Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.4e-69 266.2 131 100.0
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 6.2e-38 161.0 87 86.2
SEGI_40393 Sequoiadendron giganteum HOM05D000040 ORTHO05D006429 1.7e-27 126.3 137 57.7
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 2.5e-18 95.9 74 54.1
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 3.2e-18 95.5 137 44.5
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 2.7e-17 92.4 140 35.0
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 2.5e-15 85.9 103 39.8
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 7.4e-15 84.3 134 36.6
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 1.6e-14 83.2 120 38.3
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 2.8e-14 82.4 125 34.4
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 4.8e-14 81.6 139 34.5
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 1.1e-13 80.5 136 39.7
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 1.8e-13 79.7 135 35.6
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 3.1e-13 79.0 137 34.3
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 4.1e-13 78.6 137 33.6
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 6.9e-13 77.8 124 33.1
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 6.9e-13 77.8 131 32.1
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 9.0e-13 77.4 126 34.1
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 9.0e-13 77.4 133 35.3
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 9.0e-13 77.4 125 34.4
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 9.0e-13 77.4 135 32.6
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 1.2e-12 77.0 134 35.1
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 1.2e-12 77.0 124 33.1
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 1.2e-12 77.0 125 36.0
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 1.2e-12 77.0 133 34.6
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 1.2e-12 77.0 134 33.6
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.2e-12 77.0 117 34.2
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 1.5e-12 76.6 128 35.2
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 1.5e-12 76.6 89 39.3
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 1.5e-12 76.6 93 45.2
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 2.0e-12 76.3 137 32.8
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 2.0e-12 76.3 127 34.6
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 2.6e-12 75.9 131 31.3
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 3.4e-12 75.5 137 32.1
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 3.4e-12 75.5 137 32.1
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 4.5e-12 75.1 132 34.1
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 4.5e-12 75.1 66 47.0
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 5.9e-12 74.7 127 31.5
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 5.9e-12 74.7 131 35.9
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 5.9e-12 74.7 136 36.0
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 5.9e-12 74.7 130 33.8
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 7.6e-12 74.3 131 32.8
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 7.6e-12 74.3 137 32.8
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 7.6e-12 74.3 133 33.1
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 7.6e-12 74.3 132 32.6
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 7.6e-12 74.3 134 32.1
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 7.6e-12 74.3 68 47.1
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 1.0e-11 73.9 66 43.9
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 1.0e-11 73.9 129 32.6
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 1.3e-11 73.6 134 36.6
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 1.3e-11 73.6 66 43.9
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 1.7e-11 73.2 137 31.4
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 1.7e-11 73.2 65 52.3
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 1.7e-11 73.2 129 31.0
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 2.2e-11 72.8 135 33.3
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 2.2e-11 72.8 111 36.0
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 2.9e-11 72.4 125 30.4
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 2.9e-11 72.4 127 31.5
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 2.9e-11 72.4 140 32.9
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 2.9e-11 72.4 133 31.6
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 2.9e-11 72.4 77 48.1
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 2.9e-11 72.4 131 30.5
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 2.9e-11 72.4 66 43.9
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 3.8e-11 72.0 137 30.7
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 3.8e-11 72.0 133 32.3
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 3.8e-11 72.0 87 33.3
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 5.0e-11 71.6 131 29.8
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 5.0e-11 71.6 132 34.8
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 6.5e-11 71.2 122 32.0
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 6.5e-11 71.2 131 32.1
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 6.5e-11 71.2 119 36.1
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 6.5e-11 71.2 135 32.6
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 8.4e-11 70.9 135 31.1
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 8.4e-11 70.9 70 42.9
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 8.4e-11 70.9 133 30.8
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 1.1e-10 70.5 68 47.1
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 1.1e-10 70.5 129 31.8
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 1.1e-10 70.5 114 31.6
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.1e-10 70.5 130 32.3
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 1.1e-10 70.5 131 32.8
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 1.1e-10 70.5 65 43.1
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.4e-10 70.1 134 32.1
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.4e-10 70.1 134 30.6
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.4e-10 70.1 135 31.1
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 1.9e-10 69.7 131 31.3
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 1.9e-10 69.7 90 34.4
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.9e-10 69.7 62 50.0
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 1.9e-10 69.7 116 32.8
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 1.9e-10 69.7 135 34.1
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.5e-10 69.3 131 29.8
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.5e-10 69.3 138 31.2
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 2.5e-10 69.3 127 31.5
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 3.2e-10 68.9 132 31.8
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 3.2e-10 68.9 131 35.1
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 3.2e-10 68.9 131 29.8
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 4.2e-10 68.6 108 34.3
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 4.2e-10 68.6 90 35.6
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 4.2e-10 68.6 66 47.0
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 4.2e-10 68.6 131 29.8
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 4.2e-10 68.6 60 43.3
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 4.2e-10 68.6 134 32.1
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 5.5e-10 68.2 131 29.0
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 5.5e-10 68.2 60 43.3
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 5.5e-10 68.2 135 33.3
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 7.2e-10 67.8 81 38.3
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 7.2e-10 67.8 98 36.7
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 9.3e-10 67.4 127 29.9
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 9.3e-10 67.4 127 31.5
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 9.3e-10 67.4 141 31.2
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 9.3e-10 67.4 131 32.1
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 1.2e-09 67.0 68 45.6
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.6e-09 66.6 90 33.3
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.6e-09 66.6 127 31.5
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 1.6e-09 66.6 66 42.4
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 1.6e-09 66.6 137 31.4
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 1.6e-09 66.6 66 50.0
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 2.1e-09 66.2 134 29.9
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 2.7e-09 65.9 131 28.2
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 2.7e-09 65.9 66 40.9
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.7e-09 65.9 127 31.5
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.7e-09 65.9 131 29.0
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 3.5e-09 65.5 135 29.6
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 3.5e-09 65.5 89 36.0
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 3.5e-09 65.5 131 32.8
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 1.0e-08 63.9 67 49.3
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 1.3e-08 63.5 132 30.3
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 1.3e-08 63.5 131 26.7
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 1.8e-08 63.2 130 29.2
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.8e-08 63.2 51 52.9
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.3e-08 62.8 86 36.0
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 3.0e-08 62.4 53 47.2
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 5.1e-08 61.6 50 54.0
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 8.7e-08 60.8 115 33.9
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.9e-07 59.7 49 53.1
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 4.3e-07 58.5 134 26.9
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 8.2e-06 54.3 39 48.7


User provided reference genes

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