Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_07818 Sequoiadendron giganteum HOM05D000463 ORTHO05D385419 3.1e-92 341.7 157 100.0
HanXRQChr03g0078541 Helianthus annuus HOM05D000463 ORTHO05D001294 2.8e-08 62.8 56 41.1
Gohir.A01G064500 Gossypium hirsutum HOM05D000463 ORTHO05D001294 1.8e-07 60.1 82 36.6
ClCG07G002960 Citrullus lanatus HOM05D000463 ORTHO05D001294 2.3e-07 59.7 68 38.2
Gorai.002G071500 Gossypium raimondii HOM05D000463 ORTHO05D001294 2.3e-07 59.7 82 36.6
MELO3C018740.2 Cucumis melo HOM05D000463 ORTHO05D001294 3.0e-07 59.3 68 38.2
CsaV3_7G004390 Cucumis sativus L. HOM05D000463 ORTHO05D001294 3.0e-07 59.3 68 38.2
Psat5g271400 Pisum sativum HOM05D000463 ORTHO05D001294 4.0e-07 58.9 62 37.1
RcHm_v2.0_Chr6g0262431 Rosa chinensis HOM05D000463 ORTHO05D025346 4.0e-07 58.9 55 45.5
Glyma.12G151200 Glycine max HOM05D000463 ORTHO05D001294 6.8e-07 58.2 61 42.6
Lsat_1_v5_gn_3_36721 Lactuca sativa HOM05D000463 ORTHO05D001294 8.9e-07 57.8 59 35.6
Phvul.011G157800 Phaseolus vulgaris HOM05D000463 ORTHO05D001294 8.9e-07 57.8 61 37.7
SGA_v2.0_scaffold15G07159 Striga asiatica HOM05D000463 ORTHO05D002084 8.9e-07 57.8 56 42.9
VMungo1127G0725 Vigna mungo HOM05D000463 ORTHO05D001294 8.9e-07 57.8 61 37.7
FAN16G3203 Fragaria x ananassa HOM05D000114 ORTHO05D001294 1.2e-06 57.4 62 40.3
MBI16_g20733_MAGBIO Magnolia biondii HOM05D000170 ORTHO05D002084 1.2e-06 57.4 56 42.9
TPR.G6441 Trifolium pratense HOM05D000463 ORTHO05D001294 1.2e-06 57.4 58 37.9
MSTRG.12914 Avicennia marina HOM05D000463 ORTHO05D001294 1.5e-06 57.0 61 39.3
Cre17.g739100 Chlamydomonas reinhardtii HOM05D000463 ORTHO05D002084 1.5e-06 57.0 56 41.1
Ca_27170_v3 Cicer arietinum L. HOM05D000463 ORTHO05D001294 1.5e-06 57.0 61 39.3
Gohir.D04G143800 Gossypium hirsutum HOM05D000463 ORTHO05D001294 1.5e-06 57.0 58 34.5
Gorai.012G129300 Gossypium raimondii HOM05D000463 ORTHO05D001294 1.5e-06 57.0 58 34.5
Lsat_1_v5_gn_7_21121 Lactuca sativa HOM05D000463 ORTHO05D001294 1.5e-06 57.0 58 39.7
Lsat_1_v5_gn_8_133421 Lactuca sativa HOM05D000463 ORTHO05D001294 1.5e-06 57.0 63 34.9
Lj1P845T24 Lonicera japonica HOM05D000463 ORTHO05D001294 1.5e-06 57.0 59 39.0
Medtr2g090325 Medicago truncatula HOM05D000463 ORTHO05D002084 1.5e-06 57.0 56 37.5
SMO263G0024 Selaginella moellendorffii HOM05D000463 ORTHO05D002084 1.5e-06 57.0 56 44.6
SGA_v2.0_scaffold100G29678 Striga asiatica HOM05D000463 ORTHO05D001294 1.5e-06 57.0 58 37.9
A09p02800 Brassica napus HOM05D000463 ORTHO05D001294 2.0e-06 56.6 89 29.2
COL.COLO4_30182 Corchorus olitorius HOM05D000463 ORTHO05D001294 2.0e-06 56.6 63 34.9
Gohir.A04G104100 Gossypium hirsutum HOM05D000463 ORTHO05D001294 2.0e-06 56.6 58 34.5
HanXRQChr12g0377131 Helianthus annuus HOM05D000463 ORTHO05D002084 2.0e-06 56.6 56 42.9
Lsat_1_v5_gn_3_93260 Lactuca sativa HOM05D000463 ORTHO05D002084 2.0e-06 56.6 56 44.6
Lsat_1_v5_gn_6_113401 Lactuca sativa HOM05D000463 ORTHO05D002084 2.0e-06 56.6 56 41.1
Medtr1g054280 Medicago truncatula HOM05D000463 ORTHO05D004638 2.0e-06 56.6 56 37.5
Prupe.3G137000 Prunus persica HOM05D000463 ORTHO05D001294 2.0e-06 56.6 64 37.5
Duzib248G0528 Durio zibethinus HOM05D000463 ORTHO05D001294 2.6e-06 56.2 63 33.3
MD11G1245000 Malus domestica HOM05D000463 ORTHO05D001294 2.6e-06 56.2 62 40.3
Peaxi162Scf00000g04012 Petunia axillaris HOM05D000463 ORTHO05D001294 2.6e-06 56.2 61 36.1
Peaxi162Scf00019g00142 Petunia axillaris HOM05D000463 ORTHO05D002084 2.6e-06 56.2 56 41.1
Sed0023694 Sechium edule HOM05D000463 ORTHO05D001294 2.6e-06 56.2 65 36.9
Solyc10g006960.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 2.6e-06 56.2 64 34.4
Hma1.2p1_0480F.1_g161840 Hydrangea macrophylla HOM05D000463 ORTHO05D001294 3.4e-06 55.8 62 33.9
Lj3g0009712 Lotus japonicus HOM05D000463 ORTHO05D001294 3.4e-06 55.8 61 36.1
Lalb_Chr01g0005241 Lupinus albus HOM05D000463 ORTHO05D001294 3.4e-06 55.8 58 36.2
MBI19_g23211_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D006826 3.4e-06 55.8 56 37.5
RcHm_v2.0_Chr2g0126321 Rosa chinensis HOM05D000463 ORTHO05D001294 3.4e-06 55.8 64 34.4
Sed0019455 Sechium edule HOM05D000463 ORTHO05D002084 3.4e-06 55.8 56 41.1
SEGI_14037 Sequoiadendron giganteum HOM05D000463 ORTHO05D002084 3.4e-06 55.8 56 42.9
THA.LOC104815958 Tarenaya hassleriana HOM05D000463 ORTHO05D001294 3.4e-06 55.8 63 38.1
Ah.04g164920 Amaranthus hybridus HOM05D000463 ORTHO05D001294 4.4e-06 55.5 62 35.5
ATR0680G199 Amborella trichopoda HOM05D000463 ORTHO05D002084 4.4e-06 55.5 56 37.5
COL.COLO4_26380 Corchorus olitorius HOM05D000463 ORTHO05D002084 4.4e-06 55.5 56 41.1
Duzib041G0402 Durio zibethinus HOM05D000463 ORTHO05D002084 4.4e-06 55.5 56 41.1
Gohir.A06G012300 Gossypium hirsutum HOM05D000463 ORTHO05D002084 4.4e-06 55.5 56 42.9
Gohir.D01G051600 Gossypium hirsutum HOM05D000463 ORTHO05D001294 4.4e-06 55.5 62 41.9
Gohir.D06G009700 Gossypium hirsutum HOM05D000463 ORTHO05D002084 4.4e-06 55.5 56 42.9
Gorai.010G012500 Gossypium raimondii HOM05D000463 ORTHO05D002084 4.4e-06 55.5 56 42.9
Lalb_Chr22g0356531 Lupinus albus HOM05D000463 ORTHO05D001294 4.4e-06 55.5 63 33.3
MBI19_g23212_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D002084 4.4e-06 55.5 56 39.3
Prupe.4G183300 Prunus persica HOM05D000463 ORTHO05D001294 4.4e-06 55.5 62 37.1
RcHm_v2.0_Chr5g0033921 Rosa chinensis HOM05D000463 ORTHO05D001294 4.4e-06 55.5 62 37.1
Sopen10g002870 Solanum pennellii HOM05D000463 ORTHO05D001294 4.4e-06 55.5 61 34.4
PGSC0003DMG400025033 Solanum tuberosum HOM05D000463 ORTHO05D001294 4.4e-06 55.5 61 34.4
Actinidia09857 Actinidia chinensis HOM05D000463 ORTHO05D001294 5.8e-06 55.1 63 33.3
Aa31LG5G2900 Aethionema arabicum HOM05D000463 ORTHO05D001294 5.8e-06 55.1 64 35.9
CANSAT25G0879 Cannabis sativa HOM05D000463 ORTHO05D002084 5.8e-06 55.1 56 42.9
CANSAT56G0930 Cannabis sativa HOM05D000463 ORTHO05D001294 5.8e-06 55.1 75 34.7
CiPaw.03G176400 Carya illinoinensis HOM05D000463 ORTHO05D001294 5.8e-06 55.1 60 36.7
Haze_13153 Corylus avellana HOM05D000463 ORTHO05D001294 5.8e-06 55.1 63 34.9
MELO3C013615.2 Cucumis melo HOM05D000463 ORTHO05D001294 5.8e-06 55.1 63 33.3
CsaV3_6G012970 Cucumis sativus L. HOM05D000463 ORTHO05D001294 5.8e-06 55.1 63 33.3
Duzib116G0145 Durio zibethinus HOM05D000463 ORTHO05D002084 5.8e-06 55.1 56 41.1
ECA246G5300 Erigeron canadensis HOM05D000463 ORTHO05D002084 5.8e-06 55.1 56 42.9
Migut.C00681 Erythranthe guttata HOM05D000463 ORTHO05D002084 5.8e-06 55.1 57 42.1
FvH4_3g20120 Fragaria vesca HOM05D000463 ORTHO05D001294 5.8e-06 55.1 62 38.7
FvH4_6g26170 Fragaria vesca HOM05D000463 ORTHO05D001294 5.8e-06 55.1 64 34.4
FAN05G3088 Fragaria x ananassa HOM05D000463 ORTHO05D001294 5.8e-06 55.1 64 34.4
FAN11G3693 Fragaria x ananassa HOM05D000114 ORTHO05D000075 5.8e-06 55.1 62 38.7
FAN21G3819 Fragaria x ananassa HOM05D000463 ORTHO05D001294 5.8e-06 55.1 62 38.7
FAN25G3867 Fragaria x ananassa HOM05D000463 ORTHO05D001294 5.8e-06 55.1 62 38.7
Gohir.A03G157200 Gossypium hirsutum HOM05D000463 ORTHO05D001294 5.8e-06 55.1 63 33.3
Gohir.D02G180500 Gossypium hirsutum HOM05D000463 ORTHO05D001294 5.8e-06 55.1 63 33.3
Gorai.002G129700 Gossypium raimondii HOM05D000463 ORTHO05D002084 5.8e-06 55.1 56 41.1
Gorai.005G202000 Gossypium raimondii HOM05D000463 ORTHO05D001294 5.8e-06 55.1 63 33.3
HanXRQChr17g0542551 Helianthus annuus HOM05D000463 ORTHO05D002084 5.8e-06 55.1 56 41.1
MD17G1241200 Malus domestica HOM05D000463 ORTHO05D001294 5.8e-06 55.1 64 32.8
Medtr2g090295 Medicago truncatula HOM05D000463 ORTHO05D001294 5.8e-06 55.1 62 33.9
Medtr2g090330 Medicago truncatula HOM05D000463 ORTHO05D001294 5.8e-06 55.1 59 35.6
Nitab4.5_0000207g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 5.8e-06 55.1 61 34.4
Nitab4.5_0002383g0090 Nicotiana tabacum HOM05D000463 ORTHO05D001294 5.8e-06 55.1 61 34.4
Oeu027317.1 Olea europaea HOM05D000273 ORTHO05D000198 5.8e-06 55.1 56 41.1
PSO541G6345 Papaver somniferum HOM05D000463 ORTHO05D002084 5.8e-06 55.1 58 43.1
Peaxi162Scf00027g00271 Petunia axillaris HOM05D000463 ORTHO05D001294 5.8e-06 55.1 61 34.4
Phvul.005G104200 Phaseolus vulgaris HOM05D000463 ORTHO05D001294 5.8e-06 55.1 61 34.4
Sed0010082 Sechium edule HOM05D000463 ORTHO05D002084 5.8e-06 55.1 56 41.1
Sed0022967 Sechium edule HOM05D000463 ORTHO05D001294 5.8e-06 55.1 64 35.9
Solyc07g063200.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 5.8e-06 55.1 61 34.4
Sopen07g031390 Solanum pennellii HOM05D000463 ORTHO05D001294 5.8e-06 55.1 61 34.4
SGA_v2.0_scaffold22G09722 Striga asiatica HOM05D000463 ORTHO05D001294 5.8e-06 55.1 58 37.9
SGA_v2.0_scaffold34G13827 Striga asiatica HOM05D000463 ORTHO05D001294 5.8e-06 55.1 62 35.5
Thecc.02G178700 Theobroma cacao HOM05D000463 ORTHO05D001294 5.8e-06 55.1 63 31.7
Thecc.08G021700 Theobroma cacao HOM05D000463 ORTHO05D002084 5.8e-06 55.1 56 41.1
unitig_85.g27231 Utricularia gibba HOM05D000463 ORTHO05D002084 5.8e-06 55.1 56 39.3
Zm00001eb032800 Zea mays HOM05D000463 ORTHO05D002084 5.8e-06 55.1 56 42.9
Actinidia35252 Actinidia chinensis HOM05D000300 ORTHO05D000383 7.5e-06 54.7 61 36.1
Aqoxy1G02474 Aquilegia oxysepala HOM05D000463 ORTHO05D001294 7.5e-06 54.7 61 36.1
BcaB01g01944 Brassica carinata HOM05D000463 ORTHO05D001294 7.5e-06 54.7 59 35.6
Cfa014606 Carpinus fangiana HOM05D000463 ORTHO05D001294 7.5e-06 54.7 63 33.3
AUR62029377 Chenopodium quinoa HOM05D000114 ORTHO05D000075 7.5e-06 54.7 61 34.4
AUR62034284 Chenopodium quinoa HOM05D000463 ORTHO05D001294 7.5e-06 54.7 61 34.4
COL.COLO4_09408 Corchorus olitorius HOM05D000463 ORTHO05D001294 7.5e-06 54.7 62 35.5
Duzib170G0669 Durio zibethinus HOM05D000463 ORTHO05D001294 7.5e-06 54.7 62 33.9
ECA240G1563 Erigeron canadensis HOM05D000463 ORTHO05D002084 7.5e-06 54.7 56 39.3
Migut.M00816 Erythranthe guttata HOM05D000463 ORTHO05D001294 7.5e-06 54.7 61 37.7
FvH4_2g07980 Fragaria vesca HOM05D000463 ORTHO05D025346 7.5e-06 54.7 46 45.7
FAN03G2615 Fragaria x ananassa HOM05D018076 ORTHO05D017947 7.5e-06 54.7 98 27.6
FAN24G2304 Fragaria x ananassa HOM05D000463 ORTHO05D025346 7.5e-06 54.7 46 45.7
HanXRQChr11g0346841 Helianthus annuus HOM05D000463 ORTHO05D001294 7.5e-06 54.7 63 36.5
Lsat_1_v5_gn_8_133561 Lactuca sativa HOM05D000463 ORTHO05D001294 7.5e-06 54.7 63 31.7
MD09G1248700 Malus domestica HOM05D000463 ORTHO05D001294 7.5e-06 54.7 64 32.8
Psat0s2135g0040 Pisum sativum HOM05D000463 ORTHO05D001294 7.5e-06 54.7 61 36.1
PGR142G2183 Punica granatum HOM05D000463 ORTHO05D001294 7.5e-06 54.7 62 32.3
QL08p038559 Quercus lobata HOM05D000463 ORTHO05D001294 7.5e-06 54.7 62 35.5
Sed0019527 Sechium edule HOM05D000463 ORTHO05D001294 7.5e-06 54.7 61 37.7
SEGI_07648 Sequoiadendron giganteum HOM05D000463 ORTHO05D002084 7.5e-06 54.7 56 39.3
SGA_v2.0_scaffold14G07053 Striga asiatica HOM05D000463 ORTHO05D002084 7.5e-06 54.7 56 41.1
TPR.G6457 Trifolium pratense HOM05D000463 ORTHO05D001294 7.5e-06 54.7 62 33.9
unitig_52.g17350 Utricularia gibba HOM05D000463 ORTHO05D001294 7.5e-06 54.7 60 36.7
Actinidia05628 Actinidia chinensis HOM05D000463 ORTHO05D001294 9.8e-06 54.3 61 37.7
ATR0733G137 Amborella trichopoda HOM05D000463 ORTHO05D002084 9.8e-06 54.3 56 41.1
AagrBONN_evm.TU.Sc2ySwM_344.4500 Anthoceros agrestis HOM05D000463 ORTHO05D002084 9.8e-06 54.3 56 41.1
MSTRG.15888 Avicennia marina HOM05D000463 ORTHO05D001294 9.8e-06 54.3 57 36.8
MSTRG.3395 Avicennia marina HOM05D000463 ORTHO05D002084 9.8e-06 54.3 56 37.5
CANSAT01G2622 Cannabis sativa HOM05D000463 ORTHO05D002084 9.8e-06 54.3 56 41.1
CiPaw.04G125500 Carya illinoinensis HOM05D000463 ORTHO05D001294 9.8e-06 54.3 63 33.3
CBR_g44551 Chara braunii HOM05D000463 ORTHO05D002084 9.8e-06 54.3 56 44.6
ClCG02G017600 Citrullus lanatus HOM05D000463 ORTHO05D001294 9.8e-06 54.3 64 34.4
Duzib093G2241 Durio zibethinus HOM05D000463 ORTHO05D002084 9.8e-06 54.3 56 41.1
Duzib132G0962 Durio zibethinus HOM05D000463 ORTHO05D001294 9.8e-06 54.3 63 31.7
Eucgr.A01812 Eucalyptus grandis HOM05D000463 ORTHO05D001294 9.8e-06 54.3 63 34.9
Nitab4.5_0004287g0040 Nicotiana tabacum HOM05D000463 ORTHO05D002084 9.8e-06 54.3 56 39.3
Oeu009603.2 Olea europaea HOM05D000463 ORTHO05D002084 9.8e-06 54.3 56 41.1
Oeu019086.2 Olea europaea HOM05D000463 ORTHO05D002084 9.8e-06 54.3 56 41.1
Os12g0636000 Oryza sativa ssp. japonica HOM05D000463 ORTHO05D002084 9.8e-06 54.3 56 42.9
Peaxi162Scf00069g01319 Petunia axillaris HOM05D000463 ORTHO05D001294 9.8e-06 54.3 61 34.4
PRCOL_00000382 Prasinoderma coloniale HOM05D000463 ORTHO05D002084 9.8e-06 54.3 56 37.5
Hund21228 Selenicereus undatus HOM05D000463 ORTHO05D001294 9.8e-06 54.3 61 37.7
TWI18G1207 Tripterygium wilfordii HOM05D000463 ORTHO05D001294 9.8e-06 54.3 63 31.7
TWI38G1286 Tripterygium wilfordii HOM05D000463 ORTHO05D001294 9.8e-06 54.3 62 35.5


User provided reference genes

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