclev10027838m.g Citrus clementina HOM05D003511 ORTHO05D004403 2.2e-73 280.4 280 51.4
Duzib052G0193 Durio zibethinus HOM05D003511 ORTHO05D004403 2.2e-73 280.4 288 53.1
Ciclev10027816m.g Citrus clementina HOM05D003511 ORTHO05D004403 3.7e-73 279.6 281 51.6
Atru.chr5.2456 Acer truncatum HOM05D003511 ORTHO05D004403 6.3e-73 278.9 278 52.5
Duzib132G0449 Durio zibethinus HOM05D003511 ORTHO05D004403 8.2e-73 278.5 287 52.3
QL11p032687 Quercus lobata HOM05D003511 ORTHO05D004403 8.2e-73 278.5 278 51.1
Cpa.g.sc106.113 Carica papaya HOM05D003511 ORTHO05D004403 1.1e-72 278.1 281 52.3
Hma1.2p1_1518F.1_g288470 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 1.4e-72 277.7 282 51.1
PGR142G0041 Punica granatum HOM05D003511 ORTHO05D004403 1.8e-72 277.3 284 50.7
RcHm_v2.0_Chr6g0254541 Rosa chinensis HOM05D003511 ORTHO05D004403 1.8e-72 277.3 310 49.0
Glyma.20G130432 Glycine max HOM05D003511 ORTHO05D004403 2.4e-72 276.9 282 51.1
Sabra16G0187700 Salix brachista HOM05D003511 ORTHO05D004403 5.3e-72 275.8 286 52.8
TPR.G19062 Trifolium pratense HOM05D003511 ORTHO05D004403 5.3e-72 275.8 280 50.4
Atru.chr5.2453 Acer truncatum HOM05D003511 ORTHO05D004403 9.1e-72 275.0 278 49.3
FAN24G0829 Fragaria x ananassa HOM05D003511 ORTHO05D004403 9.1e-72 275.0 277 52.3
MD10G1099200 Malus domestica HOM05D003511 ORTHO05D004403 1.2e-71 274.6 277 52.0
Aqoxy6G02835 Aquilegia oxysepala HOM05D003511 ORTHO05D004403 1.6e-71 274.2 280 51.4
FAN27G0709 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.0e-71 273.9 277 52.3
Eucgr.I01091 Eucalyptus grandis HOM05D003511 ORTHO05D004403 2.6e-71 273.5 278 50.7
COL.COLO4_32573 Corchorus olitorius HOM05D003511 ORTHO05D004403 3.5e-71 273.1 277 52.3
COL.COLO4_32574 Corchorus olitorius HOM05D003511 ORTHO05D004403 3.5e-71 273.1 277 53.1
FvH4_2g04810 Fragaria vesca HOM05D003511 ORTHO05D004403 3.5e-71 273.1 277 52.0
FAN15G2851 Fragaria x ananassa HOM05D003511 ORTHO05D004403 3.5e-71 273.1 277 52.0
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 5.9e-71 272.3 278 51.4
Lj5C215G13 Lonicera japonica HOM05D003511 ORTHO05D004403 5.9e-71 272.3 277 50.5
Prupe.8G137300 Prunus persica HOM05D003511 ORTHO05D004403 7.7e-71 271.9 278 51.4
Psat6g217200 Pisum sativum HOM05D003511 ORTHO05D004403 1.0e-70 271.6 337 44.5
Potri.001G299000 Populus trichocarpa HOM05D003511 ORTHO05D004403 1.0e-70 271.6 282 52.1
Hund00157 Selenicereus undatus HOM05D003511 ORTHO05D004403 1.0e-70 271.6 278 48.9
Glyma.20G130366 Glycine max HOM05D003511 ORTHO05D004403 1.3e-70 271.2 281 50.9
Lj5g0008514 Lotus japonicus HOM05D003511 ORTHO05D004403 1.3e-70 271.2 277 51.6
Cc02_g19400 Coffea canephora HOM05D003511 ORTHO05D004403 1.7e-70 270.8 279 52.0
DCAR_001655 Daucus carota HOM05D003511 ORTHO05D004403 1.7e-70 270.8 277 51.6
Nitab4.5_0001480g0130 Nicotiana tabacum HOM05D003511 ORTHO05D004403 2.2e-70 270.4 277 49.1
Thecc.02G111000 Theobroma cacao HOM05D003511 ORTHO05D004403 2.2e-70 270.4 277 50.2
DCAR_029092 Daucus carota HOM05D003511 ORTHO05D004403 6.5e-70 268.9 279 52.0
Glyma.10G260900 Glycine max HOM05D003511 ORTHO05D004403 6.5e-70 268.9 281 50.5
Nitab4.5_0003699g0020 Nicotiana tabacum HOM05D003511 ORTHO05D004403 6.5e-70 268.9 277 49.5
CANSAT25G1711 Cannabis sativa HOM05D003511 ORTHO05D004403 1.5e-69 267.7 277 49.8
vmacro01992 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 3.2e-69 266.5 278 51.1
FvH4_2g04870 Fragaria vesca HOM05D003511 ORTHO05D004403 4.2e-69 266.2 278 51.8
Duzib248G0534 Durio zibethinus HOM05D003511 ORTHO05D004403 5.5e-69 265.8 277 50.2
Sc08g0001330 Simmondsia chinensis HOM05D003511 ORTHO05D004403 5.5e-69 265.8 287 49.5
Eucgr.I01093 Eucalyptus grandis HOM05D003511 ORTHO05D004403 7.2e-69 265.4 288 48.3
Peaxi162Scf00016g02427 Petunia axillaris HOM05D003511 ORTHO05D004403 7.2e-69 265.4 273 49.5
Ca_11061_v3 Cicer arietinum L. HOM05D003511 ORTHO05D004403 9.4e-69 265.0 280 48.6
Gohir.D12G021700 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.2e-68 264.6 277 50.2
TWI75G1477 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 1.2e-68 264.6 277 50.2
Gorai.008G022000 Gossypium raimondii HOM05D003511 ORTHO05D004403 1.6e-68 264.2 278 49.6
PSO541G1166 Papaver somniferum HOM05D003511 ORTHO05D004403 2.7e-68 263.5 283 49.5
FAN20G1862 Fragaria x ananassa HOM05D003511 ORTHO05D004403 4.7e-68 262.7 273 51.3
FAN24G2294 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.0e-67 261.5 278 51.1
Phvul.002G053000 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 1.0e-67 261.5 285 50.5
Potri.009G093500 Populus trichocarpa HOM05D003511 ORTHO05D004403 1.0e-67 261.5 277 50.2
Lalb_Chr06g0165351 Lupinus albus HOM05D003511 ORTHO05D004403 3.0e-67 260.0 319 45.5
Rhsim10G0162100 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.5e-66 257.7 239 52.7
Rhsim11G0156500 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.5e-66 257.7 281 48.4
Rhsim11G0158000 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.5e-66 257.7 281 48.4
Sabra09G0072100 Salix brachista HOM05D003511 ORTHO05D004403 1.5e-66 257.7 277 49.8
TPR.G19061 Trifolium pratense HOM05D003511 ORTHO05D004403 1.5e-66 257.7 278 48.6
VMungo1215G0806 Vigna mungo HOM05D003511 ORTHO05D004403 1.5e-66 257.7 281 49.5
Lsat_1_v5_gn_9_111920 Lactuca sativa HOM05D003511 ORTHO05D004403 2.0e-66 257.3 280 49.6
CDE06G2550 Ceratophyllum demersum HOM05D003511 ORTHO05D004403 2.6e-66 256.9 302 48.0
Phvul.007G041400 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 4.4e-66 256.1 277 48.7
arahy.Tifrunner.gnm1.ann1.VN0KJM Arachis hypogaea HOM05D003511 ORTHO05D004403 7.5e-66 255.4 284 48.2
ECA240G1815 Erigeron canadensis HOM05D003511 ORTHO05D004403 7.5e-66 255.4 279 48.7
Manes.07G068400 Manihot esculenta HOM05D003511 ORTHO05D004403 7.5e-66 255.4 282 49.3
VMungo0720G0159 Vigna mungo HOM05D003511 ORTHO05D004403 9.7e-66 255.0 277 49.5
HanXRQChr09g0251071 Helianthus annuus HOM05D003511 ORTHO05D004403 1.3e-65 254.6 279 47.3
Sed0023024 Sechium edule HOM05D003511 ORTHO05D004403 1.3e-65 254.6 278 47.5
Manes.10G075700 Manihot esculenta HOM05D003511 ORTHO05D004403 2.2e-65 253.8 277 47.3
AUR62010328 Chenopodium quinoa HOM05D003511 ORTHO05D004403 4.8e-65 252.7 278 48.2
FAN15G0970 Fragaria x ananassa HOM05D003511 ORTHO05D004403 6.3e-65 252.3 307 47.2
Gohir.A12G021350 Gossypium hirsutum HOM05D003511 ORTHO05D004403 6.3e-65 252.3 268 49.6
DCAR_001656 Daucus carota HOM05D003511 ORTHO05D004403 1.4e-64 251.1 278 51.1
arahy.Tifrunner.gnm1.ann1.LFSR1E Arachis hypogaea HOM05D003511 ORTHO05D004403 2.4e-64 250.4 277 48.0
AUR62039058 Chenopodium quinoa HOM05D003511 ORTHO05D004403 5.3e-64 249.2 278 47.8
ClCG05G010350 Citrullus lanatus HOM05D003511 ORTHO05D004403 5.3e-64 249.2 278 46.8
PGR142G1515 Punica granatum HOM05D003511 ORTHO05D004403 5.3e-64 249.2 278 47.5
EL10Ac9g22257 Beta vulgaris HOM05D003511 ORTHO05D004403 1.6e-63 247.7 278 48.2
Migut.B00398 Erythranthe guttata HOM05D003511 ORTHO05D004403 1.6e-63 247.7 290 44.8
MELO3C019553.2 Cucumis melo HOM05D003511 ORTHO05D004403 3.5e-63 246.5 278 47.1
Ah.01g010970 Amaranthus hybridus HOM05D003511 ORTHO05D004403 2.2e-62 243.8 335 42.1
SMO116G0225 Selaginella moellendorffii HOM05D003511 ORTHO05D004403 2.9e-62 243.4 283 46.3
Sed0017826 Sechium edule HOM05D003511 ORTHO05D004403 3.8e-62 243.0 280 47.9
HPP92_006064 Vanilla planifolia HOM05D003511 ORTHO05D004403 5.0e-62 242.7 294 47.6
Thhalv10024398m.g Eutrema salsugineum HOM05D003511 ORTHO05D004403 6.5e-62 242.3 286 47.6
Medtr4g127370 Medicago truncatula HOM05D003511 ORTHO05D004403 8.5e-62 241.9 279 47.0
CsaV3_3G018140 Cucumis sativus L. HOM05D003511 ORTHO05D004403 1.9e-61 240.7 278 46.4
Glyma.01G243600 Glycine max HOM05D003511 ORTHO05D004403 2.5e-61 240.4 281 48.0
Os10g0339290 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 7.2e-61 238.8 278 47.1
Potri.001G298900 Populus trichocarpa HOM05D003511 ORTHO05D004403 1.6e-60 237.7 279 46.2
MSTRG.20193 Avicennia marina HOM05D003511 ORTHO05D004403 2.7e-60 236.9 292 44.2
THA.LOC104819550 Tarenaya hassleriana HOM05D003511 ORTHO05D004403 5.2e-59 232.6 286 45.1
Hund06308 Selenicereus undatus HOM05D003511 ORTHO05D004403 5.7e-58 229.2 277 44.4
AL7G17030 Arabidopsis lyrata HOM05D003511 ORTHO05D004403 7.5e-58 228.8 286 44.8
Sp7g32040 Schrenkiella parvula HOM05D003511 ORTHO05D004403 9.8e-58 228.4 286 45.8
Os10g0339600 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 2.2e-57 227.3 303 45.5
Lsat_1_v5_gn_5_116340 Lactuca sativa HOM05D003511 ORTHO05D004403 6.3e-57 225.7 280 43.6
CARHR242530 Cardamine hirsuta HOM05D003511 ORTHO05D004403 8.3e-57 225.3 286 44.1
ECA234G0109 Erigeron canadensis HOM05D003511 ORTHO05D004403 1.1e-56 224.9 276 43.8
BcaNung04164 Brassica carinata HOM05D003511 ORTHO05D004403 1.8e-56 224.2 286 45.5
Carub.0007s0611 Capsella rubella HOM05D003511 ORTHO05D004403 1.8e-56 224.2 286 44.1
Lsat_1_v5_gn_5_116360 Lactuca sativa HOM05D003511 ORTHO05D004403 3.1e-56 223.4 276 43.8
Aa31LG2G16810 Aethionema arabicum HOM05D003511 ORTHO05D004403 4.1e-56 223.0 286 44.1
AUR62039057 Chenopodium quinoa HOM05D003511 ORTHO05D004403 7.0e-56 222.2 276 44.9
HanXRQChr10g0296941 Helianthus annuus HOM05D003511 ORTHO05D004403 1.2e-55 221.5 276 44.2
AT4G34260 Arabidopsis thaliana HOM05D003511 ORTHO05D004403 2.9e-54 216.9 286 44.8
BraA01t00406Z Brassica rapa HOM05D003511 ORTHO05D004403 2.9e-54 216.9 285 43.2
Pp3c19_10350 Physcomitrium patens HOM05D003511 ORTHO05D004403 6.6e-54 215.7 311 40.2
A01p04170 Brassica napus HOM05D003511 ORTHO05D004403 8.6e-54 215.3 285 43.2
BcaNung04986 Brassica carinata HOM05D003511 ORTHO05D004403 2.5e-53 213.8 285 42.8
C01p04540 Brassica napus HOM05D003511 ORTHO05D004403 1.2e-52 211.5 285 42.8
BolC1t00439H Brassica oleracea HOM05D003511 ORTHO05D004403 1.2e-52 211.5 285 42.8
Oeu029532.2 Olea europaea HOM05D003511 ORTHO05D004403 4.7e-52 209.5 293 43.7
Zm00001eb027590 Zea mays HOM05D003511 ORTHO05D004403 4.0e-51 206.5 311 41.8
Mapoly0115s0027 Marchantia polymorpha HOM05D003511 ORTHO05D004403 6.8e-51 205.7 305 38.0
RcHm_v2.0_Chr6g0254581 Rosa chinensis HOM05D003511 ORTHO05D004403 3.7e-49 199.9 227 46.3
AUR62010329 Chenopodium quinoa HOM05D003511 ORTHO05D004403 9.8e-42 175.3 298 37.9
GSVIVG01037900001 Vitis vinifera HOM05D003511 ORTHO05D004403 9.2e-40 168.7 288 37.8
Lj5A215G58 Lonicera japonica HOM05D003511 ORTHO05D004403 2.8e-36 157.1 277 35.7
Oeu013759.1 Olea europaea HOM05D003511 ORTHO05D004403 7.8e-31 139.0 283 35.0
SEGI_35755 Sequoiadendron giganteum HOM05D000290 ORTHO05D009072 9.5e-29 132.1 70 90.0
SEGI_24819 Sequoiadendron giganteum HOM05D066805 ORTHO05D005814 3.1e-27 127.1 63 93.7
CSS0009203 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.3e-25 121.7 100 58.0
CSS0016029 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.3e-25 121.7 100 58.0
SEGI_37563 Sequoiadendron giganteum HOM05D003511 ORTHO05D385140 2.2e-25 120.9 171 45.6
SEGI_08738 Sequoiadendron giganteum HOM05D000877 ORTHO05D005814 1.4e-19 101.7 56 85.7
SEGI_10475 Sequoiadendron giganteum HOM05D003439 ORTHO05D004062 2.4e-19 100.9 174 39.7
SEGI_07482 Sequoiadendron giganteum HOM05D000707 ORTHO05D004608 2.9e-17 94.0 80 58.8
SEGI_04973 Sequoiadendron giganteum HOM05D004823 ORTHO05D005814 2.7e-15 87.4 96 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4246 Anthoceros agrestis HOM05D003511 ORTHO05D004403 2.3e-14 84.3 87 50.6
Lsat_1_v5_gn_2_5441 Lactuca sativa HOM05D003511 ORTHO05D229135 3.9e-14 83.6 180 35.0
SEGI_06725 Sequoiadendron giganteum HOM05D000702 ORTHO05D001396 1.5e-13 81.6 41 92.7
Oeu042151.1 Olea europaea HOM05D003511 ORTHO05D004403 4.0e-11 73.6 98 46.9
SEGI_36333 Sequoiadendron giganteum HOM05D000234 ORTHO05D000335 6.9e-11 72.8 36 88.9
DCAR_001658 Daucus carota HOM05D003511 ORTHO05D175251 2.3e-06 57.8 47 55.3


User provided reference genes

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