Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 3.7e-93 344.7 162 100.0
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 7.2e-36 154.5 85 85.9
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 4.2e-12 75.5 54 72.2
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 4.2e-12 75.5 54 72.2
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 4.2e-12 75.5 54 72.2
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 4.2e-12 75.5 54 72.2
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 5.5e-12 75.1 54 72.2
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 5.5e-12 75.1 88 47.7
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 5.5e-12 75.1 54 72.2
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 5.5e-12 75.1 54 72.2
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 5.5e-12 75.1 54 72.2
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 5.5e-12 75.1 54 72.2
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 5.5e-12 75.1 54 72.2
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 7.2e-12 74.7 88 47.7
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 1.2e-11 73.9 54 70.4
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 1.2e-11 73.9 54 70.4
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-11 73.9 54 70.4
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-11 73.9 54 70.4
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-11 73.9 54 70.4
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 1.2e-11 73.9 54 70.4
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 2.1e-11 73.2 88 47.7
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.1e-11 73.2 54 70.4
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.1e-11 73.2 54 70.4
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 2.1e-11 73.2 88 47.7
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 2.1e-11 73.2 88 47.7
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 2.1e-11 73.2 88 47.7
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 2.1e-11 73.2 88 47.7
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 2.1e-11 73.2 88 47.7
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.1e-11 73.2 54 70.4
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.1e-11 73.2 54 70.4
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.1e-11 73.2 54 72.2
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 2.1e-11 73.2 54 70.4
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 2.1e-11 73.2 54 70.4
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 2.1e-11 73.2 88 47.7
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 2.1e-11 73.2 54 70.4
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 2.1e-11 73.2 54 70.4
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 2.1e-11 73.2 54 70.4
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 2.1e-11 73.2 54 70.4
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 2.1e-11 73.2 54 70.4
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 2.1e-11 73.2 54 70.4
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 2.7e-11 72.8 88 47.7
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 2.7e-11 72.8 54 72.2
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 2.7e-11 72.8 54 70.4
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 2.7e-11 72.8 54 70.4
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 3.6e-11 72.4 54 70.4
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 3.6e-11 72.4 54 68.5
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 4.7e-11 72.0 81 54.3
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 6.1e-11 71.6 54 70.4
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 6.1e-11 71.6 54 70.4
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 8.0e-11 71.2 54 68.5
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.0e-10 70.9 54 68.5
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.0e-10 70.9 54 68.5
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.0e-10 70.9 54 68.5
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 1.0e-10 70.9 88 45.5
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.8e-10 70.1 54 68.5
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.8e-10 70.1 56 66.1
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.8e-10 70.1 54 68.5
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.3e-10 69.7 56 66.1
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.3e-10 69.7 54 66.7
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 3.0e-10 69.3 54 66.7
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 4.0e-10 68.9 75 54.7
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 5.2e-10 68.6 54 66.7
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 5.2e-10 68.6 54 68.5
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.2e-10 68.6 54 68.5
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.2e-10 68.6 54 68.5
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.2e-10 68.6 54 68.5
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 8.8e-10 67.8 55 61.8
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 1.5e-09 67.0 54 66.7
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.0e-09 66.6 54 66.7
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 2.0e-09 66.6 54 64.8
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 2.0e-09 66.6 54 66.7
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.6e-09 66.2 54 66.7
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 2.6e-09 66.2 38 76.3
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 4.4e-09 65.5 54 64.8
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 4.4e-09 65.5 54 66.7
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 5.7e-09 65.1 56 60.7
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.7e-08 63.5 46 69.6
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 1.7e-08 63.5 54 61.1
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 1.7e-08 63.5 56 60.7
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 2.2e-08 63.2 38 73.7
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 6.3e-08 61.6 56 57.1
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.8e-07 60.1 53 60.4
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.4e-07 59.7 44 63.6
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 3.1e-07 59.3 33 78.8
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.1e-07 58.9 32 81.2


User provided reference genes

Program Settings