Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_06649 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 2.2e-302 1041.6 550 100.0
TAR369G0522 Trochodendron aralioides HOM05D002034 ORTHO05D004251 2.6e-170 602.8 485 62.9
ATR0174G009 Amborella trichopoda HOM05D002034 ORTHO05D004251 1.7e-169 600.1 472 62.7
Nn2g10970 Nelumbo nucifera HOM05D002034 ORTHO05D004251 2.1e-164 583.2 471 61.1
Dinv28678 Davidia involucrata HOM05D002034 ORTHO05D004251 1.4e-163 580.5 480 61.7
GSVIVG01024678001 Vitis vinifera HOM05D002034 ORTHO05D004251 2.0e-162 576.6 488 60.5
Hma1.2p1_0841F.1_g226850 Hydrangea macrophylla HOM05D002034 ORTHO05D004251 3.4e-162 575.9 488 60.0
PSO339G3538 Papaver somniferum HOM05D002034 ORTHO05D004251 4.4e-162 575.5 467 61.7
Actinidia23213 Actinidia chinensis HOM05D002034 ORTHO05D004251 5.8e-162 575.1 496 60.3
Aqoxy2G00822 Aquilegia oxysepala HOM05D002034 ORTHO05D004251 1.3e-161 573.9 491 59.9
Rhsim13G0065900 Rhododendron simsii HOM05D002034 ORTHO05D004251 1.3e-161 573.9 482 61.0
PSO801G0069 Papaver somniferum HOM05D002034 ORTHO05D004251 2.2e-161 573.2 467 61.7
Manes.02G215950 Manihot esculenta HOM05D002034 ORTHO05D004251 4.9e-161 572.0 503 58.4
QL01p039781 Quercus lobata HOM05D002034 ORTHO05D004251 8.4e-161 571.2 473 61.3
CSS0000627 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 1.1e-160 570.9 465 61.5
Cpa.g.sc2.386 Carica papaya HOM05D002034 ORTHO05D004251 2.1e-159 566.6 486 59.5
Potri.009G076000 Populus trichocarpa HOM05D002034 ORTHO05D004251 3.5e-159 565.8 490 58.2
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 2.3e-158 563.1 498 57.4
Eucgr.B02225 Eucalyptus grandis HOM05D002034 ORTHO05D004251 3.0e-158 562.8 469 59.7
Prupe.6G051700 Prunus persica HOM05D002034 ORTHO05D004251 3.9e-158 562.4 470 59.8
Lsat_1_v5_gn_9_18521 Lactuca sativa HOM05D002034 ORTHO05D004251 6.6e-158 561.6 476 59.5
CsaV3_1G036460 Cucumis sativus L. HOM05D002034 ORTHO05D004251 8.7e-158 561.2 466 58.2
CSS0027541 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 1.9e-157 560.1 458 61.4
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 4.3e-157 558.9 497 55.9
ECA247G1661 Erigeron canadensis HOM05D002034 ORTHO05D004251 4.3e-157 558.9 471 59.9
Sp6g20200 Schrenkiella parvula HOM05D002034 ORTHO05D004251 4.3e-157 558.9 471 58.4
MD11G1065500 Malus domestica HOM05D002034 ORTHO05D004251 5.6e-157 558.5 466 59.9
Duzib150G0116 Durio zibethinus HOM05D002034 ORTHO05D004251 9.6e-157 557.8 484 57.6
RcHm_v2.0_Chr5g0070931 Rosa chinensis HOM05D002034 ORTHO05D004251 9.6e-157 557.8 466 60.3
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 1.2e-156 557.4 488 58.2
Lj6g0001278 Lotus japonicus HOM05D002034 ORTHO05D004251 1.6e-156 557.0 482 59.8
CANSAT54G3012 Cannabis sativa HOM05D002034 ORTHO05D004251 2.8e-156 556.2 471 58.4
HanXRQChr08g0229181 Helianthus annuus HOM05D002034 ORTHO05D004251 6.2e-156 555.1 466 60.3
CiPaw.13G072000 Carya illinoinensis HOM05D002034 ORTHO05D004251 8.1e-156 554.7 479 57.0
AT5G58510 Arabidopsis thaliana HOM05D002034 ORTHO05D004251 1.8e-155 553.5 471 58.0
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 3.1e-155 552.7 469 59.9
BraA10t43651Z Brassica rapa HOM05D002034 ORTHO05D004251 4.0e-155 552.4 471 58.0
Carub.0008s1910 Capsella rubella HOM05D002034 ORTHO05D004251 5.2e-155 552.0 471 57.5
Sed0002046 Sechium edule HOM05D002034 ORTHO05D004251 6.9e-155 551.6 488 55.9
C09p50470 Brassica napus HOM05D002034 ORTHO05D004251 9.0e-155 551.2 471 57.7
BolC9t57903H Brassica oleracea HOM05D002034 ORTHO05D004251 9.0e-155 551.2 471 57.7
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.2e-154 550.8 492 56.3
Thhalv10012586m.g Eutrema salsugineum HOM05D002034 ORTHO05D004251 1.5e-154 550.4 493 56.0
AL8G34750 Arabidopsis lyrata HOM05D002034 ORTHO05D004251 2.0e-154 550.1 471 58.0
BolC3t13874H Brassica oleracea HOM05D002034 ORTHO05D004251 2.6e-154 549.7 493 55.6
Solyc06g082200.4 Solanum lycopersicum HOM05D002034 ORTHO05D004251 4.4e-154 548.9 469 56.9
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 7.6e-154 548.1 466 58.4
Cc01_g14670 Coffea canephora HOM05D002034 ORTHO05D004251 1.7e-153 547.0 494 56.5
Medtr3g465600 Medicago truncatula HOM05D002034 ORTHO05D004251 1.7e-153 547.0 484 57.9
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 2.2e-153 546.6 483 56.7
Ciclev10027766m.g Citrus clementina HOM05D002034 ORTHO05D004251 2.9e-153 546.2 493 56.4
Gohir.D13G239600 Gossypium hirsutum HOM05D002034 ORTHO05D004251 2.9e-153 546.2 466 57.9
Gorai.013G270500 Gossypium raimondii HOM05D002034 ORTHO05D004251 3.8e-153 545.8 466 57.9
MELO3C020522.2 Cucumis melo HOM05D002034 ORTHO05D004251 6.4e-153 545.0 495 54.7
Duzib168G1938 Durio zibethinus HOM05D002034 ORTHO05D004251 8.4e-153 544.7 477 57.7
Sopen06g033580 Solanum pennellii HOM05D002034 ORTHO05D004251 8.4e-153 544.7 469 56.5
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 1.1e-152 544.3 488 58.4
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 1.1e-152 544.3 493 55.4
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.1e-152 544.3 493 55.4
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 3.2e-152 542.7 465 57.6
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 3.2e-152 542.7 479 56.8
FvH4_3g39400 Fragaria vesca HOM05D002034 ORTHO05D004251 5.4e-152 542.0 466 58.4
arahy.Tifrunner.gnm1.ann1.Z7E5WK Arachis hypogaea HOM05D002034 ORTHO05D004251 7.1e-152 541.6 489 58.7
FAN11G3897 Fragaria x ananassa HOM05D002034 ORTHO05D004251 7.1e-152 541.6 466 58.4
Atru.chr3.4154 Acer truncatum HOM05D002034 ORTHO05D004251 6.0e-151 538.5 499 56.5
FAN16G1479 Fragaria x ananassa HOM05D002034 ORTHO05D004251 1.0e-150 537.7 466 58.4
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 1.0e-150 537.7 471 60.1
TPR.G32915 Trifolium pratense HOM05D002034 ORTHO05D004251 1.3e-150 537.3 473 58.6
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 5.1e-150 535.4 480 59.0
COL.COLO4_11121 Corchorus olitorius HOM05D002034 ORTHO05D004251 6.6e-150 535.0 466 59.0
DCAR_018219 Daucus carota HOM05D002034 ORTHO05D004251 1.1e-149 534.3 488 56.6
PGR102G2830 Punica granatum HOM05D002034 ORTHO05D004251 1.1e-149 534.3 485 56.7
EL10Ac7g15893 Beta vulgaris HOM05D002034 ORTHO05D004251 1.9e-149 533.5 483 56.1
MSTRG.8115 Avicennia marina HOM05D002034 ORTHO05D004251 3.3e-149 532.7 471 57.7
TAR357G0005 Trochodendron aralioides HOM05D002034 ORTHO05D004251 3.3e-149 532.7 450 59.3
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 4.3e-149 532.3 485 57.5
Psat5g155480 Pisum sativum HOM05D002034 ORTHO05D004251 4.3e-149 532.3 471 57.3
CAN.G1095.17 Capsicum annuum HOM05D002034 ORTHO05D004251 7.3e-149 531.6 469 56.9
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 7.3e-149 531.6 479 56.2
arahy.Tifrunner.gnm1.ann1.RZ6BDN Arachis hypogaea HOM05D002034 ORTHO05D004251 6.2e-148 528.5 466 57.1
Peaxi162Scf00808g00111 Petunia axillaris HOM05D002034 ORTHO05D004251 8.1e-148 528.1 489 56.0
Sc12g0000270 Simmondsia chinensis HOM05D002034 ORTHO05D004251 8.1e-148 528.1 482 56.0
arahy.Tifrunner.gnm1.ann1.WA30K5 Arachis hypogaea HOM05D002034 ORTHO05D004251 1.4e-147 527.3 467 57.2
Cfa011748 Carpinus fangiana HOM05D002034 ORTHO05D004251 1.4e-147 527.3 479 55.3
CDE08G0674 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 1.4e-147 527.3 492 56.1
ClCG03G000460 Citrullus lanatus HOM05D002034 ORTHO05D004251 3.1e-147 526.2 487 54.4
Nitab4.5_0004155g0040 Nicotiana tabacum HOM05D002034 ORTHO05D004251 4.5e-146 522.3 469 56.1
Peaxi162Scf00390g00823 Petunia axillaris HOM05D002034 ORTHO05D004251 4.5e-146 522.3 476 56.5
Nitab4.5_0006148g0070 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.9e-144 516.9 469 55.9
Os03g0295700 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D004251 3.5e-143 512.7 504 52.6
Zm00001eb396860 Zea mays HOM05D002034 ORTHO05D004251 2.4e-139 500.0 471 52.9
BcaB08g36187 Brassica carinata HOM05D002034 ORTHO05D004251 9.0e-139 498.0 469 54.6
Haze_24388 Corylus avellana HOM05D002034 ORTHO05D004251 2.0e-138 496.9 479 53.2
Ca_14990_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 3.4e-138 496.1 470 55.7
Ca_30101_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 3.4e-138 496.1 470 55.7
AUR62009695 Chenopodium quinoa HOM05D002034 ORTHO05D004251 2.9e-137 493.0 516 52.1
AagrBONN_evm.TU.Sc2ySwM_228.2653 Anthoceros agrestis HOM05D002034 ORTHO05D004251 7.1e-136 488.4 464 53.7
Mapoly0006s0080 Marchantia polymorpha HOM05D002034 ORTHO05D004251 1.8e-134 483.8 476 50.6
CARHR272340 Cardamine hirsuta HOM05D002034 ORTHO05D004251 9.6e-133 478.0 400 58.8
BcaB01g04520 Brassica carinata HOM05D002034 ORTHO05D004251 6.9e-131 471.9 422 56.4
Sabra09G0057900 Salix brachista HOM05D002034 ORTHO05D004251 1.0e-129 468.0 568 47.9
VMungo0540G1016 Vigna mungo HOM05D002034 ORTHO05D004251 2.1e-127 460.3 402 58.7
unitig_736.g22533 Utricularia gibba HOM05D002034 ORTHO05D004251 2.7e-127 459.9 462 53.9
SMO141G0130 Selaginella moellendorffii HOM05D002034 ORTHO05D004251 3.5e-127 459.5 478 51.3
HPP92_012023 Vanilla planifolia HOM05D002034 ORTHO05D004251 1.3e-126 457.6 430 55.6
Pp3c22_21020 Physcomitrium patens HOM05D002034 ORTHO05D004251 3.7e-124 449.5 487 48.3
AUR62036251 Chenopodium quinoa HOM05D002034 ORTHO05D004251 6.3e-124 448.7 483 50.7
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 6.9e-123 445.3 483 49.1
Migut.F01663 Erythranthe guttata HOM05D002034 ORTHO05D004251 1.3e-121 441.0 477 52.0
vmacro02935 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 6.1e-119 432.2 376 59.8
Nitab4.5_0001115g0080 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.5e-117 427.6 426 54.7
MSTRG.9115 Avicennia marina HOM05D002034 ORTHO05D004251 5.7e-117 425.6 371 59.6
Pp3c20_20280 Physcomitrium patens HOM05D002034 ORTHO05D004251 6.9e-115 418.7 494 46.2
Pp3c20_20284 Physcomitrium patens HOM05D002034 ORTHO05D004251 6.9e-115 418.7 494 46.2
Ah.15g096260 Amaranthus hybridus HOM05D002034 ORTHO05D004251 2.5e-112 410.2 380 56.1
Hund18961 Selenicereus undatus HOM05D002034 ORTHO05D004251 1.2e-103 381.3 534 43.3
AUR62036252 Chenopodium quinoa HOM05D002034 ORTHO05D004251 2.7e-103 380.2 471 46.5
SGA_v2.0_scaffold62G21324 Striga asiatica HOM05D002034 ORTHO05D004251 2.7e-82 310.5 272 57.7
Lalb_Chr15g0083131 Lupinus albus HOM05D002034 ORTHO05D004251 1.3e-81 308.1 270 56.3
Oeu023980.1 Olea europaea HOM05D002034 ORTHO05D004251 1.5e-77 294.7 268 55.6
CBR_g32390 Chara braunii HOM05D002034 ORTHO05D004251 3.9e-73 280.0 538 34.8
Lalb_Chr15g0083121 Lupinus albus HOM05D002034 ORTHO05D004251 1.2e-61 241.9 188 63.8
Lj1A128G36 Lonicera japonica HOM05D002034 ORTHO05D004251 5.6e-56 223.0 292 44.5
HPP92_012001 Vanilla planifolia HOM05D002034 ORTHO05D004251 2.9e-52 210.7 207 53.1
SEGI_39431 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 6.4e-52 209.5 115 87.8
CSS0020954 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 9.5e-48 195.7 149 63.8
Pp3c17_9080 Physcomitrium patens HOM05D002034 ORTHO05D004251 1.2e-45 188.7 425 31.5
PGSC0003DMG400030372 Solanum tuberosum HOM05D002034 ORTHO05D004251 1.2e-45 188.7 141 61.0
C03p14280 Brassica napus HOM05D002034 ORTHO05D004251 7.6e-45 186.0 155 60.0
SHI19193 Sapria himalayana HOM05D002034 ORTHO05D004251 5.1e-41 173.3 833 23.8
Nitab4.5_0001469g0010 Nicotiana tabacum HOM05D002034 ORTHO05D004251 6.0e-34 149.8 131 60.3
vmacro02934 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 1.0e-33 149.1 96 71.9
Lsat_1_v5_gn_6_89500 Lactuca sativa HOM05D002034 ORTHO05D004251 2.3e-33 147.9 212 43.4
Ah.15g096250 Amaranthus hybridus HOM05D002034 ORTHO05D004251 1.1e-30 139.0 104 61.5
VMungo0647G1991 Vigna mungo HOM05D002034 ORTHO05D004251 3.3e-24 117.5 112 50.9
SEGI_15036 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 1.9e-19 101.7 88 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1890 Anthoceros agrestis HOM05D002034 ORTHO05D004251 9.0e-14 82.8 56 64.3
HPP92_012000 Vanilla planifolia HOM05D002034 ORTHO05D004251 2.6e-13 81.3 55 69.1
arahy.Tifrunner.gnm1.ann1.A2LLI3 Arachis hypogaea HOM05D000315 ORTHO05D004251 4.5e-13 80.5 98 49.0
VMungo0647G0969 Vigna mungo HOM05D002034 ORTHO05D004251 2.9e-12 77.8 81 50.6
BcaB01g04519 Brassica carinata HOM05D002034 ORTHO05D004251 1.6e-10 72.0 50 66.0
MCO07G130 Micromonas commoda HOM05D002034 ORTHO05D004251 1.6e-10 72.0 106 38.7
arahy.Tifrunner.gnm1.ann1.I9ZGDX Arachis hypogaea HOM05D000315 ORTHO05D000527 4.6e-10 70.5 98 45.9
SMO358G0516 Selaginella moellendorffii HOM05D001434 ORTHO05D004586 8.2e-07 59.7 98 38.8
Pp3c20_12230 Physcomitrium patens HOM05D001434 ORTHO05D004586 3.1e-06 57.8 102 35.3
SGA_v2.0_scaffold63G21659 Striga asiatica HOM05D002034 ORTHO05D004251 6.9e-06 56.6 33 75.8
AagrBONN_evm.TU.Sc2ySwM_228.3056 Anthoceros agrestis HOM05D001434 ORTHO05D004586 9.0e-06 56.2 92 37.0


User provided reference genes

Program Settings