Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06747 Sequoiadendron giganteum HOM05D038500 ORTHO05D387054 0.0e+00 1921.4 1282 100.0
SEGI_24862 Sequoiadendron giganteum HOM05D038500 ORTHO05D384293 0.0e+00 1708.0 1284 88.9
SEGI_41178 Sequoiadendron giganteum HOM05D038500 ORTHO05D383783 0.0e+00 1357.4 1346 75.3
BcaB06g28879 Brassica carinata HOM05D001091 ORTHO05D001020 1.6e-16 93.2 347 27.7
CsaV3_3G001680 Cucumis sativus L. HOM05D000344 ORTHO05D003292 7.5e-11 74.3 351 27.1
Sed0011780 Sechium edule HOM05D004718 ORTHO05D005838 6.3e-10 71.2 304 23.7
Nn8g40158 Nelumbo nucifera HOM05D004718 ORTHO05D005838 1.4e-09 70.1 311 25.4
GSVIVG01035602001 Vitis vinifera HOM05D004718 ORTHO05D005838 1.4e-09 70.1 310 24.8
Zm00001eb090590 Zea mays HOM05D001091 ORTHO05D001020 1.4e-09 70.1 204 29.9
Lalb_Chr05g0216041 Lupinus albus HOM05D000344 ORTHO05D003292 1.8e-09 69.7 330 25.2
Sed0017947 Sechium edule HOM05D000344 ORTHO05D003292 1.8e-09 69.7 328 26.5
Hund19371 Selenicereus undatus HOM05D004718 ORTHO05D005838 1.8e-09 69.7 327 25.4
Thecc.09G001900 Theobroma cacao HOM05D004718 ORTHO05D005838 2.4e-09 69.3 305 25.9
CAN.G1644.6 Capsicum annuum HOM05D000344 ORTHO05D003292 4.1e-09 68.6 319 23.2
Sc06g0001390 Simmondsia chinensis HOM05D004718 ORTHO05D005838 5.4e-09 68.2 352 25.3
A04p27290 Brassica napus HOM05D001091 ORTHO05D001020 7.0e-09 67.8 314 25.2
MELO3C013849.2 Cucumis melo HOM05D000344 ORTHO05D003292 9.1e-09 67.4 347 25.1
Sc17g0004620 Simmondsia chinensis HOM05D001091 ORTHO05D001020 9.1e-09 67.4 132 33.3
Peaxi162Scf00583g00537 Petunia axillaris HOM05D004718 ORTHO05D005838 1.2e-08 67.0 307 26.1
Actinidia09191 Actinidia chinensis HOM05D000344 ORTHO05D003292 1.6e-08 66.6 333 27.0
HanXRQChr17g0536271 Helianthus annuus HOM05D000344 ORTHO05D003292 1.6e-08 66.6 335 25.7
BraA04t18227Z Brassica rapa HOM05D001091 ORTHO05D001020 2.0e-08 66.2 315 25.7
BraA04t18228Z Brassica rapa HOM05D001091 ORTHO05D001020 2.0e-08 66.2 315 25.7
ATR0609G013 Amborella trichopoda HOM05D001091 ORTHO05D001020 2.7e-08 65.9 155 31.6
CiPaw.07G215000 Carya illinoinensis HOM05D004718 ORTHO05D005838 2.7e-08 65.9 374 22.5
RcHm_v2.0_Chr6g0312261 Rosa chinensis HOM05D004718 ORTHO05D005838 2.7e-08 65.9 307 23.5
Actinidia14804 Actinidia chinensis HOM05D000344 ORTHO05D003292 3.5e-08 65.5 335 25.7
MELO3C011203.2 Cucumis melo HOM05D004718 ORTHO05D005838 3.5e-08 65.5 304 23.7
ClCG10G001570 Citrullus lanatus HOM05D000344 ORTHO05D003292 4.5e-08 65.1 339 26.0
DCAR_008266 Daucus carota HOM05D000344 ORTHO05D003292 4.5e-08 65.1 349 24.9
THA.LOC104827757 Tarenaya hassleriana HOM05D000344 ORTHO05D003292 4.5e-08 65.1 389 25.2
Ah.14g086120 Amaranthus hybridus HOM05D001091 ORTHO05D001020 5.9e-08 64.7 164 28.7
MSTRG.12454 Avicennia marina HOM05D003775 ORTHO05D004314 5.9e-08 64.7 382 23.3
CAN.G2526.1 Capsicum annuum HOM05D000344 ORTHO05D003292 5.9e-08 64.7 233 27.5
CAN.G500.45 Capsicum annuum HOM05D000344 ORTHO05D008629 5.9e-08 64.7 314 23.9
COL.COLO4_18636 Corchorus olitorius HOM05D004718 ORTHO05D005838 5.9e-08 64.7 369 24.1
Lj1g0000533 Lotus japonicus HOM05D001091 ORTHO05D001020 5.9e-08 64.7 134 34.3
Potri.006G033800 Populus trichocarpa HOM05D001091 ORTHO05D001020 5.9e-08 64.7 157 30.6
Sabra06G0022400 Salix brachista HOM05D001091 ORTHO05D001020 5.9e-08 64.7 155 31.0
Aa31LG3G1110 Aethionema arabicum HOM05D001091 ORTHO05D001020 7.7e-08 64.3 142 32.4
Carub.0008s0118 Capsella rubella HOM05D000344 ORTHO05D003292 7.7e-08 64.3 328 22.9
Dinv22154 Davidia involucrata HOM05D003775 ORTHO05D004314 7.7e-08 64.3 336 26.2
Manes.18G079200 Manihot esculenta HOM05D004718 ORTHO05D005838 7.7e-08 64.3 349 23.2
PGR042G2897 Punica granatum HOM05D001091 ORTHO05D001020 7.7e-08 64.3 134 32.1
Hund14395 Selenicereus undatus HOM05D000344 ORTHO05D003292 7.7e-08 64.3 329 24.9
Dinv09445 Davidia involucrata HOM05D004718 ORTHO05D005838 1.0e-07 63.9 362 25.4
Duzib168G2024 Durio zibethinus HOM05D004718 ORTHO05D005838 1.0e-07 63.9 304 25.3
CAN.G30.25 Capsicum annuum HOM05D004718 ORTHO05D005838 1.3e-07 63.5 305 25.2
Potri.005G179500 Populus trichocarpa HOM05D004718 ORTHO05D005838 1.3e-07 63.5 311 24.4
ClCG08G012790 Citrullus lanatus HOM05D004718 ORTHO05D005838 1.7e-07 63.2 301 23.9
ECA232G4671 Erigeron canadensis HOM05D000344 ORTHO05D000934 1.7e-07 63.2 369 26.0
Actinidia11652 Actinidia chinensis HOM05D001091 ORTHO05D001020 2.3e-07 62.8 151 30.5
Carub.0004s2323 Capsella rubella HOM05D001091 ORTHO05D001020 2.3e-07 62.8 142 31.7
Thecc.03G227100 Theobroma cacao HOM05D000344 ORTHO05D003292 2.3e-07 62.8 384 23.4
BcaC02g12861 Brassica carinata HOM05D001091 ORTHO05D001020 2.9e-07 62.4 133 32.3
A04p31280 Brassica napus HOM05D001091 ORTHO05D001020 2.9e-07 62.4 139 31.7
C04p68670 Brassica napus HOM05D001091 ORTHO05D001020 2.9e-07 62.4 133 32.3
BolC4t28373H Brassica oleracea HOM05D001091 ORTHO05D001020 2.9e-07 62.4 133 32.3
BraA04t18585Z Brassica rapa HOM05D001091 ORTHO05D001020 2.9e-07 62.4 133 32.3
MD06G1034700 Malus domestica HOM05D000344 ORTHO05D003292 2.9e-07 62.4 330 23.0
Mapoly0004s0252 Marchantia polymorpha HOM05D001091 ORTHO05D001020 2.9e-07 62.4 161 31.1
Prupe.5G035200 Prunus persica HOM05D000344 ORTHO05D003292 2.9e-07 62.4 360 23.1
Hund17702 Selenicereus undatus HOM05D001091 ORTHO05D001020 2.9e-07 62.4 169 28.4
PGSC0003DMG401018450 Solanum tuberosum HOM05D004718 ORTHO05D005838 2.9e-07 62.4 308 25.0
Carub.0005s1593 Capsella rubella HOM05D004718 ORTHO05D005838 3.8e-07 62.0 307 24.1
Sp4g23240 Schrenkiella parvula HOM05D001091 ORTHO05D001020 3.8e-07 62.0 133 32.3
Sc07g0008680 Simmondsia chinensis HOM05D000344 ORTHO05D003292 3.8e-07 62.0 440 22.5
Solyc03g078390.3 Solanum lycopersicum HOM05D004718 ORTHO05D005838 3.8e-07 62.0 305 24.9
Sopen03g021200 Solanum pennellii HOM05D004718 ORTHO05D005838 3.8e-07 62.0 305 24.9
Thecc.10G130300 Theobroma cacao HOM05D001091 ORTHO05D001020 3.8e-07 62.0 156 30.8
AT2G40930 Arabidopsis thaliana HOM05D001091 ORTHO05D001020 5.0e-07 61.6 140 31.4
Cc08_g02820 Coffea canephora HOM05D000344 ORTHO05D003292 5.0e-07 61.6 344 24.1
DCAR_005635 Daucus carota HOM05D000344 ORTHO05D003292 5.0e-07 61.6 89 40.4
SEGI_29448 Sequoiadendron giganteum HOM05D001091 ORTHO05D001020 5.0e-07 61.6 157 31.8
Zm00001eb310400 Zea mays HOM05D004718 ORTHO05D005838 5.0e-07 61.6 326 23.6
Aqoxy1G03632 Aquilegia oxysepala HOM05D001091 ORTHO05D001020 6.6e-07 61.2 183 29.0
AL4G38890 Arabidopsis lyrata HOM05D001091 ORTHO05D001020 6.6e-07 61.2 142 31.0
EL10Ac1g01773 Beta vulgaris HOM05D001091 ORTHO05D001020 6.6e-07 61.2 142 33.1
BcaB02g09597 Brassica carinata HOM05D004718 ORTHO05D005838 8.6e-07 60.8 310 24.2
CANSAT64G0657 Cannabis sativa HOM05D001091 ORTHO05D001020 8.6e-07 60.8 160 30.6
Gohir.D13G185401 Gossypium hirsutum HOM05D004718 ORTHO05D005838 8.6e-07 60.8 354 24.0
Gorai.013G211400 Gossypium raimondii HOM05D004718 ORTHO05D005838 8.6e-07 60.8 354 24.0
Cpa.g.sc552.1 Carica papaya HOM05D000344 ORTHO05D003292 1.1e-06 60.5 329 25.2
Lj7A755G38 Lonicera japonica HOM05D004718 ORTHO05D005838 1.1e-06 60.5 304 25.0
unitig_0.g1155 Utricularia gibba HOM05D001091 ORTHO05D001020 1.1e-06 60.5 134 31.3
Aqoxy7G02725 Aquilegia oxysepala HOM05D001091 ORTHO05D001020 1.5e-06 60.1 116 36.2
Cpa.g.sc227.5 Carica papaya HOM05D000344 ORTHO05D003292 1.5e-06 60.1 343 23.3
Gohir.A03G000400 Gossypium hirsutum HOM05D000344 ORTHO05D003292 1.5e-06 60.1 330 24.2
CAN.G475.43 Capsicum annuum HOM05D000344 ORTHO05D000934 1.9e-06 59.7 326 24.8
AUR62028027 Chenopodium quinoa HOM05D004718 ORTHO05D005838 1.9e-06 59.7 367 23.4
FAN13G0520 Fragaria x ananassa HOM05D000344 ORTHO05D003292 1.9e-06 59.7 321 25.2
Glyma.14G109000 Glycine max HOM05D000344 ORTHO05D003478 1.9e-06 59.7 354 23.2
Sabra16G0035100 Salix brachista HOM05D001091 ORTHO05D001020 1.9e-06 59.7 155 29.7
SMO367G0705 Selaginella moellendorffii HOM05D004718 ORTHO05D005838 1.9e-06 59.7 400 22.0
BcaB01g00691 Brassica carinata HOM05D004718 ORTHO05D005838 2.5e-06 59.3 346 24.0
A06p18130 Brassica napus HOM05D004718 ORTHO05D005838 2.5e-06 59.3 364 24.5
BraA06t24901Z Brassica rapa HOM05D004718 ORTHO05D005838 2.5e-06 59.3 364 24.5
Nitab4.5_0000804g0190 Nicotiana tabacum HOM05D000344 ORTHO05D003292 2.5e-06 59.3 345 23.5
EL10Ac5g12115 Beta vulgaris HOM05D000344 ORTHO05D003292 3.3e-06 58.9 89 39.3
AUR62020697 Chenopodium quinoa HOM05D004718 ORTHO05D005838 3.3e-06 58.9 361 24.1
DCAR_018602 Daucus carota HOM05D001091 ORTHO05D001020 3.3e-06 58.9 158 29.1
FAN04G0675 Fragaria x ananassa HOM05D000344 ORTHO05D003292 3.3e-06 58.9 336 23.5
Lsat_1_v5_gn_9_15821 Lactuca sativa HOM05D001091 ORTHO05D001020 3.3e-06 58.9 136 30.9
Zm00001eb300350 Zea mays HOM05D001091 ORTHO05D001020 3.3e-06 58.9 173 26.0
Migut.H01115 Erythranthe guttata HOM05D004718 ORTHO05D005838 4.2e-06 58.5 312 24.7
FAN18G2803 Fragaria x ananassa HOM05D000344 ORTHO05D003292 4.2e-06 58.5 89 38.2
Psat6g031760 Pisum sativum HOM05D004718 ORTHO05D005838 4.2e-06 58.5 327 26.3
DCAR_012711 Daucus carota HOM05D001091 ORTHO05D001020 5.5e-06 58.2 126 34.1
Glyma.14G132500 Glycine max HOM05D004718 ORTHO05D005838 5.5e-06 58.2 308 23.4
Lalb_Chr16g0381331 Lupinus albus HOM05D000344 ORTHO05D003292 5.5e-06 58.2 343 24.5
Phvul.009G100000 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 5.5e-06 58.2 319 22.6
MSTRG.2684 Avicennia marina HOM05D004718 ORTHO05D005838 7.2e-06 57.8 387 23.8
CANSAT25G2838 Cannabis sativa HOM05D004718 ORTHO05D005838 7.2e-06 57.8 365 24.1
Duzib068G0882 Durio zibethinus HOM05D000344 ORTHO05D003292 7.2e-06 57.8 86 38.4
Oeu006254.1 Olea europaea HOM05D000344 ORTHO05D003292 7.2e-06 57.8 347 26.5
Ah.11g044230 Amaranthus hybridus HOM05D004718 ORTHO05D005838 9.5e-06 57.4 358 23.7
Ciclev10007306m.g Citrus clementina HOM05D004718 ORTHO05D005838 9.5e-06 57.4 434 23.3
ECA240G2491 Erigeron canadensis HOM05D004718 ORTHO05D005838 9.5e-06 57.4 353 24.1
Glyma.01G018300 Glycine max HOM05D000344 ORTHO05D003292 9.5e-06 57.4 333 24.3


User provided reference genes

Program Settings