Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_07676 Sequoiadendron giganteum HOM05D003584 ORTHO05D004148 8.9e-111 403.7 211 100.0
SEGI_20040 Sequoiadendron giganteum HOM05D003584 ORTHO05D004148 2.6e-62 242.7 140 90.0
TAR375G1157 Trochodendron aralioides HOM05D003584 ORTHO05D004148 8.2e-40 167.9 138 65.2
Ah.12g055580 Amaranthus hybridus HOM05D003584 ORTHO05D004148 2.4e-39 166.4 148 58.8
Aqoxy2G01071 Aquilegia oxysepala HOM05D003584 ORTHO05D004148 9.0e-39 164.5 138 65.9
Ciclev10000923m.g Citrus clementina HOM05D003584 ORTHO05D004148 5.9e-38 161.8 138 61.6
Gohir.A12G205400 Gossypium hirsutum HOM05D003584 ORTHO05D004148 5.9e-38 161.8 136 60.3
TAR636G2924 Trochodendron aralioides HOM05D003584 ORTHO05D004148 5.9e-38 161.8 138 62.3
Gorai.008G223300 Gossypium raimondii HOM05D003584 ORTHO05D004148 7.7e-38 161.4 136 60.3
Rhsim11G0029400 Rhododendron simsii HOM05D003584 ORTHO05D004148 7.7e-38 161.4 137 61.3
Hund11168 Selenicereus undatus HOM05D003584 ORTHO05D004148 7.7e-38 161.4 166 53.0
Haze_08130 Corylus avellana HOM05D003584 ORTHO05D004148 1.0e-37 161.0 159 56.0
Actinidia18138 Actinidia chinensis HOM05D003584 ORTHO05D004148 1.3e-37 160.6 136 61.8
Ca_16694_v3 Cicer arietinum L. HOM05D003584 ORTHO05D004148 1.3e-37 160.6 138 60.9
Dinv06917 Davidia involucrata HOM05D003584 ORTHO05D004148 1.3e-37 160.6 138 63.0
QL12p001817 Quercus lobata HOM05D003584 ORTHO05D004148 2.2e-37 159.8 158 53.8
Psat5g079040 Pisum sativum HOM05D003584 ORTHO05D004148 3.8e-37 159.1 138 60.1
EL10Ac5g11993 Beta vulgaris HOM05D003584 ORTHO05D004148 5.0e-37 158.7 148 57.4
MD17G1240600 Malus domestica HOM05D003584 ORTHO05D004148 5.0e-37 158.7 138 62.3
AUR62018622 Chenopodium quinoa HOM05D003584 ORTHO05D004148 6.5e-37 158.3 158 53.8
FAN08G3577 Fragaria x ananassa HOM05D003584 ORTHO05D004148 6.5e-37 158.3 137 62.0
TWI60G0249 Tripterygium wilfordii HOM05D003584 ORTHO05D004148 6.5e-37 158.3 136 61.0
AUR62007367 Chenopodium quinoa HOM05D003584 ORTHO05D004148 8.5e-37 157.9 166 52.4
Gohir.D12G207800 Gossypium hirsutum HOM05D003584 ORTHO05D004148 1.1e-36 157.5 136 59.6
Sc07g0008560 Simmondsia chinensis HOM05D003584 ORTHO05D004148 1.1e-36 157.5 157 53.5
MSTRG.1794 Avicennia marina HOM05D003584 ORTHO05D004148 1.4e-36 157.1 136 63.2
Migut.E01323 Erythranthe guttata HOM05D003584 ORTHO05D004148 1.4e-36 157.1 136 61.0
TWI81G0829 Tripterygium wilfordii HOM05D003584 ORTHO05D004148 1.4e-36 157.1 156 54.5
CAN.G773.27 Capsicum annuum HOM05D003584 ORTHO05D004148 1.9e-36 156.8 136 61.0
FAN13G0019 Fragaria x ananassa HOM05D003584 ORTHO05D004148 1.9e-36 156.8 137 61.3
MD09G1247700 Malus domestica HOM05D003584 ORTHO05D004148 1.9e-36 156.8 138 62.3
FvH4_5g23300 Fragaria vesca HOM05D003584 ORTHO05D004148 2.5e-36 156.4 137 61.3
FAN18G4458 Fragaria x ananassa HOM05D003584 ORTHO05D004148 2.5e-36 156.4 137 61.3
Medtr3g091190 Medicago truncatula HOM05D003584 ORTHO05D004148 2.5e-36 156.4 138 59.4
Nitab4.5_0028488g0010 Nicotiana tabacum HOM05D003584 ORTHO05D004148 2.5e-36 156.4 156 54.5
Sopen06g021710 Solanum pennellii HOM05D003584 ORTHO05D004148 2.5e-36 156.4 156 54.5
Actinidia14775 Actinidia chinensis HOM05D003584 ORTHO05D004148 3.2e-36 156.0 136 61.0
Migut.A00606 Erythranthe guttata HOM05D003584 ORTHO05D004148 3.2e-36 156.0 165 52.1
Prupe.5G026300 Prunus persica HOM05D003584 ORTHO05D004148 3.2e-36 156.0 138 60.9
Solyc06g066310.3 Solanum lycopersicum HOM05D003584 ORTHO05D004148 3.2e-36 156.0 156 54.5
COL.COLO4_16918 Corchorus olitorius HOM05D003584 ORTHO05D004148 4.2e-36 155.6 136 58.8
FAN18G0612 Fragaria x ananassa HOM05D003584 ORTHO05D004148 4.2e-36 155.6 137 61.3
RcHm_v2.0_Chr7g0212251 Rosa chinensis HOM05D003584 ORTHO05D004148 4.2e-36 155.6 137 61.3
CSS0011945 Camellia sinensis var. sinensis HOM05D003584 ORTHO05D004148 7.2e-36 154.8 136 60.3
Cpa.g.sc16.4 Carica papaya HOM05D003584 ORTHO05D004148 7.2e-36 154.8 145 56.6
Cc08_g03790 Coffea canephora HOM05D003584 ORTHO05D004148 7.2e-36 154.8 136 61.8
Dinv29018 Davidia involucrata HOM05D003584 ORTHO05D004148 9.4e-36 154.5 141 58.2
FAN04G2190 Fragaria x ananassa HOM05D003584 ORTHO05D004148 9.4e-36 154.5 137 61.3
Lj1g0024878 Lotus japonicus HOM05D003584 ORTHO05D004148 9.4e-36 154.5 140 59.3
VMungo1309G1861 Vigna mungo HOM05D003584 ORTHO05D004148 9.4e-36 154.5 140 58.6
ATR0796G169 Amborella trichopoda HOM05D003584 ORTHO05D004148 1.2e-35 154.1 158 57.0
CSS0034538 Camellia sinensis var. sinensis HOM05D003584 ORTHO05D004148 1.2e-35 154.1 136 60.3
CiPaw.11G099800 Carya illinoinensis HOM05D003584 ORTHO05D004148 1.2e-35 154.1 157 56.7
Duzib205G2005 Durio zibethinus HOM05D003584 ORTHO05D004148 1.2e-35 154.1 136 59.6
Potri.003G098100 Populus trichocarpa HOM05D003584 ORTHO05D004148 1.2e-35 154.1 136 61.8
Sed0004953 Sechium edule HOM05D003584 ORTHO05D004148 1.6e-35 153.7 158 55.7
Sopen08g024780 Solanum pennellii HOM05D003584 ORTHO05D004148 1.6e-35 153.7 138 60.9
Duzib084G0829 Durio zibethinus HOM05D003584 ORTHO05D004148 2.1e-35 153.3 141 58.2
Oeu031077.4 Olea europaea HOM05D003584 ORTHO05D004148 2.1e-35 153.3 136 61.0
Thecc.03G311600 Theobroma cacao HOM05D003584 ORTHO05D004148 2.1e-35 153.3 140 58.6
Atru.chr6.1539 Acer truncatum HOM05D003584 ORTHO05D004148 2.7e-35 152.9 137 56.9
Aa31LG2G14140 Aethionema arabicum HOM05D003584 ORTHO05D004148 2.7e-35 152.9 139 59.7
CSS0018892 Camellia sinensis var. sinensis HOM05D003584 ORTHO05D004148 2.7e-35 152.9 136 60.3
Glyma.04G237000 Glycine max HOM05D003584 ORTHO05D004148 2.7e-35 152.9 139 57.6
HanXRQChr03g0082001 Helianthus annuus HOM05D003584 ORTHO05D004148 2.7e-35 152.9 136 60.3
Peaxi162Scf00052g00324 Petunia axillaris HOM05D003584 ORTHO05D004148 2.7e-35 152.9 136 60.3
Phvul.009G055300 Phaseolus vulgaris HOM05D003584 ORTHO05D004148 2.7e-35 152.9 141 57.4
Sabra03G0066500 Salix brachista HOM05D003584 ORTHO05D004148 2.7e-35 152.9 136 61.8
CAN.G474.24 Capsicum annuum HOM05D003584 ORTHO05D004148 3.6e-35 152.5 156 53.8
ClCG09G011560 Citrullus lanatus HOM05D003584 ORTHO05D004148 3.6e-35 152.5 148 58.8
vmacro14207 Vaccinium macrocarpon HOM05D003584 ORTHO05D004148 3.6e-35 152.5 136 61.8
vmacro22392 Vaccinium macrocarpon HOM05D003584 ORTHO05D004148 3.6e-35 152.5 136 61.8
Lsat_1_v5_gn_6_73200 Lactuca sativa HOM05D003584 ORTHO05D004148 4.6e-35 152.1 156 55.1
PGSC0003DMG400009321 Solanum tuberosum HOM05D003584 ORTHO05D004148 4.6e-35 152.1 136 59.6
DCAR_004587 Daucus carota HOM05D003584 ORTHO05D004148 6.1e-35 151.8 156 55.8
THA.LOC104798509 Tarenaya hassleriana HOM05D003584 ORTHO05D004148 6.1e-35 151.8 140 57.9
Zm00001eb010900 Zea mays HOM05D003584 ORTHO05D004148 6.1e-35 151.8 135 62.2
arahy.Tifrunner.gnm1.ann1.TJMB8X Arachis hypogaea HOM05D003584 ORTHO05D004148 7.9e-35 151.4 140 55.7
MELO3C003445.2 Cucumis melo HOM05D003584 ORTHO05D004148 7.9e-35 151.4 148 56.8
Solyc08g076140.3 Solanum lycopersicum HOM05D003584 ORTHO05D004148 7.9e-35 151.4 138 60.1
Lj1g0021072 Lotus japonicus HOM05D003584 ORTHO05D004148 1.0e-34 151.0 139 58.3
Nitab4.5_0002429g0030 Nicotiana tabacum HOM05D003584 ORTHO05D008233 1.0e-34 151.0 136 59.6
PSO170G5482 Papaver somniferum HOM05D003584 ORTHO05D004148 1.0e-34 151.0 138 60.9
GSVIVG01013024001 Vitis vinifera HOM05D003584 ORTHO05D004148 1.0e-34 151.0 148 55.4
Peaxi162Scf00185g01121 Petunia axillaris HOM05D003584 ORTHO05D004148 1.4e-34 150.6 156 54.5
CsaV3_3G048780 Cucumis sativus L. HOM05D003584 ORTHO05D004148 1.8e-34 150.2 148 56.8
DCAR_004572 Daucus carota HOM05D003584 ORTHO05D004148 1.8e-34 150.2 156 54.5
Potri.001G135500 Populus trichocarpa HOM05D003584 ORTHO05D004148 1.8e-34 150.2 156 55.8
Eucgr.E01312 Eucalyptus grandis HOM05D003584 ORTHO05D004148 2.3e-34 149.8 139 60.4
Oeu023587.1 Olea europaea HOM05D003584 ORTHO05D004148 2.3e-34 149.8 136 58.8
Thhalv10007477m.g Eutrema salsugineum HOM05D003584 ORTHO05D004148 3.0e-34 149.4 138 58.7
Manes.08G071412 Manihot esculenta HOM05D003584 ORTHO05D004148 3.0e-34 149.4 136 59.6
Pp3c6_2460 Physcomitrium patens HOM05D003584 ORTHO05D004148 3.0e-34 149.4 144 59.0
Nn1g01892 Nelumbo nucifera HOM05D003584 ORTHO05D004148 3.9e-34 149.1 136 61.0
Os03g0253100 Oryza sativa ssp. japonica HOM05D003584 ORTHO05D004148 3.9e-34 149.1 140 60.0
PSO017G0107 Papaver somniferum HOM05D003584 ORTHO05D004148 3.9e-34 149.1 166 56.0
PGR042G1012 Punica granatum HOM05D003584 ORTHO05D004148 3.9e-34 149.1 137 57.7
arahy.Tifrunner.gnm1.ann1.A68QNY Arachis hypogaea HOM05D003584 ORTHO05D004148 5.1e-34 148.7 140 55.0
Glyma.06G127200 Glycine max HOM05D003584 ORTHO05D004148 6.7e-34 148.3 139 56.8
ClCG10G001230 Citrullus lanatus HOM05D003584 ORTHO05D004148 8.8e-34 147.9 136 61.8
Nitab4.5_0002897g0020 Nicotiana tabacum HOM05D003584 ORTHO05D004148 8.8e-34 147.9 136 60.3
TPR.G17292 Trifolium pratense HOM05D003584 ORTHO05D004148 1.1e-33 147.5 138 58.7
AagrBONN_evm.TU.Sc2ySwM_368.333 Anthoceros agrestis HOM05D003584 ORTHO05D004148 2.0e-33 146.7 159 51.6
Hma1.2p1_1645F.1_g295410 Hydrangea macrophylla HOM05D003584 ORTHO05D004148 2.5e-33 146.4 135 59.3
Lalb_Chr11g0066741 Lupinus albus HOM05D003584 ORTHO05D004148 2.5e-33 146.4 138 56.5
Sp1g27630 Schrenkiella parvula HOM05D003584 ORTHO05D004148 2.5e-33 146.4 138 57.2
Carub.0001s3023 Capsella rubella HOM05D003584 ORTHO05D004148 3.3e-33 146.0 140 58.6
BcaB04g18004 Brassica carinata HOM05D003584 ORTHO05D004148 4.3e-33 145.6 138 58.7
AT1G31910 Arabidopsis thaliana HOM05D003584 ORTHO05D004148 5.7e-33 145.2 138 57.2
AL1G46000 Arabidopsis lyrata HOM05D003584 ORTHO05D004148 7.4e-33 144.8 138 57.2
ECA246G3990 Erigeron canadensis HOM05D003584 ORTHO05D004148 9.7e-33 144.4 136 58.8
HanXRQChr06g0175511 Helianthus annuus HOM05D003584 ORTHO05D004148 9.7e-33 144.4 138 58.0
HPP92_020889 Vanilla planifolia HOM05D003584 ORTHO05D004148 9.7e-33 144.4 139 56.8
HPP92_020877 Vanilla planifolia HOM05D003584 ORTHO05D004148 1.3e-32 144.1 139 56.1
ECA240G0026 Erigeron canadensis HOM05D003584 ORTHO05D004148 1.7e-32 143.7 136 56.6
A08p09410 Brassica napus HOM05D003584 ORTHO05D004148 2.2e-32 143.3 138 55.8
BraA08t32940Z Brassica rapa HOM05D003584 ORTHO05D004148 2.2e-32 143.3 138 55.8
BolC8t48013H Brassica oleracea HOM05D003584 ORTHO05D004148 4.8e-32 142.1 138 55.8
CANSAT21G2152 Cannabis sativa HOM05D003584 ORTHO05D004148 4.8e-32 142.1 138 55.1
BcaC07g37640 Brassica carinata HOM05D003584 ORTHO05D004148 6.3e-32 141.7 138 55.8
arahy.Tifrunner.gnm1.ann1.0FP5K8 Arachis hypogaea HOM05D003584 ORTHO05D004148 2.4e-31 139.8 152 52.6
CARHR031250 Cardamine hirsuta HOM05D003584 ORTHO05D004148 2.4e-31 139.8 136 56.6
Mapoly0108s0066 Marchantia polymorpha HOM05D003584 ORTHO05D004148 2.4e-31 139.8 150 53.3
Lsat_1_v5_gn_0_9341 Lactuca sativa HOM05D003584 ORTHO05D004148 5.3e-31 138.7 136 58.8
unitig_748.g7408 Utricularia gibba HOM05D003584 ORTHO05D004148 5.3e-31 138.7 145 54.5
Actinidia29283 Actinidia chinensis HOM05D003584 ORTHO05D004148 1.2e-30 137.5 135 55.6
Rhsim07G0134000 Rhododendron simsii HOM05D003584 ORTHO05D004148 2.6e-30 136.3 124 58.1
Zm00001eb398490 Zea mays HOM05D003584 ORTHO05D004148 3.8e-29 132.5 96 70.8
SGA_v2.0_scaffold111G31387 Striga asiatica HOM05D003584 ORTHO05D004148 8.5e-29 131.3 126 58.7
CDE03G0071 Ceratophyllum demersum HOM05D003584 ORTHO05D004148 1.4e-28 130.6 136 55.9
SMO351G0538 Selaginella moellendorffii HOM05D003584 ORTHO05D004148 5.5e-28 128.6 139 56.1
BcaB03g13780 Brassica carinata HOM05D000379 ORTHO05D004148 2.7e-27 126.3 114 60.5
Atru.chr7.1538 Acer truncatum HOM05D003584 ORTHO05D004148 8.8e-26 121.3 138 50.7
Lj8C319G15 Lonicera japonica HOM05D003584 ORTHO05D004148 8.2e-24 114.8 116 53.4
Actinidia24579 Actinidia chinensis HOM05D003584 ORTHO05D004148 2.7e-19 99.8 127 46.5
CBR_g54895 Chara braunii HOM05D000019 ORTHO05D000353 1.8e-18 97.1 174 40.2
MBI16_g31266_MAGBIO Magnolia biondii HOM05D003584 ORTHO05D004148 2.0e-14 83.6 98 51.0
Actinidia27146 Actinidia chinensis HOM05D003584 ORTHO05D004148 1.0e-13 81.3 95 52.6
SEGI_06426 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.4e-07 60.1 57 61.4


User provided reference genes

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