Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 0.0e+00 1523.5 893 100.0
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.4e-189 667.5 408 99.8
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 2.3e-131 474.2 520 53.1
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 4.3e-130 469.9 520 52.9
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.0e-128 465.3 532 51.3
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 9.8e-127 458.8 524 55.3
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.7e-126 458.0 520 53.8
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 6.4e-126 456.1 533 52.9
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 2.7e-124 450.7 524 53.1
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 3.9e-123 446.8 513 54.0
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 1.1e-122 445.3 527 53.7
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 1.9e-122 444.5 535 50.5
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 4.3e-122 443.4 526 53.8
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 1.1e-120 438.7 535 53.8
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 1.4e-120 438.3 530 54.3
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 3.1e-120 437.2 524 52.1
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 6.8e-120 436.0 527 49.1
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 1.2e-119 435.3 540 52.2
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 1.5e-119 434.9 532 54.3
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 1.5e-119 434.9 537 50.1
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.5e-119 434.9 529 53.5
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 2.6e-119 434.1 521 50.9
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 2.6e-119 434.1 530 52.6
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 2.6e-119 434.1 524 53.6
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 3.7e-118 430.3 541 54.7
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 1.9e-117 427.9 533 50.5
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 1.9e-117 427.9 533 50.5
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 1.9e-117 427.9 533 51.0
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 5.4e-117 426.4 544 53.9
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 9.2e-117 425.6 530 51.1
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 1.2e-116 425.2 539 47.9
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 3.5e-116 423.7 532 51.5
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 7.8e-116 422.5 532 48.5
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 7.8e-116 422.5 524 51.5
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 1.3e-115 421.8 497 54.1
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 2.3e-115 421.0 522 53.8
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 6.6e-115 419.5 523 50.7
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 3.3e-114 417.2 530 52.1
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 7.3e-114 416.0 531 47.8
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 1.2e-113 415.2 544 48.3
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 3.6e-113 413.7 518 49.0
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 6.2e-113 412.9 528 49.4
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 1.8e-112 411.4 532 52.1
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 5.2e-112 409.8 528 51.3
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 6.8e-112 409.5 526 53.0
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 2.0e-111 407.9 544 50.6
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.7e-110 404.8 544 49.3
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 2.2e-110 404.4 529 51.4
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 1.1e-109 402.1 502 54.6
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 3.2e-109 400.6 519 52.8
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 4.1e-109 400.2 537 51.4
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 1.6e-108 398.3 522 51.7
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 6.0e-108 396.4 530 52.8
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 5.1e-107 393.3 527 50.9
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 1.1e-106 392.1 568 47.5
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 1.5e-106 391.7 527 51.2
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 4.3e-106 390.2 561 46.3
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 5.6e-106 389.8 521 49.9
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 3.6e-105 387.1 526 48.3
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 8.1e-105 386.0 525 48.0
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 8.1e-105 386.0 447 52.6
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 1.4e-104 385.2 528 51.3
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 2.4e-104 384.4 521 50.5
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.2e-103 382.1 532 48.7
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 3.4e-103 380.6 484 52.7
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 5.8e-103 379.8 539 48.8
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.3e-102 378.6 452 50.0
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 4.2e-101 373.6 518 47.7
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.1e-100 371.3 529 48.4
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 3.5e-100 370.5 517 49.7
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.3e-99 368.6 515 45.8
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 3.9e-99 367.1 527 48.4
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 6.6e-99 366.3 547 47.2
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.1e-98 365.5 526 47.1
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 7.3e-98 362.8 491 48.5
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 2.1e-97 361.3 560 44.3
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 1.4e-96 358.6 522 46.0
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 1.4e-96 358.6 538 47.4
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 3.1e-96 357.5 514 49.2
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 3.1e-96 357.5 514 49.2
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 4.0e-96 357.1 518 44.0
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 9.0e-96 355.9 534 47.4
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 2.6e-95 354.4 301 61.8
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 3.4e-95 354.0 531 45.4
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 4.4e-95 353.6 515 46.8
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.3e-94 352.1 510 43.5
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.9e-93 348.2 548 41.6
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 4.2e-93 347.1 513 48.7
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 5.4e-93 346.7 560 45.0
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 3.5e-92 344.0 514 46.9
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 7.9e-92 342.8 514 46.5
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 3.9e-91 340.5 511 47.0
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 3.9e-91 340.5 525 43.6
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 3.9e-91 340.5 550 45.1
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 8.7e-91 339.3 538 47.8
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 1.5e-90 338.6 510 43.9
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 9.6e-90 335.9 514 47.7
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 3.6e-89 334.0 526 46.0
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 4.8e-89 333.6 517 43.7
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 3.1e-88 330.9 525 44.8
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 2.6e-87 327.8 517 46.6
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 9.9e-87 325.9 506 46.2
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 8.4e-86 322.8 521 44.3
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 2.1e-84 318.2 460 48.0
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 1.9e-82 311.6 562 41.8
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.2e-79 302.4 425 48.9
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 1.8e-75 288.5 527 38.0
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 5.1e-75 287.0 210 63.8
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 1.1e-66 259.2 691 34.0
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 3.6e-60 237.7 195 59.5
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 5.7e-58 230.3 383 46.5
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 3.1e-56 224.6 215 55.8
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 2.7e-52 211.5 490 34.5
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 7.9e-52 209.9 600 33.7
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 2.4e-48 198.4 192 50.5
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 4.2e-45 187.6 255 42.0
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 2.1e-44 185.3 161 59.0
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 1.5e-42 179.1 291 39.2
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 3.7e-41 174.5 201 46.3
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 9.8e-34 149.8 273 47.6
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 8.3e-33 146.7 254 46.9
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.2e-28 132.9 109 58.7
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.4e-27 129.4 264 45.8
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 4.0e-27 127.9 229 40.2
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 5.2e-27 127.5 521 25.7
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 1.1e-24 119.8 115 52.2
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.6e-23 115.9 198 33.8
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 2.5e-21 108.6 91 60.4
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 5.6e-21 107.5 345 31.0
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.7e-17 95.9 145 41.4
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 1.7e-17 95.9 114 47.4
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 3.7e-17 94.7 128 39.8
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 1.1e-16 93.2 116 47.4
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 2.7e-15 88.6 79 48.1
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 5.0e-14 84.3 284 37.0
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 3.6e-12 78.2 161 40.4
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 7.0e-08 63.9 59 50.8
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 4.6e-07 61.2 111 41.4
BraA03t12436Z Brassica rapa HOM05D004723 ORTHO05D019910 6.0e-07 60.8 96 39.6
BcaC01g04505 Brassica carinata HOM05D004723 ORTHO05D019910 1.0e-06 60.1 96 36.5
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 1.7e-06 59.3 210 29.5
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 3.9e-06 58.2 50 54.0


User provided reference genes

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