Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_07987 Sequoiadendron giganteum HOM05D000062 ORTHO05D387286 7.4e-37 157.1 108 100.0
FAN03G2252 Fragaria x ananassa HOM05D000062 ORTHO05D000043 3.6e-07 58.5 59 55.9
AagrBONN_evm.TU.Sc2ySwM_340.350 Anthoceros agrestis HOM05D000062 ORTHO05D000043 1.0e-06 57.0 59 54.2
FvH4_7g22130 Fragaria vesca HOM05D000062 ORTHO05D000043 1.0e-06 57.0 59 54.2
FAN01G0477 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.0e-06 57.0 59 54.2
FAN01G3026 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.0e-06 57.0 59 54.2
FAN06G4420 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.0e-06 57.0 59 54.2
FAN06G4908 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.0e-06 57.0 59 54.2
Pp3c3_26570 Physcomitrium patens HOM05D000062 ORTHO05D000043 1.0e-06 57.0 59 52.5
Pp3c3_26590 Physcomitrium patens HOM05D000062 ORTHO05D000043 1.0e-06 57.0 59 52.5
Prupe.2G233500 Prunus persica HOM05D000062 ORTHO05D000043 1.4e-06 56.6 59 54.2
MSTRG.5675 Avicennia marina HOM05D000062 ORTHO05D000043 1.8e-06 56.2 59 52.5
RcHm_v2.0_Chr1g0366521 Rosa chinensis HOM05D000062 ORTHO05D000043 1.8e-06 56.2 59 52.5
MSTRG.8247 Avicennia marina HOM05D000062 ORTHO05D000043 2.3e-06 55.8 59 54.2
Psat3g182640 Pisum sativum HOM05D000062 ORTHO05D000043 2.3e-06 55.8 59 54.2
MSTRG.299 Avicennia marina HOM05D000062 ORTHO05D000043 3.0e-06 55.5 59 52.5
Glyma.12G064000 Glycine max HOM05D000062 ORTHO05D000043 3.0e-06 55.5 59 54.2
Lj2P1059T52 Lonicera japonica HOM05D000062 ORTHO05D000043 3.0e-06 55.5 59 52.5
MD01G1126500 Malus domestica HOM05D000062 ORTHO05D000043 3.0e-06 55.5 59 52.5
MD07G1196500 Malus domestica HOM05D000062 ORTHO05D000043 3.0e-06 55.5 59 52.5
Manes.10G031400 Manihot esculenta HOM05D000062 ORTHO05D000043 3.0e-06 55.5 59 52.5
Mapoly0015s0120 Marchantia polymorpha HOM05D000062 ORTHO05D000043 3.0e-06 55.5 59 50.8
Pp3c11_6620 Physcomitrium patens HOM05D000062 ORTHO05D000043 3.0e-06 55.5 59 50.8
Solyc11g066060.3 Solanum lycopersicum HOM05D000062 ORTHO05D000043 3.0e-06 55.5 59 54.2
Sopen11g025800 Solanum pennellii HOM05D000062 ORTHO05D000043 3.0e-06 55.5 59 54.2
TPR.G14472 Trifolium pratense HOM05D000062 ORTHO05D000043 3.0e-06 55.5 59 54.2
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 4.0e-06 55.1 59 52.5
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 4.0e-06 55.1 59 52.5
BolC3t16847H Brassica oleracea HOM05D000062 ORTHO05D000043 4.0e-06 55.1 59 52.5
Os01g0840100 Oryza sativa ssp. japonica HOM05D000062 ORTHO05D000043 4.0e-06 55.1 59 52.5
Pp3c7_26760 Physcomitrium patens HOM05D000062 ORTHO05D000043 4.0e-06 55.1 59 50.8
Psat3g049760 Pisum sativum HOM05D000062 ORTHO05D000043 4.0e-06 55.1 59 52.5
PGR044G0533 Punica granatum HOM05D000062 ORTHO05D000043 4.0e-06 55.1 59 54.2
PGR044G1060 Punica granatum HOM05D000062 ORTHO05D000043 4.0e-06 55.1 59 54.2
PGSC0003DMG400000398 Solanum tuberosum HOM05D000062 ORTHO05D000043 4.0e-06 55.1 59 54.2
BraA03t12922Z Brassica rapa HOM05D000062 ORTHO05D000043 5.2e-06 54.7 59 52.5
Ca_08775_v3 Cicer arietinum L. HOM05D000062 ORTHO05D000043 5.2e-06 54.7 59 52.5
Ca_30731_v3 Cicer arietinum L. HOM05D000062 ORTHO05D000043 5.2e-06 54.7 59 52.5
Gohir.A09G157200 Gossypium hirsutum HOM05D000062 ORTHO05D000043 5.2e-06 54.7 59 52.5
Mapoly0011s0125 Marchantia polymorpha HOM05D000062 ORTHO05D000043 5.2e-06 54.7 59 49.2
Medtr4g063710 Medicago truncatula HOM05D000062 ORTHO05D000043 5.2e-06 54.7 59 54.2
Medtr4g063720 Medicago truncatula HOM05D000062 ORTHO05D000043 5.2e-06 54.7 59 54.2
Peaxi162Scf00406g00042 Petunia axillaris HOM05D000062 ORTHO05D000043 5.2e-06 54.7 59 52.5
Psat3g049640 Pisum sativum HOM05D000062 ORTHO05D000043 5.2e-06 54.7 59 52.5
SalBow3G2103 Salvia bowleyana HOM05D000062 ORTHO05D000043 5.2e-06 54.7 59 52.5
SEGI_21442 Sequoiadendron giganteum HOM05D000062 ORTHO05D000043 5.2e-06 54.7 59 49.2
Thecc.09G324300 Theobroma cacao HOM05D000062 ORTHO05D000043 5.2e-06 54.7 59 54.2
arahy.Tifrunner.gnm1.ann1.MDA3K5 Arachis hypogaea HOM05D000062 ORTHO05D000043 6.7e-06 54.3 59 52.5
arahy.Tifrunner.gnm1.ann1.MLH34E Arachis hypogaea HOM05D000062 ORTHO05D000043 6.7e-06 54.3 59 52.5
MSTRG.10266 Avicennia marina HOM05D000062 ORTHO05D000043 6.7e-06 54.3 59 49.2
Glyma.11G140500 Glycine max HOM05D000062 ORTHO05D000043 6.7e-06 54.3 59 52.5
Lj3g0015422 Lotus japonicus HOM05D000062 ORTHO05D000043 6.7e-06 54.3 59 52.5
QL01p032529 Quercus lobata HOM05D000062 ORTHO05D000043 6.7e-06 54.3 59 52.5
SMO174G0253 Selaginella moellendorffii HOM05D000062 ORTHO05D000043 6.7e-06 54.3 59 52.5
SMO296G0003 Selaginella moellendorffii HOM05D000062 ORTHO05D000043 6.7e-06 54.3 59 52.5
Sc20g0002640 Simmondsia chinensis HOM05D000062 ORTHO05D000043 6.7e-06 54.3 59 52.5
SGA_v2.0_scaffold75G24938 Striga asiatica HOM05D000062 ORTHO05D000043 6.7e-06 54.3 59 52.5
TWI15G1077 Tripterygium wilfordii HOM05D000062 ORTHO05D000043 6.7e-06 54.3 59 52.5
Aqoxy1G02284 Aquilegia oxysepala HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 50.8
Aqoxy4G02958 Aquilegia oxysepala HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 50.8
AL3G24230 Arabidopsis lyrata HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 50.8
AT3G12580 Arabidopsis thaliana HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 50.8
arahy.Tifrunner.gnm1.ann1.18TD37 Arachis hypogaea HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 52.5
arahy.Tifrunner.gnm1.ann1.82UWY2 Arachis hypogaea HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 52.5
CARHR087080 Cardamine hirsuta HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 50.8
Ciclev10033622m.g Citrus clementina HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 52.5
Eucgr.L03563 Eucalyptus grandis HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 54.2
Thhalv10020257m.g Eutrema salsugineum HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 50.8
Gohir.A11G326300 Gossypium hirsutum HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 52.5
Oeu059727.1 Olea europaea HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 52.5
PSO170G0373 Papaver somniferum HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 52.5
PSO407G0420 Papaver somniferum HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 52.5
Pp3c7_22170 Physcomitrium patens HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 49.2
Psat3g183720 Pisum sativum HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 52.5
Sp3g10720 Schrenkiella parvula HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 50.8
Hund12536 Selenicereus undatus HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 50.8
TAR633G1198 Trochodendron aralioides HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 52.5
Zm00001eb148420 Zea mays HOM05D000062 ORTHO05D000043 8.8e-06 53.9 59 50.8


User provided reference genes

Program Settings