Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08113 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 2.8e-140 501.9 246 100.0
HPP92_009154 Vanilla planifolia HOM05D004235 ORTHO05D005157 8.2e-92 340.9 224 72.3
ATR0789G124 Amborella trichopoda HOM05D004235 ORTHO05D005157 4.1e-91 338.6 224 72.8
Nitab4.5_0000540g0150 Nicotiana tabacum HOM05D004235 ORTHO05D005157 7.0e-91 337.8 224 71.9
Peaxi162Scf00498g00032 Petunia axillaris HOM05D004235 ORTHO05D005157 1.2e-90 337.0 224 71.9
Nn8g38947 Nelumbo nucifera HOM05D004235 ORTHO05D005157 1.6e-90 336.7 224 70.5
Nitab4.5_0003781g0020 Nicotiana tabacum HOM05D004235 ORTHO05D005157 2.6e-90 335.9 224 71.0
Dinv36730 Davidia involucrata HOM05D004235 ORTHO05D005157 5.9e-90 334.7 224 71.9
PSO063G2511 Papaver somniferum HOM05D004235 ORTHO05D005157 5.9e-90 334.7 224 71.9
CSS0042623 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.0e-89 334.0 224 72.8
CSS0043888 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.0e-89 334.0 224 72.8
PSO832G0536 Papaver somniferum HOM05D004235 ORTHO05D005157 1.0e-89 334.0 224 71.9
Aqoxy7G01320 Aquilegia oxysepala HOM05D004235 ORTHO05D005157 1.7e-89 333.2 224 71.0
PGSC0003DMG402000346 Solanum tuberosum HOM05D004235 ORTHO05D005157 2.2e-89 332.8 224 71.0
Sopen12g003640 Solanum pennellii HOM05D004235 ORTHO05D005157 3.8e-89 332.0 224 71.4
COL.COLO4_18249 Corchorus olitorius HOM05D004235 ORTHO05D005157 5.0e-89 331.6 224 71.0
Cc06_g10940 Coffea canephora HOM05D004235 ORTHO05D005157 8.5e-89 330.9 224 70.5
Duzib168G2142 Durio zibethinus HOM05D004235 ORTHO05D005157 1.9e-88 329.7 224 70.5
Solyc12g008710.2 Solanum lycopersicum HOM05D004235 ORTHO05D005157 1.9e-88 329.7 224 70.5
Os01g0558850 Oryza sativa ssp. japonica HOM05D004235 ORTHO05D005157 3.2e-88 328.9 224 71.4
Atru.chr7.1524 Acer truncatum HOM05D004235 ORTHO05D005157 5.5e-88 328.2 224 69.6
CAN.G1241.9 Capsicum annuum HOM05D004235 ORTHO05D005157 5.5e-88 328.2 224 69.6
Mapoly0007s0115 Marchantia polymorpha HOM05D004235 ORTHO05D005157 9.4e-88 327.4 226 69.5
QL02p063521 Quercus lobata HOM05D004235 ORTHO05D005157 9.4e-88 327.4 224 71.4
Rhsim03G0234900 Rhododendron simsii HOM05D004235 ORTHO05D005157 1.2e-87 327.0 224 71.0
Hma1.2p1_1074F.1_g254400 Hydrangea macrophylla HOM05D004235 ORTHO05D005157 2.7e-87 325.9 224 69.2
Cfa003136 Carpinus fangiana HOM05D004235 ORTHO05D005157 6.1e-87 324.7 224 70.5
Cpa.g.sc2319.2 Carica papaya HOM05D004235 ORTHO05D005157 8.0e-87 324.3 224 70.1
Haze_25867 Corylus avellana HOM05D004235 ORTHO05D005157 1.0e-86 323.9 224 70.5
Lj7C671G7 Lonicera japonica HOM05D004235 ORTHO05D005157 1.0e-86 323.9 224 70.5
MD15G1202300 Malus domestica HOM05D004235 ORTHO05D005157 1.0e-86 323.9 224 70.5
vmacro06271 Vaccinium macrocarpon HOM05D004235 ORTHO05D005157 1.0e-86 323.9 224 71.0
DCAR_028630 Daucus carota HOM05D004235 ORTHO05D005157 1.4e-86 323.6 224 72.8
SalBow6G3097 Salvia bowleyana HOM05D004235 ORTHO05D005157 1.4e-86 323.6 225 68.4
Gohir.D05G029800 Gossypium hirsutum HOM05D004235 ORTHO05D005157 1.8e-86 323.2 224 67.9
Gorai.009G030000 Gossypium raimondii HOM05D004235 ORTHO05D005157 1.8e-86 323.2 224 67.9
AL8G32560 Arabidopsis lyrata HOM05D004235 ORTHO05D005157 3.0e-86 322.4 224 70.5
AT5G56730 Arabidopsis thaliana HOM05D004235 ORTHO05D005157 3.0e-86 322.4 224 70.5
Ciclev10010146m.g Citrus clementina HOM05D004235 ORTHO05D005157 3.0e-86 322.4 224 67.9
Carub.0008s1721 Capsella rubella HOM05D004235 ORTHO05D005157 4.0e-86 322.0 224 70.1
Gohir.A05G028200 Gossypium hirsutum HOM05D004235 ORTHO05D005157 4.0e-86 322.0 224 67.4
Manes.16G105300 Manihot esculenta HOM05D004235 ORTHO05D005157 4.0e-86 322.0 224 70.1
Phvul.002G305500 Phaseolus vulgaris HOM05D004235 ORTHO05D005157 4.0e-86 322.0 226 69.9
Sp6g18480 Schrenkiella parvula HOM05D004235 ORTHO05D005157 4.0e-86 322.0 224 70.1
Thecc.09G094700 Theobroma cacao HOM05D004235 ORTHO05D005157 4.0e-86 322.0 224 68.3
THA.LOC104817747 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 5.2e-86 321.6 224 68.8
arahy.Tifrunner.gnm1.ann1.00M5T5 Arachis hypogaea HOM05D004235 ORTHO05D005157 6.7e-86 321.2 225 71.1
TPR.G25478 Trifolium pratense HOM05D004235 ORTHO05D005157 6.7e-86 321.2 224 69.6
Psat7g019200 Pisum sativum HOM05D004235 ORTHO05D005157 8.8e-86 320.9 224 70.1
Aa31LG3G12550 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.1e-85 320.5 224 70.1
BcaB08g36065 Brassica carinata HOM05D004235 ORTHO05D005157 1.1e-85 320.5 224 70.1
Glyma.05G223700 Glycine max HOM05D004235 ORTHO05D005157 1.1e-85 320.5 225 70.7
arahy.Tifrunner.gnm1.ann1.VZDV7L Arachis hypogaea HOM05D004235 ORTHO05D005157 1.5e-85 320.1 225 70.7
Prupe.7G214900 Prunus persica HOM05D004235 ORTHO05D005157 1.5e-85 320.1 224 70.5
CANSAT56G3324 Cannabis sativa HOM05D004235 ORTHO05D005157 2.0e-85 319.7 224 68.8
VMungo0251G2139 Vigna mungo HOM05D004235 ORTHO05D005157 2.0e-85 319.7 225 69.8
RcHm_v2.0_Chr2g0092561 Rosa chinensis HOM05D004235 ORTHO05D005157 2.6e-85 319.3 224 70.1
BcaC04g20058 Brassica carinata HOM05D004235 ORTHO05D005157 3.3e-85 318.9 224 69.6
A10p14070 Brassica napus HOM05D004235 ORTHO05D005157 3.3e-85 318.9 224 69.6
BolC9t57680H Brassica oleracea HOM05D004235 ORTHO05D005157 3.3e-85 318.9 224 69.6
BraA10t43498Z Brassica rapa HOM05D004235 ORTHO05D005157 4.4e-85 318.5 224 69.6
CiPaw.03G220000 Carya illinoinensis HOM05D004235 ORTHO05D005157 4.4e-85 318.5 224 70.1
Oeu052124.2 Olea europaea HOM05D004235 ORTHO05D005157 5.7e-85 318.2 225 69.8
C09p48300 Brassica napus HOM05D004235 ORTHO05D005157 7.5e-85 317.8 224 69.2
FAN26G0912 Fragaria x ananassa HOM05D004235 ORTHO05D005157 7.5e-85 317.8 224 69.2
FAN26G2547 Fragaria x ananassa HOM05D004235 ORTHO05D005157 7.5e-85 317.8 224 69.2
Lj4g0008017 Lotus japonicus HOM05D004235 ORTHO05D005157 9.7e-85 317.4 225 68.4
PGR102G2758 Punica granatum HOM05D004235 ORTHO05D005157 9.7e-85 317.4 224 68.8
CARHR270480 Cardamine hirsuta HOM05D004235 ORTHO05D005157 1.3e-84 317.0 224 69.6
TWI34G1426 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 1.3e-84 317.0 224 67.4
Ca_17388_v3 Cicer arietinum L. HOM05D004235 ORTHO05D005157 2.2e-84 316.2 224 68.8
FAN28G2658 Fragaria x ananassa HOM05D004235 ORTHO05D005157 2.2e-84 316.2 224 69.2
Glyma.08G030800 Glycine max HOM05D004235 ORTHO05D005157 2.2e-84 316.2 225 69.3
SGA_v2.0_scaffold62G21574 Striga asiatica HOM05D004235 ORTHO05D005157 2.2e-84 316.2 224 66.5
TAR383G0914 Trochodendron aralioides HOM05D004235 ORTHO05D005157 2.2e-84 316.2 224 69.6
Migut.J00436 Erythranthe guttata HOM05D004235 ORTHO05D005157 6.3e-84 314.7 224 67.4
FvH4_1g06790 Fragaria vesca HOM05D004235 ORTHO05D005157 6.3e-84 314.7 224 68.8
FAN19G3193 Fragaria x ananassa HOM05D004235 ORTHO05D005157 6.3e-84 314.7 224 68.8
CsaV3_2G001610 Cucumis sativus L. HOM05D004235 ORTHO05D005157 8.2e-84 314.3 224 69.2
FAN23G1406 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.1e-83 313.9 224 68.8
Sc04g0004610 Simmondsia chinensis HOM05D004235 ORTHO05D005157 3.1e-83 312.4 224 67.0
unitig_26.g9162 Utricularia gibba HOM05D004235 ORTHO05D005157 4.1e-83 312.0 224 66.1
Hund06688 Selenicereus undatus HOM05D004235 ORTHO05D005157 5.3e-83 311.6 224 67.4
THA.LOC104811734 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 2.0e-82 309.7 224 67.4
ClCG11G001880 Citrullus lanatus HOM05D004235 ORTHO05D005157 2.7e-82 309.3 224 68.3
GSVIVG01015250001 Vitis vinifera HOM05D004235 ORTHO05D005157 3.5e-82 308.9 224 67.4
MELO3C004614.2 Cucumis melo HOM05D004235 ORTHO05D005157 5.9e-82 308.1 226 67.7
Sed0001781 Sechium edule HOM05D004235 ORTHO05D005157 7.7e-82 307.8 224 68.8
ECA236G4919 Erigeron canadensis HOM05D004235 ORTHO05D005157 1.7e-81 306.6 223 66.4
Lalb_Chr09g0331751 Lupinus albus HOM05D004235 ORTHO05D005157 2.9e-81 305.8 225 68.0
HanXRQChr04g0112481 Helianthus annuus HOM05D004235 ORTHO05D005157 3.8e-81 305.4 224 67.4
EL10Ac8g19244 Beta vulgaris HOM05D004235 ORTHO05D005157 6.5e-81 304.7 224 63.4
Eucgr.C03689 Eucalyptus grandis HOM05D004235 ORTHO05D005157 1.5e-80 303.5 224 66.5
Lsat_1_v5_gn_8_88100 Lactuca sativa HOM05D004235 ORTHO05D005157 1.9e-80 303.1 223 66.4
Pp3c19_10200 Physcomitrium patens HOM05D004235 ORTHO05D005157 4.2e-80 302.0 226 65.9
SMO268G0025 Selaginella moellendorffii HOM05D004235 ORTHO05D005157 9.4e-80 300.8 226 65.5
AUR62027475 Chenopodium quinoa HOM05D004235 ORTHO05D005157 1.8e-78 296.6 224 62.9
TWI63G1589 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 2.3e-78 296.2 223 64.1
AUR62034005 Chenopodium quinoa HOM05D004235 ORTHO05D005157 3.0e-78 295.8 224 62.5
Thecc.09G094600 Theobroma cacao HOM05D004235 ORTHO05D005157 6.8e-78 294.7 224 62.5
Thecc.09G094500 Theobroma cacao HOM05D004235 ORTHO05D005157 2.2e-76 289.7 224 62.9
Gorai.004G283400 Gossypium raimondii HOM05D004235 ORTHO05D005157 2.8e-76 289.3 224 62.9
Gohir.D08G265400 Gossypium hirsutum HOM05D004235 ORTHO05D005157 3.7e-76 288.9 224 62.9
Gohir.A08G244500 Gossypium hirsutum HOM05D004235 ORTHO05D005157 6.3e-76 288.1 224 62.9
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.4e-75 287.0 206 68.0
Duzib150G0514 Durio zibethinus HOM05D004235 ORTHO05D005157 1.4e-75 287.0 224 60.3
Zm00001eb162240 Zea mays HOM05D004235 ORTHO05D005157 5.4e-75 285.0 191 71.7
Duzib168G1665 Durio zibethinus HOM05D004235 ORTHO05D005157 1.6e-74 283.5 224 62.1
COL.COLO4_18247 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.6e-71 273.5 221 59.7
Migut.J00437 Erythranthe guttata HOM05D004235 ORTHO05D005157 2.3e-70 269.6 219 60.3
Thhalv10012682m.g Eutrema salsugineum HOM05D004235 ORTHO05D005157 1.2e-69 267.3 224 62.1
Sc18g0001680 Simmondsia chinensis HOM05D004235 ORTHO05D005157 2.0e-69 266.5 224 56.7
CSS0028903 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.4e-67 260.4 201 65.7
CSS0008185 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.2e-66 257.3 234 58.1
Hund09051 Selenicereus undatus HOM05D004235 ORTHO05D005157 2.5e-64 249.6 242 53.3
COL.COLO4_18244 Corchorus olitorius HOM05D004235 ORTHO05D005157 8.0e-63 244.6 224 53.1
CBR_g39508 Chara braunii HOM05D004235 ORTHO05D005157 4.0e-62 242.3 234 53.4
Ah.09g230260 Amaranthus hybridus HOM05D004235 ORTHO05D005157 7.5e-61 238.0 224 54.0
EL10Ac8g18336 Beta vulgaris HOM05D004235 ORTHO05D005157 8.3e-60 234.6 224 53.6
AUR62021351 Chenopodium quinoa HOM05D004235 ORTHO05D005157 7.0e-59 231.5 224 53.6
AUR62033265 Chenopodium quinoa HOM05D004235 ORTHO05D005157 7.0e-59 231.5 224 53.6
Medtr8g101950 Medicago truncatula HOM05D004235 ORTHO05D005157 7.8e-58 228.0 224 54.9
Sc18g0001660 Simmondsia chinensis HOM05D004235 ORTHO05D005157 8.0e-55 218.0 181 57.5
COL.COLO4_18245 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.0e-49 201.1 184 54.3
MCO05G244 Micromonas commoda HOM05D004235 ORTHO05D005157 4.0e-38 162.5 225 40.4
RcHm_v2.0_Chr2g0091881 Rosa chinensis HOM05D004235 ORTHO05D005157 8.9e-38 161.4 112 70.5
MBI12_g34172_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 1.5e-32 144.1 127 58.3
MBI12_g07780_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 3.0e-25 119.8 93 61.3
HanXRQChr07g0193421 Helianthus annuus HOM05D004235 ORTHO05D005157 2.1e-23 113.6 97 61.9
COL.COLO4_18248 Corchorus olitorius HOM05D004235 ORTHO05D005157 3.8e-20 102.8 86 61.6
MBI14_g38886_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 2.4e-14 83.6 46 82.6
MBI14_g45694_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 4.9e-12 75.9 46 78.3
Pp3c22_21190 Physcomitrium patens HOM05D004235 ORTHO05D005157 1.4e-11 74.3 61 60.7
MBI14_g11330_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 1.9e-11 73.9 46 73.9
PGSC0003DMG400037643 Solanum tuberosum HOM05D004235 ORTHO05D005157 3.9e-09 66.2 237 27.8
Gohir.D01G086200 Gossypium hirsutum HOM05D003632 ORTHO05D005497 1.8e-06 57.4 273 21.6
Gorai.002G111600 Gossypium raimondii HOM05D003632 ORTHO05D005497 1.8e-06 57.4 271 21.4
Gohir.A01G101300 Gossypium hirsutum HOM05D003632 ORTHO05D005497 3.1e-06 56.6 271 22.5
HanXRQChr04g0119021 Helianthus annuus HOM05D003632 ORTHO05D005497 3.1e-06 56.6 270 21.9
SalBow1G1353 Salvia bowleyana HOM05D003632 ORTHO05D005497 5.3e-06 55.8 271 22.9
Pp3c16_2100 Physcomitrium patens HOM05D003632 ORTHO05D005497 9.0e-06 55.1 181 24.3


User provided reference genes

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