Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 2.9e-138 495.4 278 100.0
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.5e-115 418.7 278 83.8
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.6e-115 418.3 278 83.8
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 1.0e-114 417.2 278 83.5
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.0e-114 417.2 278 83.5
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 1.3e-114 416.8 278 84.2
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 2.3e-114 416.0 278 82.7
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 3.0e-114 415.6 278 83.5
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 3.0e-114 415.6 278 82.7
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 3.9e-114 415.2 278 82.7
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.1e-114 414.8 279 83.5
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 5.1e-114 414.8 278 83.1
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 6.6e-114 414.5 278 83.8
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 6.6e-114 414.5 278 83.1
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 8.6e-114 414.1 279 83.5
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.1e-113 413.7 278 82.7
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 1.1e-113 413.7 278 81.3
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.5e-113 413.3 278 82.7
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.5e-113 413.3 278 83.1
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.5e-113 413.3 278 83.1
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 1.9e-113 412.9 278 83.1
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 2.5e-113 412.5 279 83.9
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 2.5e-113 412.5 279 83.9
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 3.3e-113 412.1 278 83.1
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 4.3e-113 411.8 279 82.8
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 5.6e-113 411.4 278 82.4
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 7.3e-113 411.0 278 82.7
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 7.3e-113 411.0 278 81.3
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 7.3e-113 411.0 278 82.4
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 7.3e-113 411.0 278 82.0
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 9.5e-113 410.6 278 81.3
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 9.5e-113 410.6 277 82.3
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 1.2e-112 410.2 278 83.5
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 1.2e-112 410.2 278 83.5
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.6e-112 409.8 278 83.1
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 2.1e-112 409.5 278 82.0
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.1e-112 409.5 277 83.0
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 2.8e-112 409.1 279 83.2
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 2.8e-112 409.1 278 81.7
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 3.6e-112 408.7 276 82.2
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 4.7e-112 408.3 278 82.0
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 6.2e-112 407.9 278 82.4
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 6.2e-112 407.9 278 82.0
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 6.2e-112 407.9 278 81.7
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 8.1e-112 407.5 278 80.6
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 1.1e-111 407.1 278 81.7
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.1e-111 407.1 278 83.1
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.4e-111 406.8 276 81.9
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 1.4e-111 406.8 278 81.3
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 1.4e-111 406.8 278 81.7
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.8e-111 406.4 278 82.0
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.8e-111 406.4 276 81.2
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.8e-111 406.4 276 81.2
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 1.8e-111 406.4 278 81.3
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 2.4e-111 406.0 278 81.3
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 3.1e-111 405.6 278 79.9
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 4.0e-111 405.2 278 82.4
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 6.8e-111 404.4 278 81.3
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 1.5e-110 403.3 278 81.7
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 1.5e-110 403.3 278 80.2
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.6e-110 402.5 278 80.2
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 3.4e-110 402.1 278 80.9
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.4e-110 402.1 278 79.9
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 5.8e-110 401.4 283 80.2
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 7.6e-110 401.0 278 80.9
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 7.6e-110 401.0 278 81.3
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 1.3e-109 400.2 278 80.9
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 2.9e-109 399.1 278 79.5
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 2.9e-109 399.1 278 80.2
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 3.8e-109 398.7 281 81.1
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 3.8e-109 398.7 278 79.9
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 4.9e-109 398.3 261 85.4
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 3.2e-108 395.6 278 78.8
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.6e-107 393.3 273 81.7
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 1.7e-106 389.8 302 73.8
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 3.3e-105 385.6 322 71.4
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 2.1e-104 382.9 270 80.4
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 2.8e-104 382.5 274 79.2
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 4.7e-104 381.7 278 73.4
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 6.2e-104 381.3 279 77.1
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 8.1e-104 380.9 321 69.8
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 8.1e-104 380.9 278 79.1
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 8.1e-104 380.9 261 82.8
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.4e-103 380.2 265 78.9
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.8e-103 379.8 261 82.0
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 2.4e-103 379.4 319 70.5
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 4.0e-103 378.6 278 75.9
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 9.9e-102 374.0 319 64.9
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 6.4e-101 371.3 278 74.1
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 1.4e-100 370.2 256 81.2
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 3.2e-100 369.0 256 80.9
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 3.2e-100 369.0 280 74.3
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 4.2e-100 368.6 278 75.2
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 5.4e-100 368.2 276 71.7
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.2e-99 367.1 275 73.1
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.5e-99 365.5 268 72.8
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 6.0e-99 364.8 281 74.4
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 1.0e-98 364.0 300 66.7
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 6.6e-98 361.3 278 73.4
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.1e-95 354.0 354 58.5
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 3.1e-95 352.4 261 77.4
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 3.1e-95 352.4 256 78.1
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 2.6e-94 349.4 261 75.1
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 5.8e-94 348.2 268 73.1
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 4.9e-93 345.1 261 72.4
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 7.1e-92 341.3 231 82.3
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 2.7e-91 339.3 278 68.0
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 3.0e-90 335.9 332 63.3
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 3.9e-90 335.5 232 82.3
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 4.3e-89 332.0 281 66.2
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 6.2e-88 328.2 223 84.3
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.8e-87 326.6 277 62.5
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 2.4e-87 326.2 284 66.9
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.9e-85 319.3 251 74.1
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.9e-85 319.3 251 74.1
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 4.2e-84 315.5 223 81.2
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 4.6e-83 312.0 223 81.2
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.4e-78 295.8 314 60.2
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 3.8e-77 292.4 275 64.7
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 8.4e-77 291.2 275 57.8
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.2e-76 288.9 275 64.4
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 8.8e-66 254.6 259 56.8
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 8.2e-64 248.1 287 50.5
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 2.4e-63 246.5 188 73.4
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 4.7e-59 232.3 283 50.5
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 4.4e-57 225.7 157 77.1
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 1.2e-54 217.6 182 72.5
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 5.0e-53 212.2 138 81.2
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 8.8e-50 201.4 146 80.8
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 9.7e-49 198.0 132 77.3
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.1e-47 192.6 300 44.3
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 1.1e-44 184.5 130 72.3
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 1.5e-41 174.1 106 83.0
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 8.3e-40 168.3 97 88.7
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 3.1e-39 166.4 89 94.4
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 1.2e-33 147.9 83 89.2
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.8e-31 140.6 152 57.9
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 4.2e-28 129.4 74 87.8
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 4.2e-28 129.4 74 87.8
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 4.2e-28 129.4 80 81.2
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.2e-24 117.1 72 79.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 1.2e-22 111.3 259 35.5
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 1.1e-20 104.8 158 44.9
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 1.9e-20 104.0 149 47.7
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 2.3e-18 97.1 123 50.4
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 6.8e-18 95.5 147 38.8
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.6e-17 93.6 71 83.1
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 2.6e-17 93.6 157 40.8
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 2.6e-17 93.6 151 38.4
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 3.4e-17 93.2 158 39.2
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.9e-16 90.1 71 77.5
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 4.9e-16 89.4 57 75.4
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 2.4e-15 87.0 76 65.8
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.0e-15 85.5 155 36.1
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.3e-13 80.5 70 64.3
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 8.6e-13 78.6 46 78.3
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.1e-12 78.2 162 36.4
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.3e-12 76.6 160 38.1
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.3e-12 76.3 46 82.6
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 4.0e-10 69.7 267 30.3
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 5.2e-10 69.3 43 76.7
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.8e-09 65.9 140 42.1


User provided reference genes

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