Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 7.1e-270 933.3 469 100.0
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 4.3e-182 641.7 468 70.9
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 2.9e-178 629.0 439 72.0
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 8.4e-178 627.5 467 69.4
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.9e-177 626.3 471 69.0
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 1.6e-176 623.2 442 71.7
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 2.1e-176 622.9 471 68.6
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 7.8e-176 620.9 472 67.2
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 1.0e-175 620.5 472 66.9
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.3e-175 620.2 458 69.2
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 2.3e-175 619.4 463 67.6
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.3e-175 619.4 439 70.6
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 3.0e-175 619.0 439 70.6
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.0e-175 619.0 473 68.3
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 3.9e-175 618.6 469 67.6
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 5.1e-175 618.2 471 68.2
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 1.5e-174 616.7 468 67.7
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 1.5e-174 616.7 435 72.0
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 1.9e-174 616.3 468 68.2
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 3.3e-174 615.5 439 70.4
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 4.3e-174 615.1 465 67.7
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.3e-174 614.4 468 66.9
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 1.3e-173 613.6 462 67.7
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 2.1e-173 612.8 470 67.4
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 3.6e-173 612.1 466 67.4
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 6.2e-173 611.3 461 66.8
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 8.1e-173 610.9 465 66.0
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.4e-172 610.1 463 66.1
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.8e-172 609.8 461 67.2
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 1.8e-172 609.8 445 67.9
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 9.0e-172 607.4 467 66.2
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.2e-171 607.1 463 69.1
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 1.2e-171 607.1 468 66.5
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.5e-171 606.7 468 66.9
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 4.5e-171 605.1 461 67.0
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 4.5e-171 605.1 466 66.7
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 9.9e-171 604.0 462 66.7
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 9.9e-171 604.0 477 65.8
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.3e-170 603.6 452 68.6
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 1.7e-170 603.2 465 66.7
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 1.7e-170 603.2 466 66.7
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 2.2e-170 602.8 460 67.0
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 2.9e-170 602.4 458 66.2
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.9e-170 602.4 467 66.2
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 3.8e-170 602.1 464 65.9
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 6.4e-170 601.3 472 65.9
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 8.4e-170 600.9 463 65.9
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 1.9e-169 599.7 462 66.0
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 4.2e-169 598.6 464 65.9
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 4.2e-169 598.6 438 68.7
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 4.2e-169 598.6 454 67.6
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 5.4e-169 598.2 461 66.6
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 9.3e-169 597.4 465 66.0
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 9.3e-169 597.4 470 66.2
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 1.6e-168 596.7 467 66.0
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 1.6e-168 596.7 437 68.6
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 3.5e-168 595.5 469 65.9
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 7.9e-168 594.3 465 65.8
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 7.9e-168 594.3 465 65.8
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.0e-167 594.0 442 68.8
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.0e-167 594.0 467 65.5
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 1.3e-167 593.6 465 65.8
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 1.3e-167 593.6 465 65.8
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 1.3e-167 593.6 467 65.3
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 1.3e-167 593.6 466 65.2
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 1.3e-167 593.6 453 66.4
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 1.8e-167 593.2 465 66.5
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.8e-167 593.2 467 65.1
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 2.3e-167 592.8 465 65.6
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 2.3e-167 592.8 442 67.4
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 3.0e-167 592.4 465 65.6
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 6.7e-167 591.3 467 65.1
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 6.7e-167 591.3 463 65.7
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 1.1e-166 590.5 465 65.4
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 7.4e-166 587.8 437 68.0
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 2.1e-165 586.3 465 65.4
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 2.8e-165 585.9 455 65.9
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.8e-165 585.1 423 68.6
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 4.8e-165 585.1 434 67.1
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.1e-164 583.9 437 68.4
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.4e-164 583.6 464 64.7
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 6.9e-164 581.3 471 65.2
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 1.2e-163 580.5 463 64.8
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 2.0e-163 579.7 473 64.5
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 4.5e-163 578.6 455 64.8
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 5.8e-163 578.2 462 64.9
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 6.4e-162 574.7 457 64.1
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 2.5e-161 572.8 455 65.7
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 3.2e-161 572.4 457 64.6
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 9.3e-161 570.9 455 65.1
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 1.2e-160 570.5 470 63.2
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 2.7e-160 569.3 473 63.8
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 5.6e-158 561.6 460 63.5
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 7.4e-158 561.2 474 63.1
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 9.6e-158 560.8 475 62.7
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 2.1e-157 559.7 474 62.9
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 2.8e-157 559.3 475 63.2
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 4.0e-156 555.4 434 66.1
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 6.9e-156 554.7 477 62.5
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 1.5e-155 553.5 474 62.7
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.5e-155 553.5 454 63.0
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 2.0e-155 553.1 471 62.0
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 3.4e-155 552.4 474 62.4
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 5.8e-155 551.6 446 62.3
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 4.9e-154 548.5 455 62.4
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 8.4e-154 547.7 463 63.3
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.4e-153 547.0 407 66.8
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 4.2e-153 545.4 475 60.8
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 7.1e-153 544.7 501 57.9
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.1e-152 543.1 465 61.3
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 4.6e-152 542.0 564 52.8
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 1.0e-151 540.8 446 61.0
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 1.3e-151 540.4 424 63.0
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.3e-151 540.4 445 61.3
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 6.7e-151 538.1 466 61.6
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 6.7e-151 538.1 446 61.0
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 9.0e-148 527.7 467 59.7
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.2e-146 523.1 427 62.5
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 7.9e-144 514.6 437 61.6
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 5.1e-143 511.9 437 61.1
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 1.3e-138 497.3 460 57.6
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.2e-136 490.7 379 66.5
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.7e-136 489.6 447 57.0
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 6.1e-136 488.4 365 68.2
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.1e-134 484.2 425 58.6
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 8.2e-133 478.0 340 71.5
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.4e-129 467.2 370 65.1
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 2.3e-127 459.9 416 58.9
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 2.8e-125 453.0 483 53.6
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 8.2e-125 451.4 352 64.8
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.9e-114 416.4 453 50.8
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 7.5e-110 401.7 413 54.5
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 1.7e-109 400.6 333 60.7
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.8e-96 356.7 320 58.8
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.8e-87 325.5 352 51.7
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 7.5e-86 322.0 254 65.4
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 3.4e-78 296.6 209 70.3
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 2.2e-77 293.9 212 70.3
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 1.4e-71 274.6 468 39.1
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 1.2e-67 261.5 275 53.8
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 6.6e-66 255.8 197 65.0
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 5.4e-60 236.1 177 67.2
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 2.5e-49 200.7 160 66.2
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 6.7e-42 176.0 135 66.7
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 1.0e-37 162.2 218 45.4
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 3.3e-33 147.1 156 51.3
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 9.0e-31 139.0 155 51.6
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 1.0e-21 109.0 61 86.9
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.2e-08 64.7 55 60.0


User provided reference genes

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