Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08197 Sequoiadendron giganteum HOM05D004630 ORTHO05D005727 7.3e-74 280.4 136 100.0
SEGI_34684 Sequoiadendron giganteum HOM05D004630 ORTHO05D005727 2.3e-35 152.5 73 100.0
MBI05_g35190_MAGBIO Magnolia biondii HOM05D004630 ORTHO05D005727 3.0e-35 152.1 105 70.5
CANSAT11G0088 Cannabis sativa HOM05D004630 ORTHO05D005727 2.5e-34 149.1 105 69.5
Sabra03G0033900 Salix brachista HOM05D004630 ORTHO05D005727 3.7e-33 145.2 105 66.7
TAR636G2703 Trochodendron aralioides HOM05D004630 ORTHO05D005727 4.8e-33 144.8 105 66.7
Potri.003G059300 Populus trichocarpa HOM05D004630 ORTHO05D005727 1.4e-32 143.3 105 66.7
CARHR195960 Cardamine hirsuta HOM05D004630 ORTHO05D005727 1.8e-32 142.9 105 65.7
Ca_21358_v3 Cicer arietinum L. HOM05D004630 ORTHO05D005727 2.4e-32 142.5 105 61.9
Dinv43828 Davidia involucrata HOM05D004630 ORTHO05D005727 6.9e-32 141.0 104 65.4
Medtr4g123557 Medicago truncatula HOM05D004630 ORTHO05D005727 9.0e-32 140.6 106 60.4
arahy.Tifrunner.gnm1.ann1.N7874Q Arachis hypogaea HOM05D004630 ORTHO05D005727 1.5e-31 139.8 106 61.3
arahy.Tifrunner.gnm1.ann1.W5Q7UV Arachis hypogaea HOM05D004630 ORTHO05D005727 1.5e-31 139.8 106 61.3
BcaB08g36795 Brassica carinata HOM05D004630 ORTHO05D005727 1.5e-31 139.8 105 64.8
Nn7g38087 Nelumbo nucifera HOM05D004630 ORTHO05D005727 1.5e-31 139.8 105 64.8
PSO210G5682 Papaver somniferum HOM05D004630 ORTHO05D005727 2.0e-31 139.4 105 64.8
RcHm_v2.0_Chr4g0428061 Rosa chinensis HOM05D004630 ORTHO05D005727 2.0e-31 139.4 105 65.7
AL6G28300 Arabidopsis lyrata HOM05D004630 ORTHO05D005727 2.6e-31 139.0 105 63.8
CSS0009392 Camellia sinensis var. sinensis HOM05D004630 ORTHO05D005727 3.4e-31 138.7 105 62.9
CSS0039221 Camellia sinensis var. sinensis HOM05D004630 ORTHO05D005727 3.4e-31 138.7 105 62.9
Sc13g0008160 Simmondsia chinensis HOM05D004630 ORTHO05D005727 3.4e-31 138.7 105 63.8
THA.LOC104820866 Tarenaya hassleriana HOM05D004630 ORTHO05D005727 3.4e-31 138.7 105 61.9
Aqoxy7G01739 Aquilegia oxysepala HOM05D004630 ORTHO05D005727 4.5e-31 138.3 105 66.7
BraA10t44274Z Brassica rapa HOM05D004630 ORTHO05D005727 4.5e-31 138.3 105 62.9
Carub.0006s1544 Capsella rubella HOM05D004630 ORTHO05D005727 4.5e-31 138.3 105 64.8
FvH4_4g21830 Fragaria vesca HOM05D004630 ORTHO05D005727 4.5e-31 138.3 105 63.8
HanXRQChr17g0554761 Helianthus annuus HOM05D004630 ORTHO05D005727 5.8e-31 137.9 105 61.0
MD13G1136600 Malus domestica HOM05D004630 ORTHO05D005727 5.8e-31 137.9 105 63.8
Sp6g26980 Schrenkiella parvula HOM05D004630 ORTHO05D005727 5.8e-31 137.9 105 63.8
A10p22150 Brassica napus HOM05D004630 ORTHO05D005727 7.6e-31 137.5 105 61.9
CAN.G689.26 Capsicum annuum HOM05D004630 ORTHO05D005727 1.0e-30 137.1 128 53.1
MD16G1131900 Malus domestica HOM05D004630 ORTHO05D005727 1.0e-30 137.1 105 63.8
Nitab4.5_0004432g0030 Nicotiana tabacum HOM05D004630 ORTHO05D005727 1.0e-30 137.1 105 60.0
Psat4g020520 Pisum sativum HOM05D004630 ORTHO05D005727 1.0e-30 137.1 105 59.0
ATR0019G053 Amborella trichopoda HOM05D004630 ORTHO05D005727 1.3e-30 136.7 107 63.6
BcaC04g18817 Brassica carinata HOM05D004630 ORTHO05D005727 1.3e-30 136.7 105 62.9
C09p59940 Brassica napus HOM05D004630 ORTHO05D005727 1.3e-30 136.7 105 62.9
BolC9t58830H Brassica oleracea HOM05D004630 ORTHO05D005727 1.3e-30 136.7 105 62.9
Migut.N03011 Erythranthe guttata HOM05D004630 ORTHO05D005727 1.3e-30 136.7 107 61.7
Manes.11G127500 Manihot esculenta HOM05D004630 ORTHO05D005727 1.3e-30 136.7 105 64.8
Prupe.1G208800 Prunus persica HOM05D004630 ORTHO05D005727 1.3e-30 136.7 105 63.8
TPR.G34395 Trifolium pratense HOM05D004630 ORTHO05D005727 1.7e-30 136.3 105 59.0
COL.COLO4_38353 Corchorus olitorius HOM05D004630 ORTHO05D005727 2.2e-30 136.0 128 55.5
Glyma.13G116800 Glycine max HOM05D004630 ORTHO05D005727 2.2e-30 136.0 105 59.0
Lj9C588T4 Lonicera japonica HOM05D004630 ORTHO05D005727 2.2e-30 136.0 105 62.9
Lalb_Chr12g0200461 Lupinus albus HOM05D004630 ORTHO05D005727 2.2e-30 136.0 105 59.0
Actinidia21906 Actinidia chinensis HOM05D004630 ORTHO05D005727 2.9e-30 135.6 105 61.9
AT5G17250 Arabidopsis thaliana HOM05D004630 ORTHO05D005727 3.8e-30 135.2 105 61.9
Solyc07g014610.4 Solanum lycopersicum HOM05D004630 ORTHO05D005727 3.8e-30 135.2 105 60.0
Sopen07g005480 Solanum pennellii HOM05D004630 ORTHO05D005727 3.8e-30 135.2 105 60.0
GSVIVG01034228001 Vitis vinifera HOM05D004630 ORTHO05D005727 3.8e-30 135.2 105 61.0
CDE08G0728 Ceratophyllum demersum HOM05D004630 ORTHO05D005727 8.4e-30 134.0 107 59.8
AUR62010786 Chenopodium quinoa HOM05D004630 ORTHO05D005727 8.4e-30 134.0 105 61.9
AUR62019782 Chenopodium quinoa HOM05D004630 ORTHO05D005727 8.4e-30 134.0 105 61.9
MELO3C002801.2 Cucumis melo HOM05D004630 ORTHO05D005727 8.4e-30 134.0 105 61.0
CsaV3_1G037410 Cucumis sativus L. HOM05D004630 ORTHO05D005727 8.4e-30 134.0 105 61.9
PGSC0003DMG400020700 Solanum tuberosum HOM05D004630 ORTHO05D005727 8.4e-30 134.0 105 60.0
Rhsim10G0128800 Rhododendron simsii HOM05D004630 ORTHO05D005727 1.1e-29 133.7 105 60.0
Aa31LG11G12420 Aethionema arabicum HOM05D004630 ORTHO05D005727 1.4e-29 133.3 105 60.0
Pp3c19_7340 Physcomitrium patens HOM05D004630 ORTHO05D005727 1.4e-29 133.3 130 51.5
Ciclev10018715m.g Citrus clementina HOM05D004630 ORTHO05D005727 1.9e-29 132.9 107 58.9
Peaxi162Scf00341g00622 Petunia axillaris HOM05D004630 ORTHO05D005727 1.9e-29 132.9 106 61.3
Duzib187G1410 Durio zibethinus HOM05D004630 ORTHO05D005727 2.5e-29 132.5 105 62.9
Thhalv10012592m.g Eutrema salsugineum HOM05D004630 ORTHO05D005727 2.5e-29 132.5 105 61.0
Sed0000779 Sechium edule HOM05D004630 ORTHO05D005727 2.5e-29 132.5 105 62.9
Lj2g0001674 Lotus japonicus HOM05D004630 ORTHO05D005727 3.2e-29 132.1 105 57.1
QL02p088183 Quercus lobata HOM05D004630 ORTHO05D005727 3.2e-29 132.1 105 61.9
HPP92_010565 Vanilla planifolia HOM05D004630 ORTHO05D005727 3.2e-29 132.1 128 54.7
VMungo1215G1222 Vigna mungo HOM05D004630 ORTHO05D005727 3.2e-29 132.1 105 56.2
Phvul.003G124900 Phaseolus vulgaris HOM05D004630 ORTHO05D005727 5.5e-29 131.3 105 57.1
MSTRG.13783 Avicennia marina HOM05D004630 ORTHO05D005727 7.1e-29 131.0 107 57.0
EL10Ac5g12859 Beta vulgaris HOM05D004630 ORTHO05D005727 7.1e-29 131.0 105 61.9
Cfa003362 Carpinus fangiana HOM05D004630 ORTHO05D005727 7.1e-29 131.0 105 61.9
ClCG03G006320 Citrullus lanatus HOM05D004630 ORTHO05D005727 7.1e-29 131.0 105 59.0
Eucgr.B01002 Eucalyptus grandis HOM05D004630 ORTHO05D005727 7.1e-29 131.0 105 62.9
Gohir.A01G096700 Gossypium hirsutum HOM05D004630 ORTHO05D005727 7.1e-29 131.0 105 63.8
Gohir.D01G081000 Gossypium hirsutum HOM05D004630 ORTHO05D005727 7.1e-29 131.0 105 63.8
Lsat_1_v5_gn_8_137620 Lactuca sativa HOM05D004630 ORTHO05D005727 7.1e-29 131.0 105 60.0
Zm00001eb127550 Zea mays HOM05D004630 ORTHO05D005727 7.1e-29 131.0 107 57.9
SalBow6G4274 Salvia bowleyana HOM05D004630 ORTHO05D005727 1.2e-28 130.2 107 59.8
vmacro00088 Vaccinium macrocarpon HOM05D004630 ORTHO05D005727 1.2e-28 130.2 123 54.5
Atru.chr1.2080 Acer truncatum HOM05D004630 ORTHO05D005727 1.6e-28 129.8 105 61.0
ECA233G6037 Erigeron canadensis HOM05D004630 ORTHO05D005727 2.1e-28 129.4 105 58.1
Lj4g0015635 Lotus japonicus HOM05D004630 ORTHO05D005727 3.5e-28 128.6 105 56.2
Rhsim05G0234800 Rhododendron simsii HOM05D004630 ORTHO05D005727 3.5e-28 128.6 110 59.1
Hma1.2p1_0482F.1_g162689 Hydrangea macrophylla HOM05D004630 ORTHO05D005727 6.0e-28 127.9 105 59.0
CiPaw.04G170700 Carya illinoinensis HOM05D004630 ORTHO05D005727 7.9e-28 127.5 105 61.0
DCAR_009035 Daucus carota HOM05D004630 ORTHO05D005727 7.9e-28 127.5 105 61.9
Hund12270 Selenicereus undatus HOM05D004630 ORTHO05D005727 1.3e-27 126.7 105 58.1
Mapoly0027s0070 Marchantia polymorpha HOM05D004630 ORTHO05D005727 2.3e-27 125.9 129 51.2
Thecc.07G164200 Theobroma cacao HOM05D004630 ORTHO05D005727 3.0e-27 125.6 105 60.0
Haze_25597 Corylus avellana HOM05D004630 ORTHO05D005727 8.7e-27 124.0 111 58.6
Oeu028192.1 Olea europaea HOM05D004630 ORTHO05D005727 8.7e-27 124.0 119 54.6
Os10g0170300 Oryza sativa ssp. japonica HOM05D004630 ORTHO05D005727 1.1e-26 123.6 107 56.1
SalBow2G2706 Salvia bowleyana HOM05D004630 ORTHO05D005727 1.1e-26 123.6 107 56.1
SalBow5G1401 Salvia bowleyana HOM05D004630 ORTHO05D005727 1.1e-26 123.6 107 56.1
SalBow7G2764 Salvia bowleyana HOM05D004630 ORTHO05D005727 1.1e-26 123.6 107 56.1
PGR031G0128 Punica granatum HOM05D004630 ORTHO05D005727 3.3e-26 122.1 105 58.1
SHI11357 Sapria himalayana HOM05D004630 ORTHO05D005727 4.3e-26 121.7 105 60.0
Cc03_g11340 Coffea canephora HOM05D004630 ORTHO05D005727 1.3e-25 120.2 99 57.6
Ah.12g052160 Amaranthus hybridus HOM05D004630 ORTHO05D005727 2.4e-24 115.9 105 56.2
AagrBONN_evm.TU.Sc2ySwM_344.4351 Anthoceros agrestis HOM05D004630 ORTHO05D005727 1.2e-23 113.6 128 47.7
Gorai.002G105900 Gossypium raimondii HOM05D004630 ORTHO05D005727 1.2e-23 113.6 178 39.9
unitig_578.g16518 Utricularia gibba HOM05D004630 ORTHO05D005727 1.2e-23 113.6 109 56.0
FAN07G0643 Fragaria x ananassa HOM05D004630 ORTHO05D005727 5.0e-22 108.2 88 62.5
CBR_g31522 Chara braunii HOM05D004630 ORTHO05D005727 3.2e-21 105.5 128 41.4
HPP92_010574 Vanilla planifolia HOM05D004630 ORTHO05D005727 3.6e-20 102.1 89 57.3
Nitab4.5_0000848g0060 Nicotiana tabacum HOM05D004630 ORTHO05D005727 4.6e-20 101.7 71 63.4
FAN12G2264 Fragaria x ananassa HOM05D004630 ORTHO05D005727 1.8e-19 99.8 70 67.1
Cpa.g.sc80.35 Carica papaya HOM05D004630 ORTHO05D005727 5.1e-19 98.2 70 67.1
SMO116G0486 Selaginella moellendorffii HOM05D004630 ORTHO05D005727 8.8e-19 97.4 105 48.6
Actinidia28194 Actinidia chinensis HOM05D004630 ORTHO05D005727 7.7e-15 84.3 72 56.9
Ciclev10023873m.g Citrus clementina HOM05D004630 ORTHO05D005727 1.2e-12 77.0 47 70.2
FAN12G0960 Fragaria x ananassa HOM05D004630 ORTHO05D005727 2.7e-12 75.9 54 64.8
Cre02.g094050 Chlamydomonas reinhardtii HOM05D004630 ORTHO05D005727 2.4e-08 62.8 178 27.5
MCO01G549 Micromonas commoda HOM05D004630 ORTHO05D005727 3.1e-08 62.4 97 34.0
Cfa023376 Carpinus fangiana HOM05D004630 ORTHO05D005727 4.5e-07 58.5 106 33.0
Gorai.003G043400 Gossypium raimondii HOM05D006593 ORTHO05D008512 4.5e-07 58.5 126 31.7
Haze_03860 Corylus avellana HOM05D006593 ORTHO05D008512 5.9e-07 58.2 125 32.0
Gohir.D03G042700 Gossypium hirsutum HOM05D006593 ORTHO05D008512 7.7e-07 57.8 126 31.7
Medtr5g032210 Medicago truncatula HOM05D006593 ORTHO05D008512 7.7e-07 57.8 125 32.8
Lalb_Chr05g0216291 Lupinus albus HOM05D006593 ORTHO05D008512 1.0e-06 57.4 115 32.2
Lj2g0020402 Lotus japonicus HOM05D006593 ORTHO05D008512 1.3e-06 57.0 125 30.4
Gohir.A02G131300 Gossypium hirsutum HOM05D006593 ORTHO05D008512 2.2e-06 56.2 125 29.6
COL.COLO4_27348 Corchorus olitorius HOM05D006593 ORTHO05D008512 3.8e-06 55.5 127 29.9
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 3.8e-06 55.5 123 27.6
TPR.G29973 Trifolium pratense HOM05D006593 ORTHO05D008512 3.8e-06 55.5 84 39.3
ATR0665G270 Amborella trichopoda HOM05D006593 ORTHO05D008512 5.0e-06 55.1 126 32.5
Psat2g085480 Pisum sativum HOM05D006593 ORTHO05D008512 5.0e-06 55.1 128 31.2
Thecc.01G091500 Theobroma cacao HOM05D006593 ORTHO05D008512 6.5e-06 54.7 125 28.8
Ca_04534_v3 Cicer arietinum L. HOM05D006593 ORTHO05D008512 8.5e-06 54.3 125 32.0
ECA246G1560 Erigeron canadensis HOM05D006593 ORTHO05D004993 8.5e-06 54.3 116 31.9
Os02g0781600 Oryza sativa ssp. japonica HOM05D006593 ORTHO05D008512 8.5e-06 54.3 126 29.4


User provided reference genes

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